Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013023

Physical Location & Seq

Genomic Coordinates Forward (+)

20060579 .. 20062614

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCCTCGGTACTACTGCGATTACTGCGATACGTATTTGACTCACGATTCGCCTTCGGTTCGAAAGCAGCACAATGCGGGTTACAAACACAAGGCAAATGTGCGGCAGTACTACCAGCAATTTGAGGAGCAACAGAATCAGAGTTTGATTGACCAGAAGATCAAGGAACTTATTGGCCAAAATGCAGCCTACGGGCAAGTTGGCGCTGCTTACAATCAACATCTAATGGCTCGGCCTCGCATGCCTATTCTACCAAATCCTATGATGCAACAAATGCCGGGAGGTCCACCAATGGCCCCAGGGGGGATTAGGATTCCTGTTTTGCCTAGACCGCCAATGGGTGCTCCAGGGGTATACCAACCAATGATGCAAATGATGGCTCCACCTGGGGCTCCTGGGATGCCTGGTCAAGTAAATATGCCCATGAGGCCTCCAACTTTGAGTGCTCCACCATCAGTTCCTGGCAGCGCACCACCCAATGCTTCTAATGGTGCTCCTTCTGTGGCTGCACCCCCTATGTATCAACCTAATCCAACAGCACCATCAACCGGAGGCTATGATAGTTTCAATTTGAATGCACAGCCTCCTGAATCTAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030627 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

zf-U1

Protein Analysis

201

Amino Acids

21.65

Weight (kDa)

