Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Forward (+)

41479343 .. 41481659

Gene Structure 2317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1297300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCAAGGTATTACTGTGATTACTGCGATACTTATTTGACCCACGATTCGCCTTCAGTGAGAAAGCAACACAATGCTGGTTACAAACACAAGGCGAATGTGCGGGAGTACTATCAGCAATTTGAGCAGGAACAAACCCAAAGTTTGATTGACCAAAGGATCAAAGAGCACCTTGGCAATTCTGCAGCTTATGGTGGTCAGCCTTACGGGAATATTGGTGCAGCTTACAGTCAGCATCTAATGTCTCAGCCCCGTCTTCCTGGCATGCCGCAAATGATGGCTCCAGGGATTAGGCCTCCTGTTTTGCCAAGACCTCCTGTACTCAGTGCTCCAGGTTACGGCTCTGCTCCACACATGATCCCAATGATGGCTCCACCAGGTGCTCCCAGCATGCCTGGTCAATTAAATGCTCCCATGAGGCCTCCTCCTGCTTTAAATCCTCCACCAGCAGTTCCTGGCAGCGCAGCACCAAATACTTCTAATGGTGCCCCTCCTATGGCTGCACCTCCGATGTATCAACCCAATCCAACTGCACCAACGAGTGGAGGCTATGAAAGTTTCAATCCGAATACTCAACCGCCTGATTCTACACCTTCGTTGGAGAAGTCTTCTGCCATGGTTCGTGCAAAGTGGAGATTGTGCAATTTAACATTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

220

Amino Acids

23.73

Weight (kDa)

