FvH4_3g01470

Malonyl-CoA decarboxylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
757635 .. 761913
4279 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01470.t1

Sequence Viewer

Length: 1572 bp
ATGAACAAGAAAGGTTTGGCAATTCTAATGCGAACCAGAATGAGACCCACCAACGATTCATCTCACCTCGCTCGCTCTCCTCTCGCCAACATGGTTAATCAAACGGTGAACGGAAGCCAATCAAGTAGCGGAGCCCAAAAGCTCAATGCTTCAAGCAACACCAAGAGGGATTTAGAGGTTGTAAGCGAGTCCATGCACTCTGCAATTTCAATGAGTAAAATAGAAGTCTTGGATTCTGTGCTGAGTGATTTCTCTGAGGGATATTTTAGCCTTTGCTATGAGAATCGTCAAAAATTGCTTGTGCAACTTGCCAAAGAGTATGATCTTAACAGGACACAGGTTCGCGATTTGATAAAGCAGTATTTGGGACTTGAGCTTCCTGGAACTGGAAGTGACAATGCTGACTCAGAAGAGGAGGCATCTCTTTCTGCTTTCTACCGCATTGAGAGGAACTTGAGACATGCTCTCAAGCCCATGTATGAAGTGCTATTTGAGCGGCTTAATACGCATCCCGGAGGGTTGAAGTTCTTGTCTATTCTTCGAGCTGATATCTTATCAATTCTCGCAGAAGATAATCTGGCGTCTTTGCGAGCATTGGATTCCTATTTAAAGGAGAAACTTAGTACGTGGCTTAGTCCCGCTGCCTTAGAGCTCCACCAGATCACATGGGATGATCCTGCCTCTTTGCTGGAAAAAATTGTGGCTTATGAGGCCGTGCACCCAATCAGCAATCTTATAGATCTTAAGAGAAGGTTGGGAGTTGGTCGCCGGTGTTTTGGGTACTTTCATCCAGCAATACCTGGTGAACCCCTTATTTTCATAGAAGCTGCACTCATGAAAGATCTGGCTCAATCTGTACAGGAAGTTCTATGGGATGTCCCTCCTATTCCTGAATGTGAGGCTACATGTGCGTTGTTTTACTCCATATCATCAACTCAGCCTGGCTTATCAGGGATCAACCTGGGAAAGTTTCTAATCAAACGTGTGATAACACTGGTGAGGAAAGACATGCCACATATTTCTACATTTGCAACTCTCAGCCCCATTCCAGGGTACATGCAATGGCTCCTATCAAAATTGGCATCCCAGTCAAAACTTGCTGAAGGTGAAGACATGCCAAACACGTCAGCTGATAGATCTGGTTCCACATTTTGGGAGAACATACTTGAACCAGAAGAGGAAAGAGAACTTACAGATGCTTTTGGGGAATTCACCACTGGGAAAAACAGCATGGAAGTGATGCTCAATTTACTGACTTCAGCAAACCATGAGTGGACAAAGTCTGATAAATTGCTTTCAGTTCTAAAACCCCCTCTAATGCGATTGTGTGCCAGGTACCTTCTGCAAGAGAAAAAGAGAGGCAAAGCTCTGGATTTTGTTGCAAATTTTCACTTACAGAATGGAGCAATGGTTGAGAGAATTAATTGGATGGCTGATCGATCAGATAAAGGCCTTCATCAAAGTGGTGGTATCATGGTGAACTATGTTTACAGATTGGGCAACATTGAAGATTATTCTCAGTCATATTTCAGTACAGGGCATATCCATACTTCTAATGAACTTTCCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

524

Amino Acids

58.77

Weight (kDa)

