Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2270706 .. 2273121

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGAAGTGGGTGTCAATGCCAAAGGTGGAGCTTCATGCTCATCTCAATGGATCTATTAGAGACTCTACTTTACTAGAACTTGCAAGAGATTTGGGTGAGAAGGGTGTCATAGTTTTCTCTGATTTTGAGCATGTTATACAGAAAGATGACCGTTCTTTAACCGAAGTGTTCAAGCTGTTTGACCTGATCCATATTGTTACTACTGACCACCAAATTATCACAAGAATCACCAAAGAAGTTATTGAAGATTTTGCTGCTGAGAATGTTGTGTATCTGGAGCTAAGAACAACTCCAAAGAAAAATGATTCCATAGGAATGAGCAAACGCTCTTACTTGGAAGCAGTACTGGAGGGTATAAAGGCTGTGAGTACAGTTGATGTTGATTTTAGGCCTCATGATGCTGTTGTCAGGATTCCCAAGAATTCTCCACCTATATATGATAATGGAAGTACAAGAAAAAAGATTTACGTGAGACTTCTTTTGAGCATTGATCGCCGGGGAACAACAGAGGCTGCAATGGAAACTGTGAATCTTGCACTGGAAATGAGAGATTTAGGGGTGGTTGGTATCGATCTTTCTGGGAATCCGATTGTGGGAGATTGGAGTACATATTTGCCAGCATTAAAATTTGCTAGAGAGCAGGGTCTTTATATAACCCTGCATTGCGGAGAGGTGCCTAATCCAAAGGAGGTACGATCAATGCTAGATTTTCTACCGCAGAGGATTGGCCATGCCTGTTGCTTTGAAGAAGCAGAATGGGAAAAGTTAAAATCTTCAAGTATTCCGGTTGAGATTTGTTTGACATCCAACATCAGGACCAATACAATTCCTTCGCTCGATATTCATCATTTTGCTGATCTATACAGTGCAAAGCATCCTCTAGTCCTCTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCTTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACAAGAAATGCGGTCGAGTTTATATTTGCTGGTGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCTGCTGAACAGAAGCTCGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

361

Amino Acids

40.61

Weight (kDa)