9.1

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	1 - 38	5.7e-22	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03120
fragaria_vesca	FvH4_2g24650
malus_domestica	MD03G1275200.v1.1 MD11G1297300.v1.1
prunus_persica	Prupe.8G251800_v2.0.a1 Prupe.8G251800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0292481
rosa_laevigata	RLG00000012020
rosa_multiflora	Rmu_sc0001354.1_g000026 Rmu_sc0020530.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175020
rosa_rugosa	Rorug06G0227000 Rorug06G0227100
rosa_samantha	Rh6AG340300 Rh6BG347600 Rh6CG354600 Rh6DG340400
rosa_wichuraiana	Rw6G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	3 cut(s)	77, 103, 332
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	2 cut(s)	11, 110
AfiI	CCNNNNNNNGG	3 cut(s)	303, 338, 548
AgsI	TTSAA	2 cut(s)	568, 574
AjnI	CCWGG	6 cut(s)	298, 346, 385, 394, 403, 460
Alw21I	GWGCWC	3 cut(s)	346, 448, 496
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	175, 233, 294, 428
ApeKI	GCWGC	5 cut(s)	67, 185, 206, 465, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspLEI	GCGC	2 cut(s)	206, 470
AspS9I	GGNCC	2 cut(s)	284, 295
AsuC2I	CCSGG	1 cut(s)	279
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	3 cut(s)	346, 448, 496
BbvI	GCAGC	5 cut(s)	79, 193, 197, 477, 493
BccI	CCATC	3 cut(s)	370, 460, 550
BciT130I	CCWGG	6 cut(s)	300, 348, 387, 396, 405, 462
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	2 cut(s)	327, 594
BfoI	RGCGCY	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	6 cut(s)	68, 104, 186, 207, 466, 507
BlsI	GCNGC	6 cut(s)	69, 105, 187, 208, 467, 508
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	7 cut(s)	279, 300, 348, 387, 396, 405, 462
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	284, 295
BmiI	GGNNCC	3 cut(s)	297, 381, 393
BmrFI	CCNGG	7 cut(s)	279, 300, 348, 387, 396, 405, 462
BmsI	GCATC	3 cut(s)	255, 357, 390
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	33
BsaJI	CCNNGG	6 cut(s)	5, 298, 299, 347, 386, 395
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 338, 548
BseBI	CCWGG	6 cut(s)	300, 348, 387, 396, 405, 462
BseDI	CCNNGG	6 cut(s)	5, 298, 299, 347, 386, 395
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	303, 338, 548
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	5 cut(s)	79, 193, 197, 477, 493
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	4 cut(s)	177, 235, 296, 430
BsiHKAI	GWGCWC	3 cut(s)	346, 448, 496
BsiSI	CCGG	2 cut(s)	278, 549
BslI	CCNNNNNNNGG	3 cut(s)	303, 338, 548
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	4 cut(s)	177, 235, 296, 430
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	4 cut(s)	346, 394, 448, 496
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	77, 103, 332
BspANI	GGCC	4 cut(s)	177, 235, 296, 430
BspLI	GGNNCC	3 cut(s)	297, 381, 393
BspT104I	TTCGAA	1 cut(s)	61
BssECI	CCNNGG	6 cut(s)	5, 298, 299, 347, 386, 395
BssMI	GATC	1 cut(s)	159
BssNAI	GTATAC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	355
Bst2UI	CCWGG	6 cut(s)	300, 348, 387, 396, 405, 462
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 470
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 241, 274, 331, 427
BstNI	CCWGG	6 cut(s)	300, 348, 387, 396, 405, 462
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	7 cut(s)	277, 298, 346, 385, 394, 403, 460
BstSNI	TACGTA	1 cut(s)	33
BstV1I	GCAGC	5 cut(s)	79, 193, 197, 477, 493
BstZ17I	GTATAC	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	177, 235, 296, 430
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	2 cut(s)	206, 470
Cfr13I	GGNCC	2 cut(s)	284, 295
Csp6I	GTAC	2 cut(s)	10, 109
CviAII	CATG	2 cut(s)	241, 424
CviQI	GTAC	2 cut(s)	10, 109
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	284
EcoRII	CCWGG	6 cut(s)	298, 346, 385, 394, 403, 460
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	2 cut(s)	244, 427
FaiI	YATR	7 cut(s)	242, 263, 355, 419, 425, 518, 558
FatI	CATG	2 cut(s)	240, 423
FauI	CCCGC	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	6 cut(s)	68, 104, 186, 207, 466, 507
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	6 cut(s)	68, 104, 186, 207, 466, 507
FspBI	CTAG	2 cut(s)	327, 594
GlaI	GCGC	2 cut(s)	205, 469
GluI	GCNGC	6 cut(s)	68, 104, 186, 207, 466, 507
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	177, 235, 296, 430
HapII	CCGG	2 cut(s)	278, 549
HhaI	GCGC	2 cut(s)	206, 470
Hin1II	CATG	2 cut(s)	244, 427
Hin6I	GCGC	2 cut(s)	204, 468
HinP1I	GCGC	2 cut(s)	204, 468
HinfI	GANTC	5 cut(s)	40, 47, 136, 313, 590
HpaII	CCGG	2 cut(s)	278, 549
Hpy166II	GTNNAC	2 cut(s)	287, 355
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	44, 587
Hpy8I	GTNNAC	2 cut(s)	287, 355
HpyAV	CCTTC	2 cut(s)	63, 507
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	185, 268, 370, 509, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 241, 274, 331, 427
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	244, 427
HspAI	GCGC	2 cut(s)	204, 468
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	6 cut(s)	127, 349, 385, 397, 451, 499
Lsp1109I	GCAGC	5 cut(s)	79, 193, 197, 477, 493
LweI	GCATC	3 cut(s)	255, 357, 390
MaeI	CTAG	2 cut(s)	327, 594
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	4 cut(s)	346, 394, 448, 496
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	2 cut(s)	119, 568
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	458, 557
MnlI	CCTC	8 cut(s)	15, 118, 246, 275, 420, 441, 545, 594
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	2 cut(s)	278, 549
MspR9I	CCNGG	7 cut(s)	279, 300, 348, 387, 396, 405, 462
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	6 cut(s)	300, 348, 387, 396, 405, 462
MwoI	GCNNNNNNNGC	5 cut(s)	24, 241, 274, 331, 427
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	244, 427
NlaIV	GGNNCC	3 cut(s)	297, 381, 393
NmeAIII	GCCGAG	1 cut(s)	211
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	244
PasI	CCCWGGG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	4 cut(s)	47, 136, 313, 590
PkrI	GCNGC	6 cut(s)	69, 105, 187, 208, 467, 508
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	33
Psp6I	CCWGG	6 cut(s)	298, 346, 385, 394, 403, 460
PspGI	CCWGG	6 cut(s)	298, 346, 385, 394, 403, 460
PspN4I	GGNNCC	3 cut(s)	297, 381, 393
PspPI	GGNCC	2 cut(s)	284, 295
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	11, 110
RsaNI	GTAC	2 cut(s)	10, 109
SatI	GCNGC	6 cut(s)	68, 104, 186, 207, 466, 507
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	284, 295
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	7 cut(s)	279, 300, 348, 387, 396, 405, 462
SduI	GDGCHC	4 cut(s)	346, 394, 448, 496
SetI	ASST	4 cut(s)	35, 286, 388, 529
SfaNI	GCATC	3 cut(s)	255, 357, 390
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	33
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	119, 568
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	3 cut(s)	77, 103, 332
SspMI	CTAG	2 cut(s)	327, 594
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	7 cut(s)	277, 298, 346, 385, 394, 403, 460
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	119, 568
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	47, 136, 313, 590
TseI	GCWGC	5 cut(s)	67, 185, 206, 465, 506
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	327, 594
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.