Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Forward (+)

35811911 .. 35814488

Gene Structure 2578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1275200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCCAGGTATTACTGTGATTACTGCGATACTTATTTGACCCACGATTCGCCTTCAGTGAGAAAGCAACACAATGCTGGTTATAAACACAAGGCGAACGTGCGCGAATACTATCAGCAATTTGAGCAGGAACAAACCCAAAGTTTGATTGACCAAAGGATCAAGGAGCACCTTGGCAATTCTGCAGCTTACGGTGGTCAGCCTTACGGGCAAATTGGTGCTGCTTACAATCAACATCTAATGGCTCAGCCCCGTCTTCCTGGCATGCCACAAATGCTCCCCGGGATTAGGCCACCTGTTTTGCCAAGACCTCCTATACTCAATGCTCCAGGTTACAGCTCTGCTCCACACATGTTCCCGATGATGGCTCCGCCTGGTGCTCCCGGCATGCCTGGTCAATTAAGTGCCCCCATGAGGCCTCCTCCCGCTTTGAATCCTCCACCAGCAGTTCCTGGCAGCACAGCACCAAATGCTTCAAATGGTCCCCCTCCTATGGCTGCACCTCCGATGTATCAACCCAATCCAACAGCACCAACAAGTGGAGGCTATGAAAGTTTCAATCCGAATACTCAGCCTCCTGATTCTAGTCAGCAATCAATAGTAACCCGGAAAATGACTCATGTTGCAGCACCTTCATCGGAGAAGTCTTCTGCCATAACTTGGTCTAATGGGGCTTTCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

229

Amino Acids

24.64

Weight (kDa)