5.54

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	8 - 350	5.2e-50	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	3 cut(s)	669, 719, 1001
AclWI	GGATC	2 cut(s)	61, 184
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	424, 629
AfaI	GTAC	6 cut(s)	348, 373, 454, 610, 696, 938
AfiI	CCNNNNNNNGG	2 cut(s)	596, 816
AgsI	TTSAA	4 cut(s)	175, 248, 749, 780
AluBI	AGCT	5 cut(s)	34, 178, 283, 988, 1075
AluI	AGCT	5 cut(s)	34, 178, 283, 988, 1075
Alw26I	GTCTC	2 cut(s)	57, 469
AlwI	GGATC	2 cut(s)	61, 184
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	392, 730
ApeKI	GCWGC	3 cut(s)	257, 515, 947
ApoI	RAATTY	2 cut(s)	424, 629
Asp700I	GAANNNNTTC	1 cut(s)	981
AspS9I	GGNCC	1 cut(s)	819
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	110, 223, 1034
AvaII	GGWCC	1 cut(s)	819
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	244, 502, 934
BccI	CCATC	1 cut(s)	1019
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	57, 469
BfaI	CTAG	4 cut(s)	77, 636, 707, 884
BisI	GCNGC	3 cut(s)	258, 516, 948
BlsI	GCNGC	3 cut(s)	259, 517, 949
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	391, 886
BpmI	CTGGAG	2 cut(s)	299, 371
BpuMI	CCSGG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 816
Bse1I	ACTGG	2 cut(s)	354, 546
Bse3DI	GCAATG	2 cut(s)	525, 664
Bse8I	GATNNNNATC	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	2 cut(s)	806, 877
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	2 cut(s)	596, 816
BseMI	GCAATG	2 cut(s)	525, 664
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	354, 546
BseXI	GCAGC	3 cut(s)	244, 502, 934
BsgI	GTGCAG	1 cut(s)	877
Bsh1285I	CGRYCG	1 cut(s)	1005
BshFI	GGCC	2 cut(s)	394, 732
BshNI	GGYRCC	1 cut(s)	676
BshVI	ATCGAT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	1005
BsiSI	CCGG	2 cut(s)	499, 788
BslI	CCNNNNNNNGG	2 cut(s)	596, 816
BsmAI	GTCTC	2 cut(s)	57, 469
BsnI	GGCC	2 cut(s)	394, 732
Bsp143I	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
BspACI	CCGC	3 cut(s)	669, 719, 1001
BspANI	GGCC	2 cut(s)	394, 732
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	678
BspPI	GGATC	2 cut(s)	61, 184
BspT107I	GGYRCC	1 cut(s)	676
BsrDI	GCAATG	2 cut(s)	525, 664
BsrI	ACTGG	2 cut(s)	354, 546
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
Bst4CI	ACNGT	4 cut(s)	155, 376, 529, 869
Bst6I	CTCTTC	1 cut(s)	1028
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	261, 284
BstF5I	GGATG	2 cut(s)	806, 877
BstKTI	GATC	6 cut(s)	56, 192, 496, 577, 701, 862
BstMAI	GTCTC	2 cut(s)	57, 469
BstMBI	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
BstMCI	CGRYCG	1 cut(s)	1005
BstMWI	GCNNNNNNNGC	2 cut(s)	495, 953
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	244, 502, 934
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	394, 732
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	806, 877
BtsIMutI	CAGTG	2 cut(s)	539, 874
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	819
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	6 cut(s)	347, 372, 453, 609, 695, 937
CviAII	CATG	4 cut(s)	38, 134, 398, 734
CviQI	GTAC	6 cut(s)	347, 372, 453, 609, 695, 937
DdeI	CTNAG	2 cut(s)	261, 284
DpnI	GATC	6 cut(s)	55, 191, 495, 576, 700, 861
DpnII	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	1028
EarI	CTCTTC	1 cut(s)	1028
Eco147I	AGGCCT	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	819
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	4 cut(s)	41, 137, 401, 737
FatI	CATG	4 cut(s)	37, 133, 397, 733
Fnu4HI	GCNGC	3 cut(s)	258, 516, 948
FokI	GGATG	2 cut(s)	793, 864
Fsp4HI	GCNGC	3 cut(s)	258, 516, 948
FspBI	CTAG	4 cut(s)	77, 636, 707, 884
GluI	GCNGC	3 cut(s)	258, 516, 948
GsuI	CTGGAG	2 cut(s)	299, 371
HaeIII	GGCC	2 cut(s)	394, 732
HapII	CCGG	2 cut(s)	499, 788
Hin1II	CATG	4 cut(s)	41, 137, 401, 737
HinfI	GANTC	7 cut(s)	65, 228, 308, 415, 532, 586, 902
HpaII	CCGG	2 cut(s)	499, 788
HphI	GGTGA	3 cut(s)	110, 223, 1034
Hpy188I	TCNGA	2 cut(s)	124, 591
Hpy188III	TCNNGA	4 cut(s)	278, 398, 412, 817
HpyAV	CCTTC	3 cut(s)	97, 843, 963
HpyCH4III	ACNGT	4 cut(s)	155, 376, 529, 869
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	7 cut(s)	86, 518, 539, 664, 872, 894, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	495, 953
HpyF3I	CTNAG	2 cut(s)	261, 284
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	41, 137, 401, 737
Kzo9I	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
LmnI	GCTCC	2 cut(s)	31, 280
Lsp1109I	GCAGC	3 cut(s)	244, 502, 934
LweI	GCATC	2 cut(s)	391, 886
MaeI	CTAG	4 cut(s)	77, 636, 707, 884
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	6 cut(s)	55, 191, 495, 576, 700, 861
MboI	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
MboII	GAAGA	4 cut(s)	260, 761, 768, 1045
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	5 cut(s)	216, 424, 629, 828, 1040
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	834, 954
MnlI	CCTC	9 cut(s)	346, 405, 505, 667, 685, 717, 891, 899, 966
Mox20I	TGGCCA	1 cut(s)	732
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	4 cut(s)	161, 626, 770, 1043
MslI	CAYNNNNRTG	2 cut(s)	48, 317
Msp20I	TGGCCA	1 cut(s)	732
MspI	CCGG	2 cut(s)	499, 788
MspR9I	CCNGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	495, 953
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
NlaIII	CATG	4 cut(s)	41, 137, 401, 737
NlaIV	GGNNCC	1 cut(s)	678
NspI	RCATGY	1 cut(s)	137
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	6 cut(s)	228, 308, 415, 532, 586, 902
PkrI	GCNGC	3 cut(s)	259, 517, 949
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	819
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	6 cut(s)	348, 373, 454, 610, 696, 938
RsaNI	GTAC	6 cut(s)	347, 372, 453, 609, 695, 937
RseI	CAYNNNNRTG	2 cut(s)	48, 317
SaqAI	TTAA	4 cut(s)	161, 626, 770, 1043
SatI	GCNGC	3 cut(s)	258, 516, 948
Sau3AI	GATC	6 cut(s)	53, 189, 493, 574, 698, 859
Sau96I	GGNCC	1 cut(s)	819
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	500
SfaNI	GCATC	2 cut(s)	391, 886
SinI	GGWCC	1 cut(s)	819
SmiMI	CAYNNNNRTG	2 cut(s)	48, 317
Sse9I	AATT	5 cut(s)	216, 424, 629, 828, 1040
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	3 cut(s)	669, 719, 1001
SspI	AATATT	1 cut(s)	981
SspMI	CTAG	4 cut(s)	77, 636, 707, 884
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	4 cut(s)	155, 376, 529, 869
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	4 cut(s)	573, 840, 1005, 1077
TasI	AATT	5 cut(s)	216, 424, 629, 828, 1040
TatI	WGTACW	5 cut(s)	346, 371, 452, 608, 936
TfiI	GAWTC	6 cut(s)	228, 308, 415, 532, 586, 902
Tru1I	TTAA	4 cut(s)	161, 626, 770, 1043
Tru9I	TTAA	4 cut(s)	161, 626, 770, 1043
TscAI	CASTG	2 cut(s)	546, 874
TseI	GCWGC	3 cut(s)	257, 515, 947
TspDTI	ATGAA	2 cut(s)	26, 836
TspRI	CASTG	2 cut(s)	546, 874
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	2 cut(s)	424, 629
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	4 cut(s)	77, 636, 707, 884
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.