Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Reverse (-)

36470149 .. 36476215

Gene Structure 6067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATTTATTTGGCGGACGATTCGTGAGATTGTTAATTGAGCTGTTAAGAAGACGCAGCTGGATCAGAGTTAAGAAGGGTAGAGACACGAGAAGGTTTCCTGGACATAGGGAACTTCTTTTGTACCTTCAAGACTTTTGTGACTGGTTTGAGTTGAGGGATTTGATTAGGTTCAACACTAGGGTGGCTTATGTGGGAATGCTGGATCATGCAGTGGGATTCCAAGATTTGAAATGGCTTGTTAAGAGTGTGGAGAAGAAGACCCAGATTGTGATGGAAGAGGTGTTTGATTCTGTTGTTGTTGCCACTGGCCATTACTCTCAGCCTAGGTTGCCTTCCATTAAAGGAATGGATTCATGGAAGAGGAAGCAAATACACAGTCACATTTACAGGGTTCCCGATCCGTTCTGTGATGAGGTTGTGGTGGTGGTTGGAACTTCACAAAGTGGGCATGACATATCAATGGAGCTAGTGGAAGTGGCAAAGGCAGTGTACCTCAGCGCAAGATCCTTAAACAATATCTTTGAGGGCCTAGCCAAGGTCATTTCCAAGCATGATAACTTACATCTTCGTCCACAGATAGAGTCCCTCCAAGAAGATGGAAAGGTATTGTTTGTGGATGGTTCTTGGGTCATTGTAGACACTATCATCTATTGCACAGGGTATTCATACACATTCCCTTTTCTTGACACAAAAGGAATAGTAGCTATTGATGAGGACAGGGTGGGTCCTTTGTTCGAGCACACCTTCCCTCCCTCACTTGCTCCCTCTTTATCTTTTATTGGCATTCCTAATAAGATCATAGGGTTCCCTTTCTTTGAGTCACAAGCAAGATGGATAGCTCAACTGCTCTCGGGGAAAAGAAAATTGCCATCAAGGGATGCAATGATGCAGTCCATTAAGGACTTCTACCACTCGAGGGATGTTGCTAGCATCCCAAAGTACCAAACTCATGATATTGCAGAATTCGAGTATTGTGACAAATATGGAGATTATTCTGGGTTCCCACATTTGGAGGAATGGAGGAAAAAGCTTTTCCTTTTTTCCATAACAAATTATTACACCAACTTAGAAACATATAGAGATTCGTTGGATGATCATGACTTCCTTAAAGAGGCTCTTCAAAGTCCACATTTCACTCGACAAGAACAAGACACTCAAGATTTTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

391

Amino Acids

45.6

Weight (kDa)

