Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2464840 .. 2467259

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAATGGATACAATCACTGCCCAAAATCGAGCTTCATGCTCATCTCAACGGTTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTGAGAAAGGCGTTATAGTGTTTGCTGATGTTGAACATGTCATTCAAAAAAATGATCGATCTTTGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACTGTGACAAGGATCACAAGAGAAGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTGAGTTACGAACTACTCCAAAGAGGAGTGATTCAATAGGTATGAGTAAACGTTCTTACATGGAAGCTGTAATCCAAGGTCTAAGATCTGTCAGTGAAGTCGATATTGATTTTGTTACCGCATCTGATTCTCAAAAACTGCACAATGCTGGTGATGGGATTGGAAGAAAGAAGATTTATGTTAGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAACTGTTAAGCTCGCATTGGAAATGAGAGATGTCGGGGTAGTTGGTATCGATCTTTCGGGGAATCCTCTTGTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATATGCCAAAGACAATGATCTTCACATCACTCTTCACTGTGGAGAGGTTCCCAATCCGAAAGAGATCCAAGCCATGCTTGATTTTAAACCGCATCGGATTGGACATGCCTGTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAATCTTTCCGGATTCCGGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCTTCCATCGATATACACCATTTCGCTGATCTTTACAATGCAAAGCATCCATTGATTCTATGCACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAACGAGTACGCCCTCGCTGTTCGTTCTCTTGGTCTTAGTAAAAGTGAAACCTTTGCATTGGCTAGAGCAGCCATAGACGCAACATTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTCATTTTTGATTCAGCCTCGCCAGAGCACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

355

Amino Acids

39.95

Weight (kDa)

