Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Reverse (-)

36484143 .. 36484857

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0227100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGTCTGAGAGGTGCCAATCCAAAAGTGTGTGTGTAATTGGGGCTGGACCCTCAGGGCTTGTTGCTGCAAGAGAGCTAAAGAAAGAAGGTCACAGTGTGGTGGTGTTGGAACAAAACCACGATGTAGGAGGTCAATGGCTGTATGATCCAAATGTGGAGGGAGAGGACCCCTTGGGAAGGAACACCACGAGTCCTCCTACTAATCATAATTCCCATCATGTAAAAGTGCACAGTAGTGTTTATACTTCTTTAAGGCTCGGATCTCCAAGAGAGATCATGGGATTCACTGATACAATTCTCTCTCTCTCTCTCTCTCTCTCGCTCGACCGAAACCGAAGAACAGAGCAAAGGCTCTTCGGTCTCTCTCTACCTCCACCGGCCACCAAACGGCGTCGAACCACTTCCTTTTGCTTCGTCTCAGCCTTGCGCAGCTGCCAGAGGCAGCCTTGCACCGTGACACGGCCACCAGCGGCGGCGGGAAACTCCGCCCGGTTTGAGCTCGTTTTGGAACCAAGCTTGATATCTCAAGCTACCGGTCACCAATCCTCACCAAAATCCATCCACAAGCTTGCCTCAACTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

195

Amino Acids

21.23

Weight (kDa)