6.4

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	35 - 172	6.7e-20	Flavin-binding monooxygenase-like
Pyr_redox_2	PF07992	93 - 229	1.4e-07	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	97 - 242	4.2e-14	Pyridine nucleotide-disulphide oxidoreductase
FMO-like	PF00743	188 - 306	5.1e-17	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	639
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	4 cut(s)	71, 213, 395, 501
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	3 cut(s)	125, 494, 944
AfiI	CCNNNNNNNGG	4 cut(s)	538, 919, 1012, 1114
AgsI	TTSAA	4 cut(s)	131, 175, 232, 1124
AjnI	CCWGG	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	43, 60, 469, 707, 842, 1033
AluI	AGCT	6 cut(s)	43, 60, 469, 707, 842, 1033
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	4 cut(s)	71, 213, 395, 501
Ama87I	CYCGRG	2 cut(s)	853, 916
AoxI	GGCC	2 cut(s)	310, 529
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	965
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
Asp700I	GAANNNNTTC	1 cut(s)	352
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	529, 728
AsuNHI	GCTAGC	1 cut(s)	929
AvaI	CYCGRG	2 cut(s)	853, 916
AvaII	GGWCC	1 cut(s)	728
AvrII	CCTAGG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	312
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	58, 266
Bbv12I	GWGCWC	1 cut(s)	744
BbvCI	CCTCAGC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	5 cut(s)	268, 593, 614, 828, 880
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	5 cut(s)	180, 327, 470, 533, 930
BisI	GCNGC	1 cut(s)	58
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	728
BmeT110I	CYCGRG	2 cut(s)	853, 916
BmgT120I	GGNCC	2 cut(s)	529, 728
BmiI	GGNNCC	4 cut(s)	396, 729, 809, 1004
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	871, 879, 942
BmtI	GCTAGC	1 cut(s)	933
BpiI	GAAGAC	2 cut(s)	58, 266
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	1143
BsaJI	CCNNGG	2 cut(s)	326, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	4 cut(s)	538, 919, 1012, 1114
Bse1I	ACTGG	2 cut(s)	149, 313
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	326, 537
BseGI	GGATG	5 cut(s)	625, 886, 928, 933, 1099
BseLI	CCNNNNNNNGG	4 cut(s)	538, 919, 1012, 1114
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	2 cut(s)	335, 511
BseNI	ACTGG	2 cut(s)	149, 313
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	2 cut(s)	312, 531
BsiHKAI	GWGCWC	1 cut(s)	744
BsiHKCI	CYCGRG	2 cut(s)	853, 916
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	4 cut(s)	538, 919, 1012, 1114
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	2 cut(s)	204, 786
BsnI	GGCC	2 cut(s)	312, 531
BsoBI	CYCGRG	2 cut(s)	853, 916
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp143I	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	312, 531
BspCNI	CTCAG	2 cut(s)	334, 510
BspHI	TCATGA	2 cut(s)	952, 1099
BspLI	GGNNCC	4 cut(s)	396, 729, 809, 1004
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	4 cut(s)	71, 213, 395, 501
BspQI	GCTCTTC	1 cut(s)	1125
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	149, 313
BssECI	CCNNGG	2 cut(s)	326, 537
BssMI	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	326, 537
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	273, 356, 1125
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	3 cut(s)	321, 497, 1069
BstENI	CCTNNNNNAGG	2 cut(s)	536, 1112
BstF5I	GGATG	5 cut(s)	625, 886, 928, 933, 1099
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	6 cut(s)	66, 208, 403, 509, 801, 1099
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	58, 266
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	312, 531
BtsCI	GGATG	5 cut(s)	625, 886, 928, 933, 1099
BtsI	GCAGTG	2 cut(s)	219, 495
BtsIMutI	CAGTG	3 cut(s)	219, 306, 495
Cac8I	GCNNGC	1 cut(s)	931
CciI	TCATGA	2 cut(s)	952, 1099
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	529, 728
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	124, 493, 943
CviAII	CATG	6 cut(s)	209, 357, 452, 554, 953, 1100
CviQI	GTAC	3 cut(s)	124, 493, 943
DdeI	CTNAG	3 cut(s)	321, 497, 1069
DpnI	GATC	6 cut(s)	65, 207, 402, 508, 800, 1098
DpnII	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	273, 356, 1125
EarI	CTCTTC	3 cut(s)	273, 356, 1125
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	326, 537
Eco47I	GGWCC	1 cut(s)	728
Eco88I	CYCGRG	2 cut(s)	853, 916
EcoNI	CCTNNNNNAGG	2 cut(s)	536, 1112
EcoO109I	RGGNCCY	2 cut(s)	529, 728