5.71

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	8 - 122	1.4e-16	Adenosine deaminase
A_deaminase	PF00962	177 - 373	1.2e-29	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	765
AciI	CCGC	3 cut(s)	396, 501, 704
AclI	AACGTT	1 cut(s)	328
AclWI	GGATC	3 cut(s)	184, 236, 673
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	2 cut(s)	581, 772
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	8 cut(s)	131, 143, 167, 175, 312, 733, 757, 779
AluBI	AGCT	5 cut(s)	34, 82, 199, 344, 520
AluI	AGCT	5 cut(s)	34, 82, 199, 344, 520
Alw21I	GWGCWC	2 cut(s)	596, 1062
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	3 cut(s)	184, 236, 673
Aor13HI	TCCGGA	1 cut(s)	765
ApeKI	GCWGC	1 cut(s)	983
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
Asp700I	GAANNNNTTC	1 cut(s)	761
AsuHPI	GGTGA	2 cut(s)	110, 440
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	596, 1062
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	2 cut(s)	425, 830
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciVI	GTATCC	1 cut(s)	3
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	4 cut(s)	77, 87, 906, 978
BfuI	GTATCC	1 cut(s)	3
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	1 cut(s)	984
BlsI	GCNGC	1 cut(s)	985
BmiI	GGNNCC	2 cut(s)	55, 663
BmsI	GCATC	3 cut(s)	407, 715, 871
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	299
Bsa29I	ATCGAT	4 cut(s)	154, 558, 812, 825
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	2 cut(s)	765, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 772
Bse3DI	GCAATG	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	765
BseCI	ATCGAT	4 cut(s)	154, 558, 812, 825
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	791, 862
BseLI	CCNNNNNNNGG	2 cut(s)	581, 772
BseMI	GCAATG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	995
BsgI	GTGCAG	1 cut(s)	401
BshVI	ATCGAT	4 cut(s)	154, 558, 812, 825
BsiHKAI	GWGCWC	2 cut(s)	596, 1062
BsiSI	CCGG	2 cut(s)	766, 773
BslI	CCNNNNNNNGG	2 cut(s)	581, 772
BsmAI	GTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	596, 1062
Bsp13I	TCCGGA	1 cut(s)	765
BspACI	CCGC	3 cut(s)	396, 501, 704
BspDI	ATCGAT	4 cut(s)	154, 558, 812, 825
BspEI	TCCGGA	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	55, 663
BspPI	GGATC	3 cut(s)	184, 236, 673
BsrDI	GCAATG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	4 cut(s)	53, 220, 514, 653
Bst6I	CTCTTC	2 cut(s)	78, 651
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstC8I	GCNNGC	3 cut(s)	84, 522, 606
BstDEI	CTNAG	4 cut(s)	359, 470, 950, 1028
BstF5I	GGATG	2 cut(s)	791, 862
BstMAI	GTCTC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	983, 992, 1001
BstNSI	RCATGY	2 cut(s)	137, 722
BstV1I	GCAGC	1 cut(s)	995
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	362, 678
BstYI	RGATCY	2 cut(s)	362, 678
Bsu15I	ATCGAT	4 cut(s)	154, 558, 812, 825
BsuI	GTATCC	1 cut(s)	3
BsuTUI	ATCGAT	4 cut(s)	154, 558, 812, 825
BtsCI	GGATG	2 cut(s)	791, 862
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	4 cut(s)	17, 376, 649, 879
Cac8I	GCNNGC	3 cut(s)	84, 522, 606
ClaI	ATCGAT	4 cut(s)	154, 558, 812, 825
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	5 cut(s)	38, 134, 337, 688, 719
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	4 cut(s)	359, 470, 950, 1028
DraI	TTTAAA	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	78, 651
EarI	CTCTTC	2 cut(s)	78, 651
Eco130I	CCWWGG	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	5 cut(s)	41, 137, 340, 691, 722
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FatI	CATG	5 cut(s)	37, 133, 336, 687, 718
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	984
FokI	GGATG	2 cut(s)	778, 849
Fsp4HI	GCNGC	1 cut(s)	984
FspBI	CTAG	4 cut(s)	77, 87, 906, 978
GluI	GCNGC	1 cut(s)	984
HapII	CCGG	2 cut(s)	766, 773
HgaI	GACGC	1 cut(s)	1001
Hin1II	CATG	5 cut(s)	41, 137, 340, 691, 722
HinfI	GANTC	8 cut(s)	65, 308, 404, 497, 571, 769, 871, 1043
HpaII	CCGG	2 cut(s)	766, 773
HphI	GGTGA	2 cut(s)	110, 440
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	403, 672, 711
Hpy188III	TCNNGA	3 cut(s)	77, 278, 766
Hpy8I	GTNNAC	1 cut(s)	326
HpyCH4III	ACNGT	4 cut(s)	53, 220, 514, 653
HpyCH4IV	ACGT	2 cut(s)	328, 1062
HpyCH4V	TGCA	6 cut(s)	418, 608, 857, 879, 971, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	983, 992, 1001
HpyF3I	CTNAG	4 cut(s)	359, 470, 950, 1028
HpySE526I	ACGT	2 cut(s)	328, 1062
Hsp92II	CATG	5 cut(s)	41, 137, 340, 691, 722
Kpn2I	TCCGGA	1 cut(s)	765
Ksp22I	TGATCA	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	591
LpnPI	CCDG	5 cut(s)	411, 618, 736, 779, 786
Lsp1109I	GCAGC	1 cut(s)	995
LweI	GCATC	3 cut(s)	407, 715, 871
MaeI	CTAG	4 cut(s)	77, 87, 906, 978
MaeII	ACGT	2 cut(s)	328, 1062
MaeIII	GTNAC	4 cut(s)	220, 282, 391, 802
MflI	RGATCY	2 cut(s)	362, 678
MhlI	GDGCHC	2 cut(s)	596, 1062
MlyI	GAGTC	2 cut(s)	59, 506
MmeI	TCCRAC	3 cut(s)	562, 819, 939
MnlI	CCTC	6 cut(s)	294, 585, 652, 920, 938, 1060
MroI	TCCGGA	1 cut(s)	765
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	4 cut(s)	516, 699, 788, 1017
MspI	CCGG	2 cut(s)	766, 773
MwoI	GCNNNNNNNGC	3 cut(s)	983, 992, 1001
NlaIII	CATG	5 cut(s)	41, 137, 340, 691, 722
NlaIV	GGNNCC	2 cut(s)	55, 663
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	137, 722
PciI	ACATGT	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	6 cut(s)	308, 404, 571, 769, 871, 1043
PkrI	GCNGC	1 cut(s)	985
PleI	GAGTC	2 cut(s)	59, 505
PpsI	GAGTC	2 cut(s)	59, 505
PscI	ACATGT	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	55, 663
PsuI	RGATCY	2 cut(s)	362, 678
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
SaqAI	TTAA	4 cut(s)	516, 699, 788, 1017
SatI	GCNGC	1 cut(s)	984
SchI	GAGTC	2 cut(s)	59, 506
SduI	GDGCHC	2 cut(s)	596, 1062
SfaNI	GCATC	3 cut(s)	407, 715, 871
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SsiI	CCGC	3 cut(s)	396, 501, 704
SspMI	CTAG	4 cut(s)	77, 87, 906, 978
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	53, 220, 514, 653
TaiI	ACGT	2 cut(s)	331, 1065
TaqI	TCGA	6 cut(s)	30, 154, 378, 558, 812, 825
TfiI	GAWTC	6 cut(s)	308, 404, 571, 769, 871, 1043
Tru1I	TTAA	4 cut(s)	516, 699, 788, 1017
Tru9I	TTAA	4 cut(s)	516, 699, 788, 1017
TscAI	CASTG	4 cut(s)	24, 376, 656, 886
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	983
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	26, 1024, 1026
TspRI	CASTG	4 cut(s)	24, 376, 656, 886
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	2 cut(s)	137, 722
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	4 cut(s)	77, 87, 906, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.