Prupe.4G015900_v2.0.a1

Malonyl-CoA decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0005142
Physical Location & Seq
Forward (+)
756189 .. 759222
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G015900.1

Sequence Viewer

Length: 822 bp
ATGTCCTTCCGTAAGGATGCGATTTGGGCTGCCATCTCGACTTCGGCAGCCGTTTGGGTAGCGGGGGCATTTCCGAAGGGAGTGTTTGGAGGTAGCGCTGGGCTAGCTCCGCTCTGCCTTCCGAACGGTACCCCCTCTTCCGCTAGGAACCCTGGCTTACAAGGGATCAACCTGGGAAGGTTTCTAATCAAACGTGTGATCACACTTGTGAAAAGAGAAATGACAAATATTTCTACATTTGCGACTCTCAGCCCCATCCCAGGGTACATGCAGTGGCTCCTATCTAAGCTGGCTTCTCAATCAAAACTTTCTGAAGGTGAAGACATACAACATTCACCAGCTGATACATCTGGTTCTACGTTTTGGGAGAACATACTTGAACCAGAAGAGGAAAGAGCACTGATGGATGCCTCTGTGGAATTCACTTCTGGGAAAAACAGCATGGAAGTGTTGTTCAATTTATTGACTTCGCCAAACCATGAGTGGACAAGTTCTGATAAATTGCTTTCAGCATTAAAACCCCCTCTAATGCGACTGTGTGCCAGGTACCTTCTGCAAGAGAAAAAGAGAGGAAAGGCTCTGGATTCTGTTGCAAATTTTCACTTACAAAATGGAGCTATGGTTGAAAGAATAAATTGGATGGCAGATCGGTCAGAGAAAGGCCTTTATCAAAGTGGAGGTATTATGGTGAACTATGTTTACAGATTGGGGAAAATTGAAGACTATGCTCGGTCATATTTCAGTGCAGGGCATATCCATACTTCTAGCGATCTAAGCCGTTATGTTAAGCCATTGGAGGAACCTCAAGTGACAACATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294
KEGG Pathways
Metabolic & Signaling
ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152
Pfam Domains
Protein Families
MCD MCD_N

Protein Analysis

274

Amino Acids

30.15

Weight (kDa)