9.66

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thi4	PF01946	9 - 47	6.4e-06	Thi4 family
HI0933_like	PF03486	10 - 44	1.7e-06	HI0933-like protein Rossmann domain
FAD_binding_3	PF01494	10 - 41	2.2e-06	FAD binding domain
Pyr_redox_2	PF07992	10 - 50	8.5e-06	Pyridine nucleotide-disulphide oxidoreductase
DAO	PF01266	11 - 45	9.8e-08	FAD dependent oxidoreductase
FAD_oxidored	PF12831	11 - 47	4.7e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	13 - 48	5.8e-11	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	4 cut(s)	473, 476, 479, 489
AclWI	GGATC	2 cut(s)	143, 271
AcoI	YGGCCR	2 cut(s)	381, 464
AcyI	GRCGYC	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	180, 390, 462
AgeI	ACCGGT	1 cut(s)	536
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	6 cut(s)	79, 435, 502, 519, 533, 571
AluI	AGCT	6 cut(s)	79, 435, 502, 519, 533, 571
Alw21I	GWGCWC	2 cut(s)	234, 504
Alw26I	GTCTC	2 cut(s)	368, 424
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	143, 271
AoxI	GGCC	2 cut(s)	381, 464
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	4 cut(s)	68, 432, 435, 445
AsiGI	ACCGGT	1 cut(s)	536
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	50, 169
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	533, 543
AvaII	GGWCC	2 cut(s)	50, 169
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	234, 504
BbvI	GCAGC	4 cut(s)	55, 422, 444, 457
BccI	CCATC	2 cut(s)	225, 569
BceAI	ACGGC	2 cut(s)	407, 479
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	368, 424
BisI	GCNGC	6 cut(s)	69, 433, 436, 446, 474, 477
BlsI	GCNGC	6 cut(s)	70, 434, 437, 447, 475, 478
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	50, 169
BmgT120I	GGNCC	2 cut(s)	50, 169
BmiI	GGNNCC	4 cut(s)	17, 52, 171, 513
BmrFI	CCNGG	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 390, 462
Bse118I	RCCGGY	2 cut(s)	379, 536
Bse21I	CCTNAGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	180, 390, 462
BseMII	CTCAG	2 cut(s)	69, 435
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	4 cut(s)	55, 422, 444, 457
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	383, 466
BshNI	GGYRCC	1 cut(s)	15
BshTI	ACCGGT	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	234, 504
BsiSI	CCGG	3 cut(s)	380, 493, 537
BslI	CCNNNNNNNGG	3 cut(s)	180, 390, 462
BsmAI	GTCTC	2 cut(s)	368, 424
BsmBI	CGTCTC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	383, 466
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	234, 504
Bsp143I	GATC	3 cut(s)	148, 263, 276
BspACI	CCGC	4 cut(s)	473, 476, 479, 489
BspANI	GGCC	2 cut(s)	383, 466
BspCNI	CTCAG	2 cut(s)	68, 434
BspLI	GGNNCC	4 cut(s)	17, 52, 171, 513
BspPI	GGATC	2 cut(s)	143, 271
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	368
BsrFI	RCCGGY	2 cut(s)	379, 536
BssAI	RCCGGY	2 cut(s)	379, 536
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	148, 263, 276
BssNI	GRCGYC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	98, 236, 457
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	9, 55, 421
BstEII	GGTNACC	1 cut(s)	539
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	3 cut(s)	151, 266, 279
BstMAI	GTCTC	2 cut(s)	368, 424
BstMBI	GATC	3 cut(s)	148, 263, 276
BstMCI	CGRYCG	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	55, 422, 444, 457
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	383, 466
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	103, 288
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	2 cut(s)	379, 536
Cfr13I	GGNCC	2 cut(s)	50, 169
CseI	GACGC	1 cut(s)	383
CspAI	ACCGGT	1 cut(s)	536
CviAII	CATG	2 cut(s)	221, 280
DdeI	CTNAG	3 cut(s)	9, 55, 421
DpnI	GATC	3 cut(s)	150, 265, 278
DpnII	GATC	3 cut(s)	148, 263, 276
DraIII	CACNNNGTG	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	381, 464
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	50, 169
Eco53kI	GAGCTC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	2 cut(s)	224, 283
FaiI	YATR	5 cut(s)	147, 210, 222, 246, 281
FatI	CATG	2 cut(s)	220, 279
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	6 cut(s)	69, 433, 436, 446, 474, 477
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	6 cut(s)	69, 433, 436, 446, 474, 477
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	6 cut(s)	69, 433, 436, 446, 474, 477
HaeIII	GGCC	2 cut(s)	383, 466
HapII	CCGG	3 cut(s)	380, 493, 537
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	224, 283
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	517, 569
HinfI	GANTC	2 cut(s)	193, 285
HpaII	CCGG	3 cut(s)	380, 493, 537
HphI	GGTGA	2 cut(s)	533, 543
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	10, 263
Hpy188III	TCNNGA	1 cut(s)	585
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	2 cut(s)	83, 174
HpyCH4III	ACNGT	3 cut(s)	98, 236, 457
HpyCH4V	TGCA	3 cut(s)	71, 232, 453
HpyF3I	CTNAG	3 cut(s)	9, 55, 421
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	224, 283
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	3 cut(s)	148, 263, 276
LguI	GCTCTTC	1 cut(s)	362
LpnPI	CCDG	7 cut(s)	33, 42, 393, 452, 483, 506, 550
Lsp1109I	GCAGC	4 cut(s)	55, 422, 444, 457
MaeIII	GTNAC	3 cut(s)	92, 457, 539
MalI	GATC	3 cut(s)	150, 265, 278
MboI	GATC	3 cut(s)	148, 263, 276
MboII	GAAGA	2 cut(s)	349, 351
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	2 cut(s)	234, 504
MluCI	AATT	3 cut(s)	39, 211, 297
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	435, 473
MspI	CCGG	3 cut(s)	380, 493, 537
MspR9I	CCNGG	1 cut(s)	493
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	148, 263, 276
NlaIII	CATG	2 cut(s)	224, 283
NlaIV	GGNNCC	4 cut(s)	17, 52, 171, 513
NmuCI	GTSAC	3 cut(s)	92, 457, 539
NsbI	TGCGCA	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	70, 434, 437, 447, 475, 478
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	17, 52, 171, 513
PspPI	GGNCC	2 cut(s)	50, 169
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	6 cut(s)	69, 433, 436, 446, 474, 477
Sau3AI	GATC	3 cut(s)	148, 263, 276
Sau96I	GGNCC	2 cut(s)	50, 169
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	2 cut(s)	234, 504
SinI	GGWCC	2 cut(s)	50, 169
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
Sse9I	AATT	3 cut(s)	39, 211, 297
SsiI	CCGC	4 cut(s)	473, 476, 479, 489
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	98, 236, 457
TaqI	TCGA	2 cut(s)	327, 397
TaqII	GACCGA	2 cut(s)	345, 350
TasI	AATT	3 cut(s)	39, 211, 297
TauI	GCSGC	2 cut(s)	476, 479
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	103, 295
TseFI	GTSAC	3 cut(s)	92, 457, 539
TseI	GCWGC	4 cut(s)	68, 432, 435, 445
Tsp45I	GTSAC	3 cut(s)	92, 457, 539
TspRI	CASTG	2 cut(s)	103, 295
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	50, 169
XagI	CCTNNNNNAGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.