AT4G04320

malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005142
Physical Location & Seq
Forward (+)
2113341 .. 2116693
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04320.1

Sequence Viewer

Length: 1557 bp
ATGAGCAAGAAAAATCTAGCGATTCTGTTGCGTGCTAGAATGAGATCCAACAATCCCTCCAAATTTTCCCTCTCTCAATTTCCTAAGGAAATTCAATCTAATCCTCAAGAGAATCATTCTAGAGATCACATTGTGCAAAATTCTAATGATTTTGGTACCACTGGAAGGGTTTATGATGTTGTTCGAGAGACAATGCACTCAGCTATCTCAGCTAGTAAAACTGGTGTATTAGACATTACTCTTAATGATTTTCAAGAGGGTTACTTTAGCCTTTCGCTTGAAGACCGCGAGAAGTTACTGCTTGTTTTAGCCAAGGAGTATGATGTTAACCGAGAGCAAGTCCGAGAACTTGTTAAGCAATATCTTGGACTTGAAACTCCAGCTAGTGATGATGATAAGGGGGCTTTATCTTCTGTTTTCTATCGCATTGAGAGGAATCTGAGGCATGCTCTTAGGCCAACATATGAAGTTTTATTTGAGAGGTTGAATACACATCCTGGAGGGTTGAGATTTTTGTCCATCCTCCGAGCTGATCTTCTGTCGATACTCTCAAAAGAGAACACGCCGTCTTTGCGAACATTAGATTCTTTTCTGAAGGAGAAACTCGGTATGTGGCTTAGTCCTGCCACTTTAGAGCTTCATCAAATTACTTGGGATGATCCTGCTTCATTGCTTGAGAAAATTGTTGCATATGAGGCGGTGCATCCAATCAGCAACCTCTTGGATCTTAAAAGAAGATTGGGAATAGGCCGTCGATGCTTTGGATATTTTCATCCATCTGTTCCTGGTGAGCCACTTATTTTTATAGAAGTTGCTCTTATGGAGACTGTTGCTCAGACAATTCAGGAAGTTTTGTGGGACAATCCTCCCATACCAGAGAACCAAGCAACATGCGCTTTATTTTACTCTATTTCTTCAACTCAGCCTGGCTTAGCTGGGATAAACCTCGGAAAATTTCTGATCAAACGAGTGATTACGTTGGTGAAAAAAGACATGCCACATGTTTCTACATTTGCAACACTTAGCCCCATTCCTGGATTCATGCAATGGCTCCTCTCGAAGTTATCATCTCAGTCAAGATTTGCTGAAGATGAGCGTGGTACACAGAGCAATTCGCCTTCATCTACGTTTAGTGAGAAAGTATTACTACCAGAAGAGGAACATGCCCTCATGACTCTATCAGATGAATCTTCATCCGGTAGCAACGGTATGGAAGTTCTGTTGAATTTGCTATCAGTAAAGAACTGCGATTGGGCTACTTCGCCTCGCCTATTACCAGTTTTAGAACCTATTCTTATGCGGTTATGTGCTAGGTACCTCTTGCAAGAGAAGAAGAGAGGAAAAGCTTTAGACTCTGTTGCTAACTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGATGGCGGATCGATCAGAGAAAGGTATTCGTCAAAGTGGAGGCATTATGGTAAACTATGTCTATAGGTTAGAGAATATCGAAGACTATGCTCAATCGTATTTTGGGTCGGGCAAAATCCATGCCTCTCCCGGTATCCATTCCCGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

518

Amino Acids

58.45

Weight (kDa)

