Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003879.1

Orthogroup ID

OG0005142

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1863

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgaacaagaaaggtttggcaattctaatgcgaaccagaatgagacccaccaacaacgattcagctcacctcgctcgctctcctctcgccaacgtggttaatcaaacggtgaatggaggccaatcaagtagtggaacccaaaagctcaatgctttaagcaacaccaagagggattttgaggttgtaagtgagtccatgcactctgcaatttcaatgagtaaaactgaagtcttggattctgtgctgagtgatttctcagagggatatttcagcctttcgtatgagaatcgtcaaaaattgcttgtgcaacttgccaaagagtgtgatgttaataggacacaagttcgcgatttgataaagcagtatttgggacttgagcctcctggaactggaagtgacagtgctcactcagttggcgttgaagaggaggcatctctttctgcattctaccgcattgagaggaacctgagacatgctctcaagccgatgtatgaagtgctatttgagcggcttaatacgcatcccggagggttgaagttcttgtccattcttcgagctgatattttatcaattctcgcagaagaaaatcttgcgtctttgcgagctctggattcctatttaaaggagaaacttagtatgtggcttagtcctgctgccttagagctccaccagatcacatggaatgatcctgcctctttgctggaaaaaattgtggcttatgaggccgtgcacccaatcagcaatcttatagatcttaagagaaggttgggagttggtcgccggtgttttggatactttcatccagcaatacctggtgaaccccttattttcatagaagtcgctctcatgaaagatatggctcaatctgtacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152