EcoRI	GAATTC	1 cut(s)	965
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	326, 537
ErhI	CCWWGG	2 cut(s)	326, 537
FaeI	CATG	6 cut(s)	212, 360, 455, 557, 956, 1103
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	6 cut(s)	208, 356, 451, 553, 952, 1099
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	5 cut(s)	632, 893, 920, 935, 1106
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	5 cut(s)	180, 327, 470, 533, 930
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	312, 531
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	212, 360, 455, 557, 956, 1103
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	1031
HinfI	GANTC	7 cut(s)	21, 219, 290, 353, 584, 821, 1085
Hpy166II	GTNNAC	4 cut(s)	493, 575, 640, 1130
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	7 cut(s)	25, 131, 398, 686, 953, 1100, 1160
Hpy8I	GTNNAC	4 cut(s)	493, 575, 640, 1130
HpyAV	CCTTC	5 cut(s)	70, 87, 137, 345, 757
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	5 cut(s)	212, 657, 884, 892, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	3 cut(s)	321, 497, 1069
Hsp92II	CATG	6 cut(s)	212, 360, 455, 557, 956, 1103
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
LguI	GCTCTTC	1 cut(s)	1125
LmnI	GCTCC	2 cut(s)	466, 769
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	3 cut(s)	871, 879, 942
MaeI	CTAG	5 cut(s)	180, 327, 470, 533, 930
MaeIII	GTNAC	4 cut(s)	140, 380, 822, 977
MalI	GATC	6 cut(s)	65, 207, 402, 508, 800, 1098
MboI	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
MboII	GAAGA	8 cut(s)	63, 268, 271, 290, 373, 560, 608, 1112
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	744
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	4 cut(s)	36, 866, 965, 1054
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	593, 830
MmeI	TCCRAC	2 cut(s)	412, 1071
Mox20I	TGGCCA	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	8 cut(s)	35, 47, 72, 243, 342, 512, 900, 1110
MslI	CAYNNNNRTG	2 cut(s)	182, 461
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	2 cut(s)	204, 786
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	6 cut(s)	212, 360, 455, 557, 956, 1103
NlaIV	GGNNCC	4 cut(s)	396, 729, 809, 1004
NmuCI	GTSAC	4 cut(s)	140, 380, 822, 977
OliI	CACNNNNGTG	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	916
PagI	TCATGA	2 cut(s)	952, 1099
PciSI	GCTCTTC	1 cut(s)	1125
PctI	GAATGC	2 cut(s)	204, 786
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	5 cut(s)	21, 219, 290, 353, 1085
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	2 cut(s)	592, 829
PpsI	GAGTC	2 cut(s)	592, 829
PpuMI	RGGWCCY	1 cut(s)	728
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	396, 729, 809, 1004
PspPI	GGNCC	2 cut(s)	529, 728
PspPPI	RGGWCCY	1 cut(s)	728
PspXI	VCTCGAGB	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	3 cut(s)	125, 494, 944
RsaNI	GTAC	3 cut(s)	124, 493, 943
RseI	CAYNNNNRTG	2 cut(s)	182, 461
SapI	GCTCTTC	1 cut(s)	1125
SaqAI	TTAA	8 cut(s)	35, 47, 72, 243, 342, 512, 900, 1110
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	6 cut(s)	63, 205, 400, 506, 798, 1096
Sau96I	GGNCC	2 cut(s)	529, 728
SchI	GAGTC	2 cut(s)	593, 830
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	3 cut(s)	871, 879, 942
Sfr274I	CTCGAG	1 cut(s)	916
SinI	GGWCC	1 cut(s)	728
SlaI	CTCGAG	1 cut(s)	916
SmiMI	CAYNNNNRTG	2 cut(s)	182, 461
SmlI	CTYRAG	2 cut(s)	916, 1158
SmoI	CTYRAG	2 cut(s)	916, 1158
Sse9I	AATT	4 cut(s)	36, 866, 965, 1054
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	5 cut(s)	180, 327, 470, 533, 930
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	326, 537
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	738, 917, 969, 1141
TasI	AATT	4 cut(s)	36, 866, 965, 1054
TfiI	GAWTC	5 cut(s)	21, 219, 290, 353, 1085
Tru1I	TTAA	8 cut(s)	35, 47, 72, 243, 342, 512, 900, 1110
Tru9I	TTAA	8 cut(s)	35, 47, 72, 243, 342, 512, 900, 1110
TscAI	CASTG	3 cut(s)	219, 313, 495
TseFI	GTSAC	4 cut(s)	140, 380, 822, 977
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	4 cut(s)	140, 380, 822, 977
TspDTI	ATGAA	2 cut(s)	345, 657
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	219, 313, 495
VpaK11BI	GGWCC	1 cut(s)	728
XagI	CCTNNNNNAGG	2 cut(s)	536, 1112
XapI	RAATTY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	916
XmaJI	CCTAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	5 cut(s)	180, 327, 470, 533, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.