9.13

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	1 - 38	4.3e-22	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	3 cut(s)	103, 269, 578
AclWI	GGATC	2 cut(s)	167, 352
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	110, 321
AfiI	CCNNNNNNNGG	4 cut(s)	338, 367, 496, 542
AgsI	TTSAA	1 cut(s)	562
AjnI	CCWGG	6 cut(s)	259, 283, 331, 376, 394, 454
AluBI	AGCT	2 cut(s)	188, 224
AluI	AGCT	2 cut(s)	188, 224
Alw21I	GWGCWC	3 cut(s)	171, 331, 385
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	167, 352
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	293, 419
ApeKI	GCWGC	5 cut(s)	185, 221, 459, 464, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspLEI	GCGC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	248, 600
Bbv12I	GWGCWC	3 cut(s)	171, 331, 385
BbvI	GCAGC	5 cut(s)	197, 233, 471, 476, 487
BccI	CCATC	2 cut(s)	271, 361
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	6 cut(s)	261, 285, 333, 378, 396, 456
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	6 cut(s)	186, 222, 269, 460, 465, 501
BlsI	GCNGC	6 cut(s)	187, 223, 270, 461, 466, 502
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	6 cut(s)	261, 285, 333, 378, 396, 456
BmiI	GGNNCC	3 cut(s)	282, 372, 487
BmrFI	CCNGG	6 cut(s)	261, 285, 333, 378, 396, 456
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	248, 600
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	2 cut(s)	267, 315
BsaJI	CCNNGG	4 cut(s)	5, 172, 284, 615
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 367, 496, 542
BseBI	CCWGG	6 cut(s)	261, 285, 333, 378, 396, 456
BseDI	CCNNGG	4 cut(s)	5, 172, 284, 615
BseLI	CCNNNNNNNGG	4 cut(s)	338, 367, 496, 542
BseMII	CTCAG	2 cut(s)	260, 337
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	197, 233, 471, 476, 487
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	3 cut(s)	240, 486, 516
BshFI	GGCC	2 cut(s)	295, 421
BshNI	GGYRCC	1 cut(s)	485
BsiHKAI	GWGCWC	3 cut(s)	171, 331, 385
BslI	CCNNNNNNNGG	4 cut(s)	338, 367, 496, 542
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	295, 421
Bsp1286I	GDGCHC	4 cut(s)	171, 331, 385, 490
Bsp143I	GATC	2 cut(s)	159, 357
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	3 cut(s)	103, 269, 578
BspANI	GGCC	2 cut(s)	295, 421
BspCNI	CTCAG	2 cut(s)	259, 336
BspLI	GGNNCC	3 cut(s)	282, 372, 487
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	2 cut(s)	167, 352
BspT107I	GGYRCC	1 cut(s)	485
BssECI	CCNNGG	4 cut(s)	5, 172, 284, 615
BssMI	GATC	2 cut(s)	159, 357
BssT1I	CCWWGG	3 cut(s)	5, 172, 615
Bst2UI	CCWGG	6 cut(s)	261, 285, 333, 378, 396, 456
Bst4CI	ACNGT	2 cut(s)	17, 230
BstC8I	GCNNGC	2 cut(s)	266, 392
BstDEI	CTNAG	2 cut(s)	246, 323
BstDSI	CCRYGG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	2 cut(s)	162, 360
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	159, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	6 cut(s)	261, 285, 333, 378, 396, 456
BstNSI	RCATGY	2 cut(s)	268, 394
BstSCI	CCNGG	6 cut(s)	259, 283, 331, 376, 394, 454
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	5 cut(s)	197, 233, 471, 476, 487
BstV2I	GAAGAC	2 cut(s)	248, 600
BsuRI	GGCC	2 cut(s)	295, 421
BtgI	CCRYGG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	63, 331
Cac8I	GCNNGC	2 cut(s)	266, 392
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	464
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	109, 320
CviAII	CATG	5 cut(s)	265, 355, 391, 415, 616
CviQI	GTAC	2 cut(s)	109, 320
DdeI	CTNAG	2 cut(s)	246, 323
DpnI	GATC	2 cut(s)	161, 359
DpnII	GATC	2 cut(s)	159, 357
DraI	TTTAAA	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	380
Eco130I	CCWWGG	3 cut(s)	5, 172, 615
Eco147I	AGGCCT	2 cut(s)	295, 421
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	6 cut(s)	259, 283, 331, 376, 394, 454
EcoT14I	CCWWGG	3 cut(s)	5, 172, 615
ErhI	CCWWGG	3 cut(s)	5, 172, 615
FaeI	CATG	5 cut(s)	268, 358, 394, 418, 619
FaiI	YATR	8 cut(s)	192, 266, 356, 392, 416, 497, 552, 617
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	5 cut(s)	264, 354, 390, 414, 615
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	6 cut(s)	186, 222, 269, 460, 465, 501
Fsp4HI	GCNGC	6 cut(s)	186, 222, 269, 460, 465, 501
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	6 cut(s)	186, 222, 269, 460, 465, 501
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	2 cut(s)	267, 315
HaeIII	GGCC	2 cut(s)	295, 421
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	5 cut(s)	268, 358, 394, 418, 619
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	47, 584
Hpy188I	TCNGA	2 cut(s)	510, 567
HpyAV	CCTTC	2 cut(s)	63, 603
HpyCH4III	ACNGT	2 cut(s)	17, 230
HpyCH4V	TGCA	6 cut(s)	185, 221, 503, 533, 626, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	246, 323
Hsp92II	CATG	5 cut(s)	268, 358, 394, 418, 619
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	159, 357
LmnI	GCTCC	6 cut(s)	286, 334, 352, 376, 388, 415
Lsp1109I	GCAGC	5 cut(s)	197, 233, 471, 476, 487
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	80, 335
MalI	GATC	2 cut(s)	161, 359
MboI	GATC	2 cut(s)	159, 357
MboII	GAAGA	2 cut(s)	248, 600
MhlI	GDGCHC	4 cut(s)	171, 331, 385, 490
MluCI	AATT	4 cut(s)	119, 178, 401, 643
MmeI	TCCRAC	2 cut(s)	551, 579
MnlI	CCTC	9 cut(s)	306, 324, 411, 432, 435, 450, 501, 516, 539
MseI	TTAA	3 cut(s)	404, 434, 647
MspR9I	CCNGG	6 cut(s)	261, 285, 333, 378, 396, 456
MvaI	CCWGG	6 cut(s)	261, 285, 333, 378, 396, 456
MwoI	GCNNNNNNNGC	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	159, 357
NlaIII	CATG	5 cut(s)	268, 358, 394, 418, 619
NlaIV	GGNNCC	3 cut(s)	282, 372, 487
NspI	RCATGY	2 cut(s)	268, 394
PaeI	GCATGC	2 cut(s)	268, 394
PceI	AGGCCT	2 cut(s)	295, 421
PfeI	GAWTC	2 cut(s)	47, 584
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	6 cut(s)	187, 223, 270, 461, 466, 502
Psp6I	CCWGG	6 cut(s)	259, 283, 331, 376, 394, 454
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	6 cut(s)	259, 283, 331, 376, 394, 454
PspN4I	GGNNCC	3 cut(s)	282, 372, 487
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	110, 321
RsaNI	GTAC	2 cut(s)	109, 320
SaqAI	TTAA	3 cut(s)	404, 434, 647
SatI	GCNGC	6 cut(s)	186, 222, 269, 460, 465, 501
Sau3AI	GATC	2 cut(s)	159, 357
ScaI	AGTACT	1 cut(s)	110
ScrFI	CCNGG	6 cut(s)	261, 285, 333, 378, 396, 456
SduI	GDGCHC	4 cut(s)	171, 331, 385, 490
SetI	ASST	9 cut(s)	11, 174, 190, 226, 316, 337, 382, 508, 595
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	183
SphI	GCATGC	2 cut(s)	268, 394
Sse9I	AATT	4 cut(s)	119, 178, 401, 643
SseBI	AGGCCT	2 cut(s)	295, 421
SsiI	CCGC	3 cut(s)	103, 269, 578
SspI	AATATT	1 cut(s)	214
StuI	AGGCCT	2 cut(s)	295, 421
StyD4I	CCNGG	6 cut(s)	259, 283, 331, 376, 394, 454
StyI	CCWWGG	3 cut(s)	5, 172, 615
TaaI	ACNGT	2 cut(s)	17, 230
TasI	AATT	4 cut(s)	119, 178, 401, 643
TatI	WGTACW	2 cut(s)	108, 319
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	47, 584
Tru1I	TTAA	3 cut(s)	404, 434, 647
Tru9I	TTAA	3 cut(s)	404, 434, 647
TscAI	CASTG	2 cut(s)	63, 331
TseI	GCWGC	5 cut(s)	185, 221, 459, 464, 500
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	63, 331
Van91I	CCANNNNNTGG	1 cut(s)	542
XceI	RCATGY	2 cut(s)	268, 394
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.