6.16

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCD_N PF17408 147 - 210 3.7e-11 Malonyl-CoA decarboxylase N-terminal domain
MCD PF05292 215 - 497 5.7e-91 Malonyl-CoA decarboxylase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1335
AccB1I GGYRCC 1 cut(s) 1335
AccB7I CCANNNNNTGG 1 cut(s) 1152
AccBSI CCGCTC 1 cut(s) 496
AccII CGCG 1 cut(s) 345
AciI CCGC 4 cut(s) 129, 439, 496, 639
AclWI GGATC 2 cut(s) 668, 962
AcsI RAATTY 2 cut(s) 1208, 1384
AcuI CTGAAG 2 cut(s) 1122, 1242
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 6 cut(s) 625, 782, 858, 1055, 1337, 1534
AfiI CCNNNNNNNGG 4 cut(s) 386, 1049, 1050, 1152
AflII CTTAAG 1 cut(s) 743
AflIII ACRYGT 3 cut(s) 905, 982, 1122
AgsI TTSAA 5 cut(s) 153, 210, 523, 1169, 1508
AjiI CACGTC 1 cut(s) 1125
AjnI CCWGG 6 cut(s) 379, 799, 940, 960, 1048, 1331
AluBI AGCT 7 cut(s) 142, 376, 545, 652, 827, 1130, 1367
AluI AGCT 7 cut(s) 142, 376, 545, 652, 827, 1130, 1367
Alw21I GWGCWC 2 cut(s) 654, 720
Alw26I GTCTC 2 cut(s) 37, 451
Alw44I GTGCAC 1 cut(s) 716
AlwI GGATC 2 cut(s) 668, 962
AoxI GGCC 2 cut(s) 711, 1450
ApaLI GTGCAC 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 641, 827
ApoI RAATTY 2 cut(s) 1208, 1384
AseI ATTAAT 1 cut(s) 1422
Asp718I GGTACC 1 cut(s) 1335
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 7 cut(s) 56, 118, 815, 1009, 1118, 1204, 1489
BaeGI GKGCMC 1 cut(s) 720
BanI GGYRCC 1 cut(s) 1335
BanII GRGCYC 2 cut(s) 136, 654
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 2 cut(s) 654, 720
BbvI GCAGC 2 cut(s) 628, 814
BccI CCATC 1 cut(s) 1423
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 6 cut(s) 381, 801, 942, 962, 1050, 1333
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 37, 451
BfrI CTTAAG 1 cut(s) 743
BglII AGATCT 3 cut(s) 739, 841, 1136
BisI GCNGC 3 cut(s) 497, 642, 828
BlsI GCNGC 3 cut(s) 498, 643, 829
Bme1390I CCNGG 7 cut(s) 381, 513, 801, 942, 962, 1050, 1333
BmgBI CACGTC 1 cut(s) 1125
BmiI GGNNCC 4 cut(s) 133, 1067, 1144, 1337
BmrFI CCNGG 7 cut(s) 381, 513, 801, 942, 962, 1050, 1333
BmrI ACTGGG 2 cut(s) 1081, 1227
BmsI GCATC 5 cut(s) 428, 517, 1091, 1186, 1230
BmuI ACTGGG 2 cut(s) 1081, 1227
BpiI GAAGAC 1 cut(s) 1116
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpuEI CTTGAG 3 cut(s) 392, 452, 475
BpuMI CCSGG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 1438
BsaAI YACGTR 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 961, 1049
BsaXI ACNNNNNCTCC 2 cut(s) 1395, 1425
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 1049, 1050, 1152
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 4 cut(s) 391, 999, 1087, 1222
Bse3DI GCAATG 2 cut(s) 1067, 1413
BseBI CCWGG 6 cut(s) 381, 801, 942, 962, 1050, 1333
BseCI ATCGAT 1 cut(s) 1438
BseDI CCNNGG 2 cut(s) 961, 1049
BseGI GGATG 6 cut(s) 508, 676, 787, 880, 1082, 1434
