Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Forward (+)

53986800 .. 53989114

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG340300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTCAAGTTTTTGTTTCTTGGTGTTTTGCAGCCTTCGGTTCGAAAGCAGCACAATGCGGGTTACAAACACAAGGCAAATGTGCGGCAGTACTATCAGCAATTTGAGGAGCAGCAAACTCAGAGTTTGATTGACCAAAGGATTAAGGAACATCTTGGCCAGACTGCAGCTTACGGGCAAGTTGGCGCAGCGTACAATCAGCATCTAATGGCTCGGCCTCGCCTTCCTGTTCTACCAAACCCTATGATGCCACAAATGCCTGGAGGTCCACCAATGGCTCCAGGGATTAGACTTCCTGTTTTGCCAAGACCTGGAGGTCCACCAATGGCTCCAGGAGTATACCAACAACAACCCATGATGCAAATGATGGCTCCACCTGGGGCTCCTGGGATGCCTGGTCAAGTAAATATTCCCATGAGGCCTCCCACTTTGAGTGCTCCACCATCAGTTCCCGGCAGCGCACCACCCAATGCTACTAACGGTGCCCCTTCTGTGGCTGCACCCCCAATGTATCAACCTAATCCAACAGCGCCATCAAGCGGAGGCTATGATAGTTTCAATTTAAATGCACAGCCTCCTGAATCTAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

197

Amino Acids

21.15

Weight (kDa)

9.92

Isoelectric Point (pI)

