RchiOBHm_Chr3g0487171

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005142
Physical Location & Seq
Reverse (-)
34337381 .. 34343035
5655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45160

Sequence Viewer

Length: 492 bp
ATGCAACATATTTCTACATTTGCGACTCTCAGTCCCATTCCAGGGTACATGCAATGGCTCCTATCAAAATTGGCATCCCAGTCAAAACTTGCTAAAGGTGAAGACATGCCAAACTCGTTAGCTGATAGATCTGGTTCCACATTTTGGGAGAACATACTTGAACCAGAAGAGGAAAGAGCACTTATGGATGCTTCTATGGAATTCACCACTGGGAAAAACAACATGGAAGTGATGCTCAATTTACTGACTTCAGCAAACCATGAATGGACAAAGTCTGATATATTGCTTTCAGTTCTAAAACCCCCTCTAATGCGATTGTGTGCCAGGGTACCTTCTGCAAGAGAAAAAGAGAGGCAAAGCTCTGGATTCTGTTGCAAATTTTCACTTACAGAAGGGAGCGATTGGGCAAAATTGAAGATTATTCTCAGTCAAATTTCAGTACAGGGCATATCCATACTTCTACTGAACTTTCCCGATATGTTGAGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

5.92

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCD PF05292 2 - 150 2.7e-09 Malonyl-CoA decarboxylase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 328
AccB7I CCANNNNNTGG 1 cut(s) 144
AcsI RAATTY 3 cut(s) 200, 377, 432
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 3 cut(s) 47, 330, 441
AfiI CCNNNNNNNGG 3 cut(s) 41, 42, 144
AgsI TTSAA 2 cut(s) 161, 415
AhdI GACNNNNNGTC 1 cut(s) 30
AjnI CCWGG 2 cut(s) 40, 323
AluBI AGCT 2 cut(s) 122, 360
AluI AGCT 2 cut(s) 122, 360
Alw21I GWGCWC 1 cut(s) 181
ApoI RAATTY 3 cut(s) 200, 377, 432
Asp718I GGTACC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 110, 196
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 42, 325
BglII AGATCT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 42, 325
BmeRI GACNNNNNGTC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 59, 136, 330
BmrFI CCNGG 2 cut(s) 42, 325
BmrI ACTGGG 2 cut(s) 73, 219
BmsI GCATC 3 cut(s) 83, 178, 222
BmuI ACTGGG 2 cut(s) 73, 219
BpiI GAAGAC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 41, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 42, 144
Bse1I ACTGG 2 cut(s) 79, 214
Bse3DI GCAATG 1 cut(s) 59
BseBI CCWGG 2 cut(s) 42, 325
BseDI CCNNGG 2 cut(s) 41, 324
BseGI GGATG 2 cut(s) 74, 193
BseLI CCNNNNNNNGG 3 cut(s) 41, 42, 144
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 43, 439
BseNI ACTGG 2 cut(s) 79, 214
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 41, 42, 144
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 42, 438
BspLI GGNNCC 3 cut(s) 59, 136, 330
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 59
BsrI ACTGG 2 cut(s) 79, 214
BssECI CCNNGG 2 cut(s) 41, 324
BssMI GATC 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 42, 325
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 29, 425
BstF5I GGATG 2 cut(s) 74, 193
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 42, 325
BstNSI RCATGY 2 cut(s) 52, 109
BstSCI CCNGG 2 cut(s) 40, 323
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtsCI GGATG 2 cut(s) 74, 193
BtsIMutI CAGTG 1 cut(s) 207
Csp6I GTAC 3 cut(s) 46, 329, 440
CviAII CATG 4 cut(s) 49, 106, 223, 260
CviJI RGCY 4 cut(s) 58, 122, 360, 486
CviKI_1 RGCY 4 cut(s) 58, 122, 360, 486
CviQI GTAC 3 cut(s) 46, 329, 440
DdeI CTNAG 2 cut(s) 29, 425
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 40, 323
FaeI CATG 4 cut(s) 52, 109, 226, 263
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 48, 105, 222, 259
FokI GGATG 2 cut(s) 61, 200
Hin1II CATG 4 cut(s) 52, 109, 226, 263
HinfI GANTC 2 cut(s) 25, 366
HphI GGTGA 2 cut(s) 110, 196
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 363, 473
HpyAV CCTTC 2 cut(s) 342, 386
HpyCH4V TGCA 4 cut(s) 4, 52, 338, 375
HpyF3I CTNAG 2 cut(s) 29, 425
Hsp92II CATG 4 cut(s) 52, 109, 226, 263
KpnI GGTACC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 63, 396
LweI GCATC 3 cut(s) 83, 178, 222
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 113, 179, 427
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 6 cut(s) 68, 200, 238, 377, 410, 432
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 3 cut(s) 163, 315, 345
MslI CAYNNNNRTG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 42, 325
MvaI CCWGG 2 cut(s) 42, 325
NdeII GATC 1 cut(s) 128
NlaIII CATG 4 cut(s) 52, 109, 226, 263
NlaIV GGNNCC 3 cut(s) 59, 136, 330
NspI RCATGY 2 cut(s) 52, 109
PfeI GAWTC 1 cut(s) 366
PflFI GACNNNGTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 144
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 40, 323
PspGI CCWGG 2 cut(s) 40, 323
PspN4I GGNNCC 3 cut(s) 59, 136, 330
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 271
RsaI GTAC 3 cut(s) 47, 330, 441
RsaNI GTAC 3 cut(s) 46, 329, 440
RseI CAYNNNNRTG 1 cut(s) 227
Sau3AI GATC 1 cut(s) 128
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 42, 325
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 100, 124, 334, 362
SfaNI GCATC 3 cut(s) 83, 178, 222
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 6 cut(s) 68, 200, 238, 377, 410, 432
StyD4I CCNGG 2 cut(s) 40, 323
TasI AATT 6 cut(s) 68, 200, 238, 377, 410, 432
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 1 cut(s) 366
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 3 cut(s) 200, 377, 432
XceI RCATGY 2 cut(s) 52, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.