6.91

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCD_N PF17408 107 - 205 2.3e-11 Malonyl-CoA decarboxylase N-terminal domain
MCD PF05292 210 - 490 2.2e-91 Malonyl-CoA decarboxylase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 155, 1314
AccB1I GGYRCC 2 cut(s) 155, 1314
AccII CGCG 1 cut(s) 288
AciI CCGC 4 cut(s) 286, 698, 1300, 1412
AclWI GGATC 4 cut(s) 39, 653, 732, 1422
AcsI RAATTY 5 cut(s) 62, 90, 139, 953, 1225
AcuI CTGAAG 2 cut(s) 614, 1107
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 3 cut(s) 157, 1102, 1316
AfiI CCNNNNNNNGG 2 cut(s) 165, 1034
AflIII ACRYGT 1 cut(s) 1000
AgsI TTSAA 8 cut(s) 95, 254, 281, 374, 487, 918, 1225, 1394
AjnI CCWGG 4 cut(s) 496, 784, 925, 1033
AluBI AGCT 7 cut(s) 203, 212, 383, 530, 637, 935, 1346
AluI AGCT 7 cut(s) 203, 212, 383, 530, 637, 935, 1346
Alw26I GTCTC 2 cut(s) 182, 818
AlwI GGATC 4 cut(s) 39, 653, 732, 1422
AoxI GGCC 2 cut(s) 455, 748
ApoI RAATTY 5 cut(s) 62, 90, 139, 953, 1225
Asp700I GAANNNNTTC 1 cut(s) 1290
Asp718I GGTACC 2 cut(s) 155, 1314
AspLEI GCGC 1 cut(s) 896
AsuC2I CCSGG 1 cut(s) 1536
AsuHPI GGTGA 2 cut(s) 800, 994
AxyI CCTNAGG 1 cut(s) 84
BanI GGYRCC 2 cut(s) 155, 1314
BbsI GAAGAC 2 cut(s) 288, 1494
BccI CCATC 4 cut(s) 527, 784, 1381, 1402
BceAI ACGGC 2 cut(s) 550, 735
BcgI CGANNNNNNTGC 4 cut(s) 10, 44, 1475, 1509
BciT130I CCWGG 4 cut(s) 498, 786, 927, 1035
BciVI GTATCC 1 cut(s) 1550
BclI TGATCA 1 cut(s) 960
BcnI CCSGG 1 cut(s) 1536
BcoDI GTCTC 2 cut(s) 182, 818
BfaI CTAG 7 cut(s) 17, 36, 120, 213, 384, 1311, 1555
BfmI CTRYAG 1 cut(s) 1468
BfuI GTATCC 1 cut(s) 1550
BlpI GCTNAGC 1 cut(s) 931
Bme1390I CCNGG 5 cut(s) 498, 786, 927, 1035, 1536
BmiI GGNNCC 3 cut(s) 157, 1052, 1316
BmrFI CCNGG 5 cut(s) 498, 786, 927, 1035, 1536
BmsI GCATC 2 cut(s) 712, 746
BpiI GAAGAC 2 cut(s) 288, 1494
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 2 cut(s) 363, 519
Bpu1102I GCTNAGC 1 cut(s) 931
BpuEI CTTGAG 2 cut(s) 90, 695
BpuMI CCSGG 1 cut(s) 1536
Bsa29I ATCGAT 1 cut(s) 1417
BsaJI CCNNGG 2 cut(s) 312, 946
BsaWI WCCGGW 1 cut(s) 1196
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 1374, 1404
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 1034
Bse1I ACTGG 3 cut(s) 166, 226, 1277
Bse21I CCTNAGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 668, 1052
BseBI CCWGG 4 cut(s) 498, 786, 927, 1035
BseCI ATCGAT 1 cut(s) 1417
BseDI CCNNGG 2 cut(s) 312, 946
BseGI GGATG 7 cut(s) 493, 519, 661, 703, 772, 1193, 1413
BseLI CCNNNNNNNGG 2 cut(s) 165, 1034
BseMI GCAATG 2 cut(s) 668, 1052
BseMII CTCAG 6 cut(s) 213, 222, 431, 848, 935, 1085
BseNI ACTGG 3 cut(s) 166, 226, 1277
BseRI GAGGAG 1 cut(s) 1043
BseYI CCCAGC 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 457, 750
BshNI GGYRCC 2 cut(s) 155, 1314
BshVI ATCGAT 1 cut(s) 1417
BsiSI CCGG 2 cut(s) 1197, 1536
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 2 cut(s) 165, 1034
BsmAI GTCTC 2 cut(s) 182, 818
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 2 cut(s) 457, 750
Bsp143I GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
Bsp1720I GCTNAGC 1 cut(s) 931
BspACI CCGC 4 cut(s) 286, 698, 1300, 1412
BspANI GGCC 2 cut(s) 457, 750