BseLI CCNNNNNNNGG 4 cut(s) 386, 1049, 1050, 1152
BseMI GCAATG 2 cut(s) 1067, 1413
BseMII CTCAG 6 cut(s) 233, 246, 420, 950, 1051, 1532
BseNI ACTGG 4 cut(s) 391, 999, 1087, 1222
BseRI GAGGAG 2 cut(s) 69, 428
BseSI GKGCMC 1 cut(s) 720
BseXI GCAGC 2 cut(s) 628, 814
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 713, 1452
BshNI GGYRCC 1 cut(s) 1335
BshVI ATCGAT 1 cut(s) 1438
BsiHKAI GWGCWC 2 cut(s) 654, 720
BsiSI CCGG 2 cut(s) 513, 769
BslFI GGGAC 3 cut(s) 381, 621, 863
BslI CCNNNNNNNGG 4 cut(s) 386, 1049, 1050, 1152
BsmAI GTCTC 2 cut(s) 37, 451
BsmFI GGGAC 3 cut(s) 381, 621, 863
BsnI GGCC 2 cut(s) 713, 1452
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 3 cut(s) 136, 654, 720
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
Bsp68I TCGCGA 1 cut(s) 345
BspACI CCGC 4 cut(s) 129, 439, 496, 639
BspANI GGCC 2 cut(s) 713, 1452
BspCNI CTCAG 6 cut(s) 234, 247, 419, 949, 1050, 1531
BspDI ATCGAT 1 cut(s) 1438
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 4 cut(s) 133, 1067, 1144, 1337
BspPI GGATC 2 cut(s) 668, 962
BspT107I GGYRCC 1 cut(s) 1335
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 1067, 1413
BsrFI RCCGGY 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 4 cut(s) 391, 999, 1087, 1222
BssAI RCCGGY 1 cut(s) 768
BssECI CCNNGG 2 cut(s) 961, 1049
BssMI GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 6 cut(s) 381, 801, 942, 962, 1050, 1333
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 405, 1170
BstACI GRCGYC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 743
BstAUI TGTACA 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 73, 591
BstDEI CTNAG 9 cut(s) 242, 255, 406, 620, 632, 646, 936, 1037, 1518
BstF5I GGATG 6 cut(s) 508, 676, 787, 880, 1082, 1434
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 9 cut(s) 325, 663, 676, 742, 844, 957, 1139, 1438, 1442
BstMAI GTCTC 2 cut(s) 37, 451
BstMBI GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
BstMWI GCNNNNNNNGC 4 cut(s) 493, 505, 710, 908
BstNI CCWGG 6 cut(s) 381, 801, 942, 962, 1050, 1333
BstNSI RCATGY 5 cut(s) 464, 909, 1012, 1060, 1117
BstSCI CCNGG 7 cut(s) 379, 511, 799, 940, 960, 1048, 1331
BstSLI GKGCMC 1 cut(s) 720
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 628, 814
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 3 cut(s) 739, 841, 1136
BstYI RGATCY 3 cut(s) 739, 841, 1136
Bsu15I ATCGAT 1 cut(s) 1438
BsuRI GGCC 2 cut(s) 713, 1452
BsuTUI ATCGAT 1 cut(s) 1438
BtrI CACGTC 1 cut(s) 1125
BtsCI GGATG 6 cut(s) 508, 676, 787, 880, 1082, 1434
BtsIMutI CAGTG 2 cut(s) 992, 1215
BtuMI TCGCGA 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 73, 591
CciI TCATGA 1 cut(s) 834
Cfr10I RCCGGY 1 cut(s) 768
ClaI ATCGAT 1 cut(s) 1438
CseI GACGC 1 cut(s) 570
CsiI ACCWGGT 1 cut(s) 799
