Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Forward (+)

1385613 .. 1387803

Gene Structure 2191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCGAGGTATTACTGTGATTATTGCGATACTTATCTCACTCACGATTCCCCATCAGTAAGGAAGCAGCACAATGCTGGTTACAAACACAAGGCGAATGTGAGAATATACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTGATTGATCAGAGAATTAAGGAACATCTTGGCCAAACTGGAGGGTATCAACAGGTTGGTGCTGTGTTTAATCAGCATATGCTTGCAAGACCTCGCCCTCCCATGATGCTACCACCTGGAAGTATGCCTATGGGTATGCGACCTCCTGTTCTGCCTAGACCCATGATGCCTCCTCAAGGTTATATGCCTCCTCCAGGAGTACCACAGATGATGGCACCGCCTGGTGCTCCTCTACCTCCACCTCCACAAAATGGTATTCTGAGGCCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCTCCCAATTATAATGGACTACCTCCTCCTCCTCCTTATCATACAAATCCAGCTGCTCCACCAAGTGGTAATTTCAACAATCCAAACCTCAACAATCCGAATCCCAGTGCTGAATCTCCTGAAAGCAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

207

Amino Acids

22.4

Weight (kDa)

8.91

Isoelectric Point (pI)

74.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	1 - 38	1e-21	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	2 cut(s)	395, 554
AciI	CCGC	3 cut(s)	362, 444, 483
AcoI	YGGCCR	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	8 cut(s)	320, 338, 395, 431, 437, 470, 476, 554
AgsI	TTSAA	1 cut(s)	565
AjnI	CCWGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
Alw21I	GWGCWC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	175, 407
ApeKI	GCWGC	2 cut(s)	67, 542
AspS9I	GGNCC	2 cut(s)	446, 485
AvaII	GGWCC	2 cut(s)	446, 485
BalI	TGGCCA	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	79, 529
BccI	CCATC	2 cut(s)	61, 349
BciT130I	CCWGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	68, 543
BlsI	GCNGC	2 cut(s)	69, 544
Bme1390I	CCNGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
Bme18I	GGWCC	2 cut(s)	446, 485
BmgT120I	GGNCC	2 cut(s)	446, 485
BmiI	GGNNCC	3 cut(s)	360, 423, 462
BmrFI	CCNGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	2 cut(s)	240, 300
BmuI	ACTGGG	1 cut(s)	588
BpmI	CTGGAG	2 cut(s)	204, 321
BpuEI	CTTGAG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	8 cut(s)	320, 338, 395, 431, 437, 470, 476, 554
Bse1I	ACTGG	2 cut(s)	187, 594
Bse3DI	GCAATG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
BseDI	CCNNGG	1 cut(s)	5
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	8 cut(s)	320, 338, 395, 431, 437, 470, 476, 554
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	187, 594
BseRI	GAGGAG	6 cut(s)	306, 324, 363, 504, 507, 510
BseXI	GCAGC	2 cut(s)	79, 529
BshFI	GGCC	2 cut(s)	177, 409
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	373
BslI	CCNNNNNNNGG	8 cut(s)	320, 338, 395, 431, 437, 470, 476, 554
BsnI	GGCC	2 cut(s)	177, 409
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	3 cut(s)	362, 444, 483
BspANI	GGCC	2 cut(s)	177, 409
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	360, 423, 462
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	187, 594
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	404
BstENI	CCTNNNNNAGG	2 cut(s)	318, 336
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
BstSCI	CCNGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
BstV1I	GCAGC	2 cut(s)	79, 529
BsuRI	GGCC	2 cut(s)	177, 409
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	446, 485
CsiI	ACCWGGT	2 cut(s)	430, 469
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	2 cut(s)	247, 307
CviJI	RGCY	5 cut(s)	177, 409, 422, 461, 542
CviKI_1	RGCY	5 cut(s)	177, 409, 422, 461, 542
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	554
EaeI	YGGCCR	1 cut(s)	175
EciI	GGCGGA	2 cut(s)	459, 498
Eco47I	GGWCC	2 cut(s)	446, 485
EcoNI	CCTNNNNNAGG	2 cut(s)	318, 336
EcoRII	CCWGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
FaeI	CATG	2 cut(s)	250, 310
FatI	CATG	2 cut(s)	246, 306
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	68, 543
Fsp4HI	GCNGC	2 cut(s)	68, 543
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	68, 543
GsuI	CTGGAG	2 cut(s)	204, 321
HaeIII	GGCC	2 cut(s)	177, 409
Hin1II	CATG	2 cut(s)	250, 310
HinfI	GANTC	3 cut(s)	47, 589, 602
Hpy188I	TCNGA	3 cut(s)	156, 405, 588
Hpy188III	TCNNGA	2 cut(s)	44, 608
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	404
Hsp92II	CATG	2 cut(s)	250, 310
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	4 cut(s)	376, 427, 466, 550
Lsp1109I	GCAGC	2 cut(s)	79, 529
LweI	GCATC	2 cut(s)	240, 300
MabI	ACCWGGT	2 cut(s)	430, 469
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	4 cut(s)	119, 159, 496, 559
MluNI	TGGCCA	1 cut(s)	177
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	162, 213
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
MvaI	CCWGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	250, 310
NlaIV	GGNNCC	3 cut(s)	360, 423, 462
NmeAIII	GCCGAG	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	47, 589, 602
PflMI	CCANNNNNTGG	2 cut(s)	395, 554
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	69, 544
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
PspGI	CCWGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
PspN4I	GGNNCC	3 cut(s)	360, 423, 462
PspPI	GGNCC	2 cut(s)	446, 485
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	162, 213
SatI	GCNGC	2 cut(s)	68, 543
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	446, 485
ScrFI	CCNGG	7 cut(s)	261, 339, 366, 414, 432, 453, 471
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	2 cut(s)	430, 469
SfaNI	GCATC	2 cut(s)	240, 300
SinI	GGWCC	2 cut(s)	446, 485
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	119, 159, 496, 559
SsiI	CCGC	3 cut(s)	362, 444, 483
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	7 cut(s)	259, 337, 364, 412, 430, 451, 469
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	4 cut(s)	119, 159, 496, 559
TfiI	GAWTC	3 cut(s)	47, 589, 602
Tru1I	TTAA	2 cut(s)	162, 213
Tru9I	TTAA	2 cut(s)	162, 213
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	2 cut(s)	67, 542
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	2 cut(s)	395, 554
VpaK11BI	GGWCC	2 cut(s)	446, 485
XagI	CCTNNNNNAGG	2 cut(s)	318, 336
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.