BspCNI CTCAG 6 cut(s) 212, 221, 432, 847, 934, 1084
BspDI ATCGAT 1 cut(s) 1417
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 3 cut(s) 157, 1052, 1316
BspPI GGATC 4 cut(s) 39, 653, 732, 1422
BspT107I GGYRCC 2 cut(s) 155, 1314
BsrDI GCAATG 2 cut(s) 668, 1052
BsrI ACTGG 3 cut(s) 166, 226, 1277
BssECI CCNNGG 2 cut(s) 312, 946
BssMI GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 4 cut(s) 498, 786, 927, 1035
Bst4CI ACNGT 2 cut(s) 829, 1208
Bst6I CTCTTC 2 cut(s) 1149, 1328
BstC8I GCNNGC 2 cut(s) 33, 447
BstF5I GGATG 7 cut(s) 493, 519, 661, 703, 772, 1193, 1413
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 8 cut(s) 47, 127, 535, 661, 727, 963, 1417, 1421
BstMAI GTCTC 2 cut(s) 182, 818
BstMBI GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
BstMWI GCNNNNNNNGC 5 cut(s) 209, 571, 695, 756, 893
BstNI CCWGG 4 cut(s) 498, 786, 927, 1035
BstNSI RCATGY 5 cut(s) 449, 894, 997, 1004, 1166
BstSCI CCNGG 5 cut(s) 496, 784, 925, 1033, 1534
BstSFI CTRYAG 1 cut(s) 1468
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 2 cut(s) 288, 1494
BstX2I RGATCY 2 cut(s) 44, 724
BstYI RGATCY 2 cut(s) 44, 724
Bsu15I ATCGAT 1 cut(s) 1417
Bsu36I CCTNAGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 1550
BsuRI GGCC 2 cut(s) 457, 750
BsuTUI ATCGAT 1 cut(s) 1417
BtgZI GCGATG 1 cut(s) 1400
BtsCI GGATG 7 cut(s) 493, 519, 661, 703, 772, 1193, 1413
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 33, 447
CciI TCATGA 1 cut(s) 1170
CfoI GCGC 1 cut(s) 896
ClaI ATCGAT 1 cut(s) 1417
Csp6I GTAC 3 cut(s) 156, 1101, 1315
CviAII CATG 8 cut(s) 446, 891, 994, 1001, 1042, 1163, 1171, 1526
CviQI GTAC 3 cut(s) 156, 1101, 1315
DpnI GATC 8 cut(s) 46, 126, 534, 660, 726, 962, 1416, 1420
DpnII GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
DraIII CACNNNGTG 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 1149, 1328
EarI CTCTTC 2 cut(s) 1149, 1328
EciI GGCGGA 1 cut(s) 1427
Eco130I CCWWGG 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 614, 1107
Eco81I CCTNAGG 1 cut(s) 84
EcoRII CCWGG 4 cut(s) 496, 784, 925, 1033
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 8 cut(s) 449, 894, 997, 1004, 1045, 1166, 1174, 1529
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 872
FatI CATG 8 cut(s) 445, 890, 993, 1000, 1041, 1162, 1170, 1525
FauNDI CATATG 2 cut(s) 463, 691
FbaI TGATCA 1 cut(s) 960
FokI GGATG 7 cut(s) 480, 506, 668, 690, 759, 1180, 1420
FspBI CTAG 7 cut(s) 17, 36, 120, 213, 384, 1311, 1555
GlaI GCGC 1 cut(s) 895
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 2 cut(s) 363, 519
HaeIII GGCC 2 cut(s) 457, 750
HapII CCGG 2 cut(s) 1197, 1536
HhaI GCGC 1 cut(s) 896
Hin1II CATG 8 cut(s) 449, 894, 997, 1004, 1045, 1166, 1174, 1529
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 1344
HinfI GANTC 8 cut(s) 22, 112, 436, 584, 1038, 1174, 1187, 1352
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 2 cut(s) 1197, 1536
HphI GGTGA 2 cut(s) 800, 994
Hpy166II GTNNAC 3 cut(s) 328, 1103, 1459
Hpy188I TCNGA 9 cut(s) 344, 441, 527, 594, 837, 950, 960, 1183, 1423
Hpy188III TCNNGA 8 cut(s) 107, 120, 185, 254, 845, 1057, 1077, 1171
Hpy8I GTNNAC 3 cut(s) 328, 1103, 1459
Hpy99I CGWCG 1 cut(s) 756