Csp6I GTAC 6 cut(s) 624, 781, 857, 1054, 1336, 1533
CviQI GTAC 6 cut(s) 624, 781, 857, 1054, 1336, 1533
DdeI CTNAG 9 cut(s) 242, 255, 406, 620, 632, 646, 936, 1037, 1518
DpnI GATC 9 cut(s) 324, 662, 675, 741, 843, 956, 1138, 1437, 1441
DpnII GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
DraI TTTAAA 1 cut(s) 609
Eam1104I CTCTTC 2 cut(s) 405, 1170
EarI CTCTTC 2 cut(s) 405, 1170
Ecl136II GAGCTC 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 1452
Eco24I GRGCYC 2 cut(s) 136, 654
Eco31I GGTCTC 1 cut(s) 37
Eco32I GATATC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 1122, 1242
EcoICRI GAGCTC 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 1208
EcoRII CCWGG 6 cut(s) 379, 799, 940, 960, 1048, 1331
EcoRV GATATC 1 cut(s) 550
EcoT38I GRGCYC 2 cut(s) 136, 654
FaqI GGGAC 3 cut(s) 381, 621, 863
FauI CCCGC 1 cut(s) 646
Fnu4HI GCNGC 3 cut(s) 497, 642, 828
FokI GGATG 6 cut(s) 495, 683, 774, 887, 1069, 1441
FriOI GRGCYC 2 cut(s) 136, 654
Fsp4HI GCNGC 3 cut(s) 497, 642, 828
GluI GCNGC 3 cut(s) 497, 642, 828
HaeIII GGCC 2 cut(s) 713, 1452
HapII CCGG 2 cut(s) 513, 769
HgaI GACGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 581
HinfI GANTC 6 cut(s) 56, 188, 233, 283, 404, 599
HpaII CCGG 2 cut(s) 513, 769
HphI GGTGA 7 cut(s) 56, 118, 815, 1009, 1118, 1204, 1489
Hpy166II GTNNAC 6 cut(s) 109, 718, 806, 1275, 1480, 1489
Hpy188I TCNGA 4 cut(s) 256, 409, 1285, 1444
Hpy188III TCNNGA 4 cut(s) 344, 835, 890, 1370
Hpy8I GTNNAC 6 cut(s) 109, 718, 806, 1275, 1480, 1489
HpyAV CCTTC 4 cut(s) 744, 1097, 1349, 1463
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 3 cut(s) 626, 982, 1124
HpyCH4V TGCA 9 cut(s) 196, 203, 304, 718, 830, 1031, 1060, 1345, 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 493, 505, 710, 908
HpyF3I CTNAG 9 cut(s) 242, 255, 406, 620, 632, 646, 936, 1037, 1518
HpySE526I ACGT 3 cut(s) 626, 982, 1124
Hsp92I GRCGYC 1 cut(s) 581
KpnI GGTACC 1 cut(s) 1339
Kzo9I GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
LmnI GCTCC 4 cut(s) 131, 657, 1071, 1403
Lsp1109I GCAGC 2 cut(s) 628, 814
LweI GCATC 5 cut(s) 428, 517, 1091, 1186, 1230
MabI ACCWGGT 1 cut(s) 799
MaeII ACGT 3 cut(s) 626, 982, 1124
MaeIII GTNAC 1 cut(s) 392
MalI GATC 9 cut(s) 324, 662, 675, 741, 843, 956, 1138, 1437, 1441
MbiI CCGCTC 1 cut(s) 496
MboI GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
MboII GAAGA 6 cut(s) 422, 530, 581, 1121, 1187, 1520
MflI RGATCY 3 cut(s) 739, 841, 1136
MhlI GDGCHC 3 cut(s) 136, 654, 720
MlyI GAGTC 2 cut(s) 197, 398
MseI TTAA 6 cut(s) 96, 327, 501, 608, 744, 1422
MslI CAYNNNNRTG 2 cut(s) 1235, 1461
MspA1I CMGCKG 2 cut(s) 641, 1130
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 513, 769
MspR9I CCNGG 7 cut(s) 381, 513, 801, 942, 962, 1050, 1333
MvaI CCWGG 6 cut(s) 381, 801, 942, 962, 1050, 1333