8.77

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 128, 546
AccB1I GGYRCC 2 cut(s) 128, 546
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 3 cut(s) 62, 110, 141
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 419, 595
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 3 cut(s) 130, 266, 548
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 260, 261
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 4 cut(s) 380, 457, 626, 719
AjnI CCWGG 4 cut(s) 151, 171, 259, 542
AleI CACNNNNGTG 1 cut(s) 206
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 4 cut(s) 107, 289, 341, 617
AluI AGCT 4 cut(s) 107, 289, 341, 617
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 1 cut(s) 173
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 29, 47
ApoI RAATTY 2 cut(s) 419, 595
Asp718I GGTACC 2 cut(s) 128, 546
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 327, 329, 700
AsuNHI GCTAGC 1 cut(s) 103
BanI GGYRCC 2 cut(s) 128, 546
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbsI GAAGAC 2 cut(s) 327, 726
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 16, 59
BccI CCATC 4 cut(s) 41, 263, 397, 634
BceAI ACGGC 2 cut(s) 35, 762
BciT130I CCWGG 4 cut(s) 153, 173, 261, 544
BclI TGATCA 1 cut(s) 198
BfaI CTAG 3 cut(s) 104, 144, 765
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 2 cut(s) 30, 48
BlsI GCNGC 2 cut(s) 31, 49
Bme1390I CCNGG 4 cut(s) 153, 173, 261, 544
BmiI GGNNCC 5 cut(s) 130, 149, 278, 548, 801
BmrFI CCNGG 4 cut(s) 153, 173, 261, 544
BmsI GCATC 2 cut(s) 7, 397
BmtI GCTAGC 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 327, 726
BpuEI CTTGAG 1 cut(s) 789
BsaJI CCNNGG 4 cut(s) 151, 172, 259, 260
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 261
BseBI CCWGG 4 cut(s) 153, 173, 261, 544
BseDI CCNNGG 4 cut(s) 151, 172, 259, 260
BseGI GGATG 4 cut(s) 22, 255, 412, 645
BseLI CCNNNNNNNGG 2 cut(s) 260, 261
BseMII CTCAG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 16, 59
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 1 cut(s) 663
BshNI GGYRCC 2 cut(s) 128, 546
BsiHKAI GWGCWC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 260, 261
BsnI GGCC 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 4 cut(s) 165, 198, 646, 769
BspACI CCGC 3 cut(s) 62, 110, 141
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 5 cut(s) 130, 149, 278, 548, 801
BspOI GCTAGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 2 cut(s) 128, 546
BsrBI CCGCTC 1 cut(s) 112
BssECI CCNNGG 4 cut(s) 151, 172, 259, 260
BssMI GATC 4 cut(s) 165, 198, 646, 769
Bst2UI CCWGG 4 cut(s) 153, 173, 261, 544
Bst4CI ACNGT 2 cut(s) 128, 537
Bst6I CTCTTC 2 cut(s) 142, 381
BstC8I GCNNGC 2 cut(s) 105, 291
BstDEI CTNAG 3 cut(s) 248, 285, 773
BstF5I GGATG 4 cut(s) 22, 255, 412, 645
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 168, 201, 649, 772
BstMBI GATC 4 cut(s) 165, 198, 646, 769
BstMWI GCNNNNNNNGC 4 cut(s) 26, 104, 109, 774
BstNI CCWGG 4 cut(s) 153, 173, 261, 544
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 151, 171, 259, 542
BstV1I GCAGC 2 cut(s) 16, 59
BstV2I GAAGAC 2 cut(s) 327, 726
BsuRI GGCC 1 cut(s) 663
BtsCI GGATG 4 cut(s) 22, 255, 412, 645
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 3 cut(s) 278, 398, 748
Cac8I GCNNGC 2 cut(s) 105, 291
CfoI GCGC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 129, 265, 547
CviAII CATG 3 cut(s) 268, 442, 479
CviQI GTAC 3 cut(s) 129, 265, 547
DdeI CTNAG 3 cut(s) 248, 285, 773
DpnI GATC 4 cut(s) 167, 200, 648, 771
DpnII GATC 4 cut(s) 165, 198, 646, 769
Eam1104I CTCTTC 2 cut(s) 142, 381
EarI CTCTTC 2 cut(s) 142, 381
Eco147I AGGCCT 1 cut(s) 663
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 419
EcoRII CCWGG 4 cut(s) 151, 171, 259, 542
FaeI CATG 3 cut(s) 271, 445, 482
FatI CATG 3 cut(s) 267, 441, 478
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 30, 48
FokI GGATG 4 cut(s) 29, 242, 419, 652
Fsp4HI GCNGC 2 cut(s) 30, 48
FspBI CTAG 3 cut(s) 104, 144, 765
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 30, 48
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 663
HhaI GCGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 271, 445, 482
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 2 cut(s) 244, 584
HphI GGTGA 3 cut(s) 327, 329, 700
Hpy166II GTNNAC 3 cut(s) 486, 691, 700
Hpy188I TCNGA 5 cut(s) 75, 123, 313, 496, 655
Hpy188III TCNNGA 2 cut(s) 37, 581
Hpy8I GTNNAC 3 cut(s) 486, 691, 700
HpyAV CCTTC 6 cut(s) 16, 70, 128, 171, 308, 560
HpyCH4III ACNGT 2 cut(s) 128, 537
HpyCH4IV ACGT 2 cut(s) 193, 359
HpyCH4V TGCA 4 cut(s) 271, 556, 593, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 104, 109, 774
HpyF3I CTNAG 3 cut(s) 248, 285, 773
HpySE526I ACGT 2 cut(s) 193, 359
Hsp92II CATG 3 cut(s) 271, 445, 482
HspAI GCGC 1 cut(s) 96
KpnI GGTACC 2 cut(s) 132, 550
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 4 cut(s) 165, 198, 646, 769
LmnI GCTCC 3 cut(s) 112, 282, 614
Lsp1109I GCAGC 2 cut(s) 16, 59
LweI GCATC 2 cut(s) 7, 397
MaeI CTAG 3 cut(s) 104, 144, 765
MaeII ACGT 2 cut(s) 193, 359
MaeIII GTNAC 1 cut(s) 808
MalI GATC 4 cut(s) 167, 200, 648, 771
MbiI CCGCTC 1 cut(s) 112
MboI GATC 4 cut(s) 165, 198, 646, 769
MboII GAAGA 4 cut(s) 129, 332, 398, 731
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 6 cut(s) 419, 457, 500, 595, 634, 714
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 9 cut(s) 83, 145, 382, 421, 534, 563, 671, 790, 813
MseI TTAA 2 cut(s) 515, 786
MslI CAYNNNNRTG 2 cut(s) 206, 446
MspA1I CMGCKG 1 cut(s) 341
MspR9I CCNGG 4 cut(s) 153, 173, 261, 544
MvaI CCWGG 4 cut(s) 153, 173, 261, 544
MwoI GCNNNNNNNGC 4 cut(s) 26, 104, 109, 774
NdeII GATC 4 cut(s) 165, 198, 646, 769
NheI GCTAGC 1 cut(s) 103
NlaIII CATG 3 cut(s) 271, 445, 482
NlaIV GGNNCC 5 cut(s) 130, 149, 278, 548, 801
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 206
PasI CCCWGGG 1 cut(s) 260
PceI AGGCCT 1 cut(s) 663
PfeI GAWTC 1 cut(s) 584
PkrI GCNGC 2 cut(s) 31, 49
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 4 cut(s) 151, 171, 259, 542
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 4 cut(s) 151, 171, 259, 542
PspN4I GGNNCC 5 cut(s) 130, 149, 278, 548, 801
PsrI GAACNNNNNNTAC 2 cut(s) 683, 715
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 3 cut(s) 130, 266, 548
RsaNI GTAC 3 cut(s) 129, 265, 547
RseI CAYNNNNRTG 2 cut(s) 206, 446
SaqAI TTAA 2 cut(s) 515, 786
SatI GCNGC 2 cut(s) 30, 48
Sau3AI GATC 4 cut(s) 165, 198, 646, 769
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 4 cut(s) 153, 173, 261, 544
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 2 cut(s) 7, 397
SmiMI CAYNNNNRTG 2 cut(s) 206, 446
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
Sse9I AATT 6 cut(s) 419, 457, 500, 595, 634, 714
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 3 cut(s) 62, 110, 141
SspI AATATT 1 cut(s) 229
SspMI CTAG 3 cut(s) 104, 144, 765
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 4 cut(s) 151, 171, 259, 542
TaaI ACNGT 2 cut(s) 128, 537
TaiI ACGT 2 cut(s) 196, 362
TaqI TCGA 1 cut(s) 38
TaqII GACCGA 2 cut(s) 639, 720
TasI AATT 6 cut(s) 419, 457, 500, 595, 634, 714
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 515, 786
Tru9I TTAA 2 cut(s) 515, 786
TscAI CASTG 3 cut(s) 278, 405, 748
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 2 cut(s) 29, 47
Tsp45I GTSAC 1 cut(s) 808
TspRI CASTG 3 cut(s) 278, 405, 748
XapI RAATTY 2 cut(s) 419, 595
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XspI CTAG 3 cut(s) 104, 144, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.