68.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	11 - 32	1.9e-07	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	3 cut(s)	59, 85, 540
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	2 cut(s)	92, 194
AfiI	CCNNNNNNNGG	3 cut(s)	311, 493, 539
AgsI	TTSAA	2 cut(s)	7, 559
AjnI	CCWGG	7 cut(s)	259, 280, 310, 331, 376, 385, 394
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	439
AoxI	GGCC	3 cut(s)	157, 215, 419
ApeKI	GCWGC	7 cut(s)	31, 49, 112, 167, 188, 456, 497
AspLEI	GCGC	3 cut(s)	188, 461, 532
AspS9I	GGNCC	2 cut(s)	266, 317
AsuC2I	CCSGG	1 cut(s)	453
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	266, 317
BaeGI	GKGCMC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	7 cut(s)	43, 61, 124, 179, 200, 468, 484
BccI	CCATC	3 cut(s)	361, 451, 541
BciT130I	CCWGG	7 cut(s)	261, 282, 312, 333, 378, 387, 396
BcnI	CCSGG	1 cut(s)	453
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	533
BisI	GCNGC	8 cut(s)	32, 50, 86, 113, 168, 189, 457, 498
BlsI	GCNGC	8 cut(s)	33, 51, 87, 114, 169, 190, 458, 499
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	8 cut(s)	261, 282, 312, 333, 378, 387, 396, 453
Bme18I	GGWCC	2 cut(s)	266, 317
BmgT120I	GGNCC	2 cut(s)	266, 317
BmiI	GGNNCC	5 cut(s)	279, 330, 372, 384, 484
BmrFI	CCNGG	8 cut(s)	261, 282, 312, 333, 378, 387, 396, 453
BmsI	GCATC	4 cut(s)	211, 237, 348, 381
BpmI	CTGGAG	4 cut(s)	264, 282, 315, 333
Bpu14I	TTCGAA	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	281, 377, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 493, 539
BseBI	CCWGG	7 cut(s)	261, 282, 312, 333, 378, 387, 396
BseDI	CCNNGG	3 cut(s)	281, 377, 386
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	311, 493, 539
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	7 cut(s)	43, 61, 124, 179, 200, 468, 484
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	159, 217, 421
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	311, 493, 539
BsnI	GGCC	3 cut(s)	159, 217, 421
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	385, 439, 487
BspACI	CCGC	3 cut(s)	59, 85, 540
BspANI	GGCC	3 cut(s)	159, 217, 421
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	5 cut(s)	279, 330, 372, 384, 484
BspMAI	CTGCAG	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	281, 377, 386
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	7 cut(s)	261, 282, 312, 333, 378, 387, 396
Bst4CI	ACNGT	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	3 cut(s)	188, 461, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	7 cut(s)	261, 282, 312, 333, 378, 387, 396
BstSCI	CCNGG	8 cut(s)	259, 280, 310, 331, 376, 385, 394, 451
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	7 cut(s)	43, 61, 124, 179, 200, 468, 484
BstZ17I	GTATAC	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	159, 217, 421
BtsCI	GGATG	1 cut(s)	396
CfoI	GCGC	3 cut(s)	188, 461, 532
Cfr13I	GGNCC	2 cut(s)	266, 317
Csp6I	GTAC	2 cut(s)	91, 193
CviAII	CATG	2 cut(s)	355, 415
CviQI	GTAC	2 cut(s)	91, 193
DdeI	CTNAG	1 cut(s)	120
DraI	TTTAAA	1 cut(s)	564
DrdI	GACNNNNNNGTC	1 cut(s)	315
DseDI	GACNNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	266, 317
EcoRII	CCWGG	7 cut(s)	259, 280, 310, 331, 376, 385, 394
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	2 cut(s)	358, 418
FaiI	YATR	5 cut(s)	245, 340, 356, 416, 549
FatI	CATG	2 cut(s)	354, 414
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	8 cut(s)	32, 50, 86, 113, 168, 189, 457, 498
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	8 cut(s)	32, 50, 86, 113, 168, 189, 457, 498
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	3 cut(s)	187, 460, 531
GluI	GCNGC	8 cut(s)	32, 50, 86, 113, 168, 189, 457, 498
GsuI	CTGGAG	4 cut(s)	264, 282, 315, 333
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	159, 217, 421
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	3 cut(s)	188, 461, 532
Hin1II	CATG	2 cut(s)	358, 418
Hin6I	GCGC	3 cut(s)	186, 459, 530
HinP1I	GCGC	3 cut(s)	186, 459, 530
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	453
Hpy166II	GTNNAC	3 cut(s)	269, 320, 340
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	3 cut(s)	269, 320, 340
HpyAV	CCTTC	3 cut(s)	45, 233, 498
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	5 cut(s)	31, 167, 361, 500, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	358, 418
HspAI	GCGC	3 cut(s)	186, 459, 530
LmnI	GCTCC	6 cut(s)	109, 283, 334, 376, 388, 442
Lsp1109I	GCAGC	7 cut(s)	43, 61, 124, 179, 200, 468, 484
LweI	GCATC	4 cut(s)	211, 237, 348, 381
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	385, 439, 487
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	2 cut(s)	101, 559
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	8 cut(s)	100, 228, 257, 308, 411, 432, 536, 585
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	2 cut(s)	144, 563
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	8 cut(s)	261, 282, 312, 333, 378, 387, 396, 453
MvaI	CCWGG	7 cut(s)	261, 282, 312, 333, 378, 387, 396
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	453
NlaIII	CATG	2 cut(s)	358, 418
NlaIV	GGNNCC	5 cut(s)	279, 330, 372, 384, 484
NmeAIII	GCCGAG	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	8 cut(s)	33, 51, 87, 114, 169, 190, 458, 499
Psp6I	CCWGG	7 cut(s)	259, 280, 310, 331, 376, 385, 394
PspGI	CCWGG	7 cut(s)	259, 280, 310, 331, 376, 385, 394
PspN4I	GGNNCC	5 cut(s)	279, 330, 372, 384, 484
PspPI	GGNCC	2 cut(s)	266, 317
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	92, 194
RsaNI	GTAC	2 cut(s)	91, 193
SaqAI	TTAA	2 cut(s)	144, 563
SatI	GCNGC	8 cut(s)	32, 50, 86, 113, 168, 189, 457, 498
Sau96I	GGNCC	2 cut(s)	266, 317
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	8 cut(s)	261, 282, 312, 333, 378, 387, 396, 453
SduI	GDGCHC	3 cut(s)	385, 439, 487
SetI	ASST	6 cut(s)	172, 268, 313, 319, 379, 520
SfaNI	GCATC	4 cut(s)	211, 237, 348, 381
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	2 cut(s)	266, 317
SmiI	ATTTAAAT	1 cut(s)	564
Sse9I	AATT	2 cut(s)	101, 559
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	3 cut(s)	59, 85, 540
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	8 cut(s)	259, 280, 310, 331, 376, 385, 394, 451
SwaI	ATTTAAAT	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	101, 559
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	144, 563
Tru9I	TTAA	2 cut(s)	144, 563
TseI	GCWGC	7 cut(s)	31, 49, 112, 167, 188, 456, 497
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	266, 317
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.