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 493, 505, 710, 908
NciI CCSGG 1 cut(s) 513
NdeII GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
NlaIV GGNNCC 4 cut(s) 133, 1067, 1144, 1337
NmuCI GTSAC 1 cut(s) 392
NruI TCGCGA 1 cut(s) 345
NspI RCATGY 5 cut(s) 464, 909, 1012, 1060, 1117
PagI TCATGA 1 cut(s) 834
PceI AGGCCT 1 cut(s) 1452
PciI ACATGT 1 cut(s) 905
PfeI GAWTC 4 cut(s) 56, 233, 283, 599
PflFI GACNNNGTC 1 cut(s) 1279
PflMI CCANNNNNTGG 1 cut(s) 1152
PfoI TCCNGGA 2 cut(s) 379, 511
PkrI GCNGC 3 cut(s) 498, 643, 829
PleI GAGTC 2 cut(s) 196, 398
PpsI GAGTC 2 cut(s) 196, 398
Ppu21I YACGTR 1 cut(s) 627
PscI ACATGT 1 cut(s) 905
PshBI ATTAAT 1 cut(s) 1422
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 6 cut(s) 379, 799, 940, 960, 1048, 1331
PspGI CCWGG 6 cut(s) 379, 799, 940, 960, 1048, 1331
PspN4I GGNNCC 4 cut(s) 133, 1067, 1144, 1337
PsrI GAACNNNNNNTAC 4 cut(s) 849, 881, 1472, 1504
PsuI RGATCY 3 cut(s) 739, 841, 1136
PsyI GACNNNGTC 1 cut(s) 1279
PvuII CAGCTG 1 cut(s) 1130
RruI TCGCGA 1 cut(s) 345
RsaI GTAC 6 cut(s) 625, 782, 858, 1055, 1337, 1534
RsaNI GTAC 6 cut(s) 624, 781, 857, 1054, 1336, 1533
RseI CAYNNNNRTG 2 cut(s) 1235, 1461
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 6 cut(s) 96, 327, 501, 608, 744, 1422
SatI GCNGC 3 cut(s) 497, 642, 828
Sau3AI GATC 9 cut(s) 322, 660, 673, 739, 841, 954, 1136, 1435, 1439
SchI GAGTC 2 cut(s) 197, 398
ScrFI CCNGG 7 cut(s) 381, 513, 801, 942, 962, 1050, 1333
SduI GDGCHC 3 cut(s) 136, 654, 720
SexAI ACCWGGT 1 cut(s) 799
SfaNI GCATC 5 cut(s) 428, 517, 1091, 1186, 1230
SgrAI CRCCGGYG 1 cut(s) 768
SmiMI CAYNNNNRTG 2 cut(s) 1235, 1461
SmlI CTYRAG 4 cut(s) 371, 454, 467, 743
SmoI CTYRAG 4 cut(s) 371, 454, 467, 743
SseBI AGGCCT 1 cut(s) 1452
SsiI CCGC 4 cut(s) 129, 439, 496, 639
SstI GAGCTC 1 cut(s) 654
StuI AGGCCT 1 cut(s) 1452
StyD4I CCNGG 7 cut(s) 379, 511, 799, 940, 960, 1048, 1331
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 3 cut(s) 629, 985, 1127
TaqI TCGA 2 cut(s) 541, 1438
TatI WGTACW 2 cut(s) 856, 1532
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 4 cut(s) 56, 233, 283, 599
Tru1I TTAA 6 cut(s) 96, 327, 501, 608, 744, 1422
Tru9I TTAA 6 cut(s) 96, 327, 501, 608, 744, 1422
TscAI CASTG 2 cut(s) 999, 1222
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 2 cut(s) 641, 827
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 8 cut(s) 17, 48, 495, 776, 808, 851, 1445, 1572
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 2 cut(s) 999, 1222
Tth111I GACNNNGTC 1 cut(s) 1279
Van91I CCANNNNNTGG 1 cut(s) 1152
Vha464I CTTAAG 1 cut(s) 743
VneI GTGCAC 1 cut(s) 716
VspI ATTAAT 1 cut(s) 1422
XapI RAATTY 2 cut(s) 1208, 1384
XceI RCATGY 5 cut(s) 464, 909, 1012, 1060, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.