Rh5BG020700

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005142
Physical Location & Seq
Forward (+)
1537427 .. 1538715
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG020700.1

Sequence Viewer

Length: 420 bp
ATGGATGCTTCTGTGGAATTCACCACTGGGAAAAACAGCATGGAAGTGATGCTCAATTTACTGACTTCGGCAAATCATGAGTGGACCAAGTCTGATAAATTGCTTTCAGTTCTAAAACCCCCTCTAATGCGATTGTGTGCCAGGTACCTTCTGCAAGAGAAAAAGAGAGGCAAAGCTCTGGATTCTGTTGCAAATTTTCACCTACAGAATGGAGCCATGGTTGAAAGAATTAATTGGATGGCTGATCGATCAGAGAAGGGCCTTCATCAAAGTGGAGGTATCATGGTGAACTATGTTTACAGATTGGGCAAAATTGAAGATTATTCTCAGTCATATTTCAGTACGGGGCATATCCATACTTCTAGTGAACTTTCCCGTTACGTTGAGCCATTTAAGGAACCTCAAAATAGAACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

8.67

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCD PF05292 19 - 100 6.5e-29 Malonyl-CoA decarboxylase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 17, 193
AfaI GTAC 2 cut(s) 146, 343
AgsI TTSAA 2 cut(s) 224, 317
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 259
ApoI RAATTY 2 cut(s) 17, 193
AseI ATTAAT 1 cut(s) 231
Asp718I GGTACC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 84, 259
AsuHPI GGTGA 3 cut(s) 13, 191, 298
AvaII GGWCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 144
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 84, 259
BmiI GGNNCC 3 cut(s) 146, 214, 399
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 10, 243
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 31
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 247
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 244, 248
Bsp19I CCATGG 1 cut(s) 216
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 247
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 146, 214, 399
BspT107I GGYRCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 244, 248
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 10, 243
BstKTI GATC 2 cut(s) 247, 251
BstMBI GATC 2 cut(s) 244, 248
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 10, 243
BtsIMutI CAGTG 1 cut(s) 24
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 84, 259
ClaI ATCGAT 1 cut(s) 247
Csp6I GTAC 2 cut(s) 145, 342
CviAII CATG 4 cut(s) 40, 77, 217, 283
CviJI RGCY 5 cut(s) 176, 215, 242, 261, 388
CviKI_1 RGCY 5 cut(s) 176, 215, 242, 261, 388
CviQI GTAC 2 cut(s) 145, 342
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 246, 250
DpnII GATC 2 cut(s) 244, 248
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 43, 80, 220, 286
FaiI YATR 8 cut(s) 41, 78, 218, 284, 294, 334, 351, 357
FatI CATG 4 cut(s) 39, 76, 216, 282
FokI GGATG 2 cut(s) 17, 250
FspBI CTAG 1 cut(s) 363
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 4 cut(s) 43, 80, 220, 286
HinfI GANTC 1 cut(s) 182
HphI GGTGA 3 cut(s) 13, 191, 298
Hpy166II GTNNAC 4 cut(s) 84, 289, 298, 368
Hpy188I TCNGA 2 cut(s) 94, 253
Hpy188III TCNNGA 2 cut(s) 77, 179
Hpy8I GTNNAC 4 cut(s) 84, 289, 298, 368
HpyAV CCTTC 3 cut(s) 158, 250, 272
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 154, 191
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 4 cut(s) 43, 80, 220, 286
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 244, 248
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 4 cut(s) 12, 127, 154, 164
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 377
MalI GATC 2 cut(s) 246, 250
MboI GATC 2 cut(s) 244, 248
MboII GAAGA 1 cut(s) 329
MluCI AATT 7 cut(s) 17, 55, 98, 193, 228, 232, 312
MnlI CCTC 4 cut(s) 132, 161, 269, 411
MseI TTAA 2 cut(s) 231, 393
MslI CAYNNNNRTG 2 cut(s) 44, 270
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 216
NdeII GATC 2 cut(s) 244, 248
NlaIII CATG 4 cut(s) 43, 80, 220, 286
NlaIV GGNNCC 3 cut(s) 146, 214, 399
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 146, 214, 399
PspPI GGNCC 2 cut(s) 84, 259
PsrI GAACNNNNNNTAC 2 cut(s) 281, 313
PsyI GACNNNGTC 1 cut(s) 88
RsaI GTAC 2 cut(s) 146, 343
RsaNI GTAC 2 cut(s) 145, 342
RseI CAYNNNNRTG 2 cut(s) 44, 270
SaqAI TTAA 2 cut(s) 231, 393
Sau3AI GATC 2 cut(s) 244, 248
Sau96I GGNCC 2 cut(s) 84, 259
ScrFI CCNGG 1 cut(s) 142
SetI ASST 7 cut(s) 146, 150, 178, 204, 280, 384, 403
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 44, 270
Sse9I AATT 7 cut(s) 17, 55, 98, 193, 228, 232, 312
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 247
TasI AATT 7 cut(s) 17, 55, 98, 193, 228, 232, 312
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 231, 393
Tru9I TTAA 2 cut(s) 231, 393
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 84
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 2 cut(s) 17, 193
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.