9.06

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	1 - 38	4.6e-22	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccB7I	CCANNNNNTGG	2 cut(s)	539, 660
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	371, 426
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	6 cut(s)	288, 364, 414, 493, 539, 660
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	433, 477, 559
AjnI	CCWGG	6 cut(s)	5, 259, 328, 373, 391, 451
AluBI	AGCT	2 cut(s)	188, 339
AluI	AGCT	2 cut(s)	188, 339
Alw21I	GWGCWC	2 cut(s)	171, 382
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	290, 416
ApeKI	GCWGC	5 cut(s)	185, 221, 456, 497, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	4 cut(s)	282, 283, 384, 607
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	248, 639
Bbv12I	GWGCWC	2 cut(s)	171, 382
BbvI	GCAGC	5 cut(s)	197, 208, 468, 484, 638
BccI	CCATC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BciT130I	CCWGG	6 cut(s)	7, 261, 330, 375, 393, 453
BcnI	CCSGG	4 cut(s)	282, 283, 384, 607
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	5 cut(s)	186, 222, 457, 498, 627
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	5 cut(s)	187, 223, 458, 499, 628
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	369, 484
BpiI	GAAGAC	2 cut(s)	248, 639
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuMI	CCSGG	4 cut(s)	282, 283, 384, 607
BsaJI	CCNNGG	4 cut(s)	5, 172, 280, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 559, 589
Bsc4I	CCNNNNNNNGG	6 cut(s)	288, 364, 414, 493, 539, 660
BseBI	CCWGG	6 cut(s)	7, 261, 330, 375, 393, 453
BseDI	CCNNGG	4 cut(s)	5, 172, 280, 281
BseLI	CCNNNNNNNGG	6 cut(s)	288, 364, 414, 493, 539, 660
BseMII	CTCAG	2 cut(s)	260, 584
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	5 cut(s)	197, 208, 468, 484, 638
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	292, 418
BsiHKAI	GWGCWC	2 cut(s)	171, 382
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	282, 384, 607
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	6 cut(s)	288, 364, 414, 493, 539, 660
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	292, 418
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	171, 382, 409
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	371, 426
BspANI	GGCC	2 cut(s)	292, 418
BspCNI	CTCAG	2 cut(s)	259, 583
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	369, 484
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	5, 172, 280, 281
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	6 cut(s)	7, 261, 330, 375, 393, 453
Bst4CI	ACNGT	2 cut(s)	17, 194
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	266, 389
BstDEI	CTNAG	2 cut(s)	246, 570
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 208, 274, 470
BstNI	CCWGG	6 cut(s)	7, 261, 330, 375, 393, 453
BstNSI	RCATGY	3 cut(s)	268, 355, 391
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	5 cut(s)	197, 208, 468, 484, 638
BstV2I	GAAGAC	2 cut(s)	248, 639
BsuRI	GGCC	2 cut(s)	292, 418
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	266, 389
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	482
Cfr9I	CCCGGG	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	6 cut(s)	265, 352, 388, 412, 620, 682
DdeI	CTNAG	2 cut(s)	246, 570
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	281
EcoRII	CCWGG	6 cut(s)	5, 259, 328, 373, 391, 451
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	6 cut(s)	268, 355, 391, 415, 623, 685
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	6 cut(s)	264, 351, 387, 411, 619, 681
FauI	CCCGC	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	186, 222, 457, 498, 627
Fsp4HI	GCNGC	5 cut(s)	186, 222, 457, 498, 627
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	186, 222, 457, 498, 627
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	292, 418
HapII	CCGG	3 cut(s)	282, 384, 607
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	268, 355, 391, 415, 623, 685
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	47, 433, 581, 616
HpaII	CCGG	3 cut(s)	282, 384, 607
Hpy188I	TCNGA	3 cut(s)	507, 564, 640
Hpy188III	TCNNGA	2 cut(s)	358, 578
HpyAV	CCTTC	2 cut(s)	63, 642
HpyCH4III	ACNGT	2 cut(s)	17, 194
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	185, 500, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 208, 274, 470
HpyF3I	CTNAG	2 cut(s)	246, 570
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	268, 355, 391, 415, 623, 685
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	6 cut(s)	166, 282, 331, 349, 373, 385
Lsp1109I	GCAGC	5 cut(s)	197, 208, 468, 484, 638
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	332, 601
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	248, 639
MhlI	GDGCHC	3 cut(s)	171, 382, 409
MluCI	AATT	4 cut(s)	119, 178, 213, 398
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	9 cut(s)	321, 408, 429, 432, 447, 498, 513, 536, 585
MseI	TTAA	1 cut(s)	401
MspI	CCGG	3 cut(s)	282, 384, 607
MvaI	CCWGG	6 cut(s)	7, 261, 330, 375, 393, 453
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	124, 208, 274, 470
NciI	CCSGG	4 cut(s)	282, 283, 384, 607
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	6 cut(s)	268, 355, 391, 415, 623, 685
NlaIV	GGNNCC	2 cut(s)	369, 484
NspI	RCATGY	3 cut(s)	268, 355, 391
PaeI	GCATGC	2 cut(s)	268, 391
PceI	AGGCCT	1 cut(s)	418
PciI	ACATGT	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	47, 433, 581
PflMI	CCANNNNNTGG	2 cut(s)	539, 660
PkrI	GCNGC	5 cut(s)	187, 223, 458, 499, 628
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PscI	ACATGT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	84
Psp6I	CCWGG	6 cut(s)	5, 259, 328, 373, 391, 451
PspGI	CCWGG	6 cut(s)	5, 259, 328, 373, 391, 451
PspN4I	GGNNCC	2 cut(s)	369, 484
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	5 cut(s)	186, 222, 457, 498, 627
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	610
SduI	GDGCHC	3 cut(s)	171, 382, 409
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	482
SmaI	CCCGGG	1 cut(s)	283
SphI	GCATGC	2 cut(s)	268, 391
Sse9I	AATT	4 cut(s)	119, 178, 213, 398
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	371, 426
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	17, 194
TaiI	ACGT	1 cut(s)	102
TasI	AATT	4 cut(s)	119, 178, 213, 398
TfiI	GAWTC	3 cut(s)	47, 433, 581
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	5 cut(s)	185, 221, 456, 497, 626
TspDTI	ATGAA	3 cut(s)	564, 624, 667
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	2 cut(s)	539, 660
VpaK11BI	GGWCC	1 cut(s)	482
XceI	RCATGY	3 cut(s)	268, 355, 391
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.