HpyAV CCTTC 3 cut(s) 159, 589, 1128
HpyCH4III ACNGT 2 cut(s) 829, 1208
HpyCH4IV ACGT 2 cut(s) 977, 1127
HpyCH4V TGCA 8 cut(s) 136, 196, 689, 703, 1016, 1045, 1324, 1375
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 571, 695, 756, 893
HpySE526I ACGT 2 cut(s) 977, 1127
Hsp92II CATG 8 cut(s) 449, 894, 997, 1004, 1045, 1166, 1174, 1529
HspAI GCGC 1 cut(s) 894
KpnI GGTACC 2 cut(s) 159, 1318
Ksp22I TGATCA 1 cut(s) 960
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
LmnI GCTCC 2 cut(s) 1056, 1382
LweI GCATC 2 cut(s) 712, 746
MaeI CTAG 7 cut(s) 17, 36, 120, 213, 384, 1311, 1555
MaeII ACGT 2 cut(s) 977, 1127
MaeIII GTNAC 2 cut(s) 260, 294
MalI GATC 8 cut(s) 46, 126, 534, 660, 726, 962, 1416, 1420
MboI GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
MflI RGATCY 2 cut(s) 44, 724
MlyI GAGTC 2 cut(s) 1168, 1346
MmeI TCCRAC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 1290
MseI TTAA 4 cut(s) 243, 327, 354, 729
MspI CCGG 2 cut(s) 1197, 1536
MspR9I CCNGG 5 cut(s) 498, 786, 927, 1035, 1536
MvaI CCWGG 4 cut(s) 498, 786, 927, 1035
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 5 cut(s) 209, 571, 695, 756, 893
NciI CCSGG 1 cut(s) 1536
NdeI CATATG 2 cut(s) 463, 691
NdeII GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
NlaIII CATG 8 cut(s) 449, 894, 997, 1004, 1045, 1166, 1174, 1529
NlaIV GGNNCC 3 cut(s) 157, 1052, 1316
NspI RCATGY 5 cut(s) 449, 894, 997, 1004, 1166
PaeI GCATGC 1 cut(s) 449
PagI TCATGA 1 cut(s) 1170
PciI ACATGT 1 cut(s) 1000
PdmI GAANNNNTTC 1 cut(s) 1290
PfeI GAWTC 6 cut(s) 22, 112, 436, 584, 1038, 1187
PfoI TCCNGGA 2 cut(s) 496, 1033
PleI GAGTC 2 cut(s) 1168, 1346
PpsI GAGTC 2 cut(s) 1168, 1346
PscI ACATGT 1 cut(s) 1000
Psp6I CCWGG 4 cut(s) 496, 784, 925, 1033
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 4 cut(s) 496, 784, 925, 1033
PspN4I GGNNCC 3 cut(s) 157, 1052, 1316
PsuI RGATCY 2 cut(s) 44, 724
RsaI GTAC 3 cut(s) 157, 1102, 1316
RsaNI GTAC 3 cut(s) 156, 1101, 1315
SaqAI TTAA 4 cut(s) 243, 327, 354, 729
Sau3AI GATC 8 cut(s) 44, 124, 532, 658, 724, 960, 1414, 1418
SchI GAGTC 2 cut(s) 1168, 1346
ScrFI CCNGG 5 cut(s) 498, 786, 927, 1035, 1536
SfaNI GCATC 2 cut(s) 712, 746
SfcI CTRYAG 1 cut(s) 1468
SmlI CTYRAG 2 cut(s) 105, 674
SmoI CTYRAG 2 cut(s) 105, 674
SphI GCATGC 1 cut(s) 449
SsiI CCGC 4 cut(s) 286, 698, 1300, 1412
SspMI CTAG 7 cut(s) 17, 36, 120, 213, 384, 1311, 1555
StyD4I CCNGG 5 cut(s) 496, 784, 925, 1033, 1534
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 829, 1208
TaiI ACGT 2 cut(s) 980, 1130
TaqI TCGA 6 cut(s) 184, 542, 754, 1058, 1417, 1485
TfiI GAWTC 6 cut(s) 22, 112, 436, 584, 1038, 1187
Tru1I TTAA 4 cut(s) 243, 327, 354, 729
Tru9I TTAA 4 cut(s) 243, 327, 354, 729
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 8 cut(s) 480, 629, 657, 761, 1030, 1110, 1182, 1200
TspRI CASTG 1 cut(s) 166
XapI RAATTY 5 cut(s) 62, 90, 139, 953, 1225
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 5 cut(s) 449, 894, 997, 1004, 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 1376
XmnI GAANNNNTTC 1 cut(s) 1290
XspI CTAG 7 cut(s) 17, 36, 120, 213, 384, 1311, 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.