Pfam Domains

Protein Families

MCD MCD_N

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

7.11

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04320 AT4G04320
fragaria_vesca	FvH4_3g01470 FvH4_3g01470 FvH4_3g01470 FvH4_3g01470 FvH4_3g01470 FvH4_3g01470
malus_domestica	MD05G1351700.v1.1
prunus_persica	Prupe.4G015900_v2.0.a1 Prupe.4G015900_v2.0.a1 Prupe.I000100_v2.0.a1 Prupe.I000100_v2.0.a1 Prupe.I000100_v2.0.a1 Prupe.I000100_v2.0.a1
pyrus_communis	pycom05g31880
rosa_chinensis	RchiOBHm_Chr3g0487171 RchiOBHm_Chr5g0002321
rosa_laevigata	RLG00000031019
rosa_multiflora	Rmu_sc0003879.1_g000001 Rmu_sc0006137.1_g000008
rosa_roxburghii	Rroxscaffold_1G00073550
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh3AG279900 Rh5AG018000 Rh5BG020600 Rh5BG020700 Rh5CG019900 Rh5DG018700
rosa_wichuraiana	Rw5G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	508
AccII	CGCG	1 cut(s)	348
AciI	CCGC	2 cut(s)	451, 508
AclWI	GGATC	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	3 cut(s)	213, 422, 535
AjnI	CCWGG	2 cut(s)	382, 811
AluBI	AGCT	5 cut(s)	65, 145, 557, 605, 664
AluI	AGCT	5 cut(s)	65, 145, 557, 605, 664
Alw21I	GWGCWC	4 cut(s)	406, 607, 666, 732
Alw26I	GTCTC	2 cut(s)	37, 463
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	2 cut(s)	118, 723
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	59, 121, 827
BaeGI	GKGCMC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	607, 666
Bbv12I	GWGCWC	4 cut(s)	406, 607, 666, 732
BbvI	GCAGC	1 cut(s)	640
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	2 cut(s)	384, 813
BciVI	GTATCC	1 cut(s)	785
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	37, 463
BfrI	CTTAAG	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	785
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	2 cut(s)	509, 654
BlsI	GCNGC	2 cut(s)	510, 655
Bme1390I	CCNGG	3 cut(s)	384, 525, 813
BmiI	GGNNCC	2 cut(s)	136, 464
BmrFI	CCNGG	3 cut(s)	384, 525, 813
BmsI	GCATC	2 cut(s)	440, 529
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
BpuEI	CTTGAG	2 cut(s)	395, 464
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	384, 813
BseGI	GGATG	2 cut(s)	520, 799
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	4 cut(s)	236, 270, 423, 458
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	72, 440
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	120, 725
BsiHKAI	GWGCWC	4 cut(s)	406, 607, 666, 732
BsiSI	CCGG	2 cut(s)	525, 781
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	37, 463
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	120, 725
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	4 cut(s)	406, 607, 666, 732
Bsp1407I	TGTACA	1 cut(s)	868
Bsp143I	GATC	3 cut(s)	672, 685, 751
Bsp68I	TCGCGA	1 cut(s)	348
BspACI	CCGC	2 cut(s)	451, 508
BspANI	GGCC	2 cut(s)	120, 725
BspCNI	CTCAG	4 cut(s)	237, 269, 422, 459
BspFNI	CGCG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	2 cut(s)	136, 464
BspPI	GGATC	1 cut(s)	680
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	780
BssMI	GATC	3 cut(s)	672, 685, 751
Bst2UI	CCWGG	2 cut(s)	384, 813
Bst4CI	ACNGT	2 cut(s)	109, 401
Bst6I	CTCTTC	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	868
BstC8I	GCNNGC	2 cut(s)	76, 603
BstDEI	CTNAG	7 cut(s)	245, 256, 409, 467, 632, 644, 658
BstF5I	GGATG	2 cut(s)	520, 799
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	675, 688, 754
BstMAI	GTCTC	2 cut(s)	37, 463
BstMBI	GATC	3 cut(s)	672, 685, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 505, 517, 722
BstNI	CCWGG	2 cut(s)	384, 813
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	3 cut(s)	382, 523, 811
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	2 cut(s)	120, 725
BtsCI	GGATG	2 cut(s)	520, 799
BtsIMutI	CAGTG	1 cut(s)	406
BtuMI	TCGCGA	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	76, 603
CciI	TCATGA	1 cut(s)	846
Cfr10I	RCCGGY	1 cut(s)	780
CseI	GACGC	1 cut(s)	582
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	4 cut(s)	196, 473, 678, 847
CviQI	GTAC	1 cut(s)	869
DdeI	CTNAG	7 cut(s)	245, 256, 409, 467, 632, 644, 658
DpnI	GATC	3 cut(s)	674, 687, 753
DpnII	GATC	3 cut(s)	672, 685, 751
DraI	TTTAAA	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	2 cut(s)	605, 664
Eco24I	GRGCYC	2 cut(s)	607, 666
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	605, 664
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	2 cut(s)	605, 664
EcoRII	CCWGG	2 cut(s)	382, 811
EcoT38I	GRGCYC	2 cut(s)	607, 666
FaeI	CATG	4 cut(s)	199, 476, 681, 850
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	4 cut(s)	195, 472, 677, 846
Fnu4HI	GCNGC	2 cut(s)	509, 654
FokI	GGATG	2 cut(s)	507, 786
FriOI	GRGCYC	2 cut(s)	607, 666
Fsp4HI	GCNGC	2 cut(s)	509, 654
GluI	GCNGC	2 cut(s)	509, 654
HaeIII	GGCC	2 cut(s)	120, 725
HapII	CCGG	2 cut(s)	525, 781
HgaI	GACGC	1 cut(s)	582
Hin1II	CATG	4 cut(s)	199, 476, 681, 850
HinfI	GANTC	5 cut(s)	59, 191, 236, 286, 611
HpaII	CCGG	2 cut(s)	525, 781
HphI	GGTGA	3 cut(s)	59, 121, 827
Hpy166II	GTNNAC	2 cut(s)	730, 818
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	347, 608, 847
Hpy8I	GTNNAC	2 cut(s)	730, 818
HpyAV	CCTTC	1 cut(s)	756
HpyCH4III	ACNGT	2 cut(s)	109, 401
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	199, 206, 307, 443, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 505, 517, 722
HpyF3I	CTNAG	7 cut(s)	245, 256, 409, 467, 632, 644, 658
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	199, 476, 681, 850
Kzo9I	GATC	3 cut(s)	672, 685, 751
LmnI	GCTCC	1 cut(s)	669
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	2 cut(s)	440, 529
MabI	ACCWGGT	1 cut(s)	811
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	674, 687, 753
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	3 cut(s)	672, 685, 751
MboII	GAAGA	3 cut(s)	434, 542, 593
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	4 cut(s)	406, 607, 666, 732
MluCI	AATT	5 cut(s)	21, 207, 296, 570, 708
MlyI	GAGTC	1 cut(s)	200
MseI	TTAA	6 cut(s)	99, 155, 330, 513, 620, 756
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	2 cut(s)	525, 781
MspR9I	CCNGG	3 cut(s)	384, 525, 813
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	384, 813
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	71, 505, 517, 722
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	672, 685, 751
NlaIII	CATG	4 cut(s)	199, 476, 681, 850
NlaIV	GGNNCC	2 cut(s)	136, 464
NmuCI	GTSAC	1 cut(s)	395
NruI	TCGCGA	1 cut(s)	348
NspI	RCATGY	1 cut(s)	476
PagI	TCATGA	1 cut(s)	846
PctI	GAATGC	1 cut(s)	443
PfeI	GAWTC	4 cut(s)	59, 236, 286, 611
PfoI	TCCNGGA	2 cut(s)	382, 523
PkrI	GCNGC	2 cut(s)	510, 655
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	2 cut(s)	607, 666
Psp6I	CCWGG	2 cut(s)	382, 811
PspGI	CCWGG	2 cut(s)	382, 811
PspN4I	GGNNCC	2 cut(s)	136, 464
PsuI	RGATCY	1 cut(s)	751
RruI	TCGCGA	1 cut(s)	348
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
SacI	GAGCTC	2 cut(s)	607, 666
SaqAI	TTAA	6 cut(s)	99, 155, 330, 513, 620, 756
SatI	GCNGC	2 cut(s)	509, 654
Sau3AI	GATC	3 cut(s)	672, 685, 751
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	384, 525, 813
SduI	GDGCHC	4 cut(s)	406, 607, 666, 732
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	2 cut(s)	440, 529
SgrAI	CRCCGGYG	1 cut(s)	780
SmlI	CTYRAG	3 cut(s)	374, 479, 755
SmoI	CTYRAG	3 cut(s)	374, 479, 755
Sse9I	AATT	5 cut(s)	21, 207, 296, 570, 708
SsiI	CCGC	2 cut(s)	451, 508
SstI	GAGCTC	2 cut(s)	607, 666
StyD4I	CCNGG	3 cut(s)	382, 523, 811
TaaI	ACNGT	2 cut(s)	109, 401
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	553
TasI	AATT	5 cut(s)	21, 207, 296, 570, 708
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	4 cut(s)	59, 236, 286, 611
Tru1I	TTAA	6 cut(s)	99, 155, 330, 513, 620, 756
Tru9I	TTAA	6 cut(s)	99, 155, 330, 513, 620, 756
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	5 cut(s)	17, 507, 788, 820, 863
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	755
VneI	GTGCAC	1 cut(s)	728
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.