Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Forward (+)

28075102 .. 28077740

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26900.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGGACTGGCTGTCAATGCCAAAGGTGGAACTTCACGCTCACCTCAACGGATCCGTCAGAGACTCCACTTTACTAGAACTTGCTAGTGTTTTGGGTGAGAAGGGTGTCATAGTTTTCTCAGATGTGGAGCACGTTATTCGGAAAAATGACCGTTCTTTAACCGAAGTGTTCAGGTTGTTTGACTTGATCCACATTCTTACAACTGACCACAAAGTTATCACAAGAATTACGAAAGAAGTTATTGAAGATTTTGCTTCTGAGAATGTTGTGTATCTGGAGCTAAGAACAACTCCGAAGAATAATGCGTCGATAGGAATGAGCAAGCGCTCTTACTTGGGAGCAGTACTGGAGGGTATAAAGGCAGTCACTGCAGTTGATGTCGCTTTTAGGCCTCACAGTTCTGATGTTGGCAGTCAGAAGAATTCTTCACTTATAAACCATACATGTAGCGGAAGTGCAAGAAAAAAGATTTATGTTAGGATTCTTTTGAGCATTGACCGCCGGGAAACCACAGAGGCTGCAATGGAAACTGTGAAGCTTGCTCTGGAAATGAGAGATTTAGGGGTAGTTGGTATTGACCTTTCTGGAAACCCGATTGTGGGAGAATGGGTTACATTTTTTCCAGCCTTAAAATTTGCTAGAGAGCAGGGTCTTTATGTAACCCTTCATTGTGGAGAGGTGCCTAATCCAAAGGAGATACGAGCAATGCTAGATTTTCAACCACAGAGGATTGGCCATGCCTGTTGCTTCGAGGAAGAGGAATGGAAGACTTTGAAATCTTTAAGTATTCCGGTTGAGATTTGTTTGACGTCCAACATTAGGACTAATACAATTCCGTCACTTGACGTACATCATTTTGCTGATCTGTATAATGCAAAACATCCTTTAGTCATCTGCACAGATGATTCTGGGGTGTTCTCTACTAGTCTTTCCAACGAGTACAACCTCGCTGCAGCTGCATTTGGACTTGGAAAGAGGGAACTATTTCAACTAGCAAGAAATTCAATCGACTTTGTATTTGCTGATGATGGAGTGAAGAGAGAATTGAAGGAAATCGTCAATTCCGCTGAAAAGAAGCTAGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

364

Amino Acids

40.52

Weight (kDa)

5.88

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AatII	GACGTC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	682
AciI	CCGC	3 cut(s)	453, 502, 1068
AclWI	GGATC	3 cut(s)	48, 61, 184
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	3 cut(s)	424, 635, 1003
AcyI	GRCGYC	1 cut(s)	812
AfaI	GTAC	3 cut(s)	348, 852, 944
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	601, 602, 822
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	248, 722, 778, 992, 1008, 1051
AhdI	GACNNNNNGTC	1 cut(s)	13
AhlI	ACTAGT	1 cut(s)	926
AluBI	AGCT	4 cut(s)	283, 541, 959, 1081
AluI	AGCT	4 cut(s)	283, 541, 959, 1081
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	3 cut(s)	48, 61, 184
AlwNI	CAGNNNCTG	2 cut(s)	371, 521
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	2 cut(s)	392, 736
ApeKI	GCWGC	4 cut(s)	521, 953, 956, 959
ApoI	RAATTY	3 cut(s)	424, 635, 1003
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	987
AspLEI	GCGC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	35, 110
BalI	TGGCCA	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	508, 940, 946, 968
BccI	CCATC	1 cut(s)	1025
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	7 cut(s)	77, 87, 642, 713, 927, 995, 1082
BfmI	CTRYAG	2 cut(s)	372, 954
BfoI	RGCGCY	1 cut(s)	331
BglII	AGATCT	1 cut(s)	1084
BisI	GCNGC	4 cut(s)	522, 954, 957, 960
BlsI	GCNGC	4 cut(s)	523, 955, 958, 961
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	506
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	55, 684
BmrFI	CCNGG	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	776
BpmI	CTGGAG	2 cut(s)	299, 371
BpuMI	CCSGG	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	812
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	601, 602, 822
Bse1I	ACTGG	2 cut(s)	14, 354
Bse3DI	GCAATG	2 cut(s)	531, 714
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	3 cut(s)	601, 602, 822
BseMI	GCAATG	2 cut(s)	531, 714
BseMII	CTCAG	2 cut(s)	135, 252
BseNI	ACTGG	2 cut(s)	14, 354
BseXI	GCAGC	4 cut(s)	508, 940, 946, 968
BsgI	GTGCAG	1 cut(s)	883
BshFI	GGCC	2 cut(s)	394, 738
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	505, 794
BslI	CCNNNNNNNGG	3 cut(s)	601, 602, 822
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	394, 738
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	53, 189, 865, 1084
BspACI	CCGC	3 cut(s)	453, 502, 1068
BspANI	GGCC	2 cut(s)	394, 738
BspCNI	CTCAG	2 cut(s)	134, 253
BspLI	GGNNCC	2 cut(s)	55, 684
BspMAI	CTGCAG	2 cut(s)	376, 958
BspPI	GGATC	3 cut(s)	48, 61, 184
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	531, 714
BsrI	ACTGG	2 cut(s)	14, 354
BssMI	GATC	4 cut(s)	53, 189, 865, 1084
BssNI	GRCGYC	1 cut(s)	812
Bst4CI	ACNGT	3 cut(s)	155, 401, 535
Bst6I	CTCTTC	2 cut(s)	753, 1034
BstACI	GRCGYC	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	326, 543
BstDEI	CTNAG	3 cut(s)	121, 261, 284
BstF5I	GGATG	1 cut(s)	883
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	4 cut(s)	56, 192, 868, 1087
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	53, 189, 865, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 371, 501, 959
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	372, 954
BstV1I	GCAGC	4 cut(s)	508, 940, 946, 968
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	2 cut(s)	53, 1084
BstYI	RGATCY	2 cut(s)	53, 1084
BsuRI	GGCC	2 cut(s)	394, 738
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	326, 543
CaiI	CAGNNNCTG	2 cut(s)	371, 521
CfoI	GCGC	1 cut(s)	330
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	3 cut(s)	347, 851, 943
CviAII	CATG	2 cut(s)	447, 740
CviJI	RGCY	9 cut(s)	13, 283, 394, 521, 541, 629, 738, 959, 1081
CviKI_1	RGCY	9 cut(s)	13, 283, 394, 521, 541, 629, 738, 959, 1081
CviQI	GTAC	3 cut(s)	347, 851, 943
DdeI	CTNAG	3 cut(s)	121, 261, 284
DpnI	GATC	4 cut(s)	55, 191, 867, 1086
DpnII	GATC	4 cut(s)	53, 189, 865, 1084
DriI	GACNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	753, 1034
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	2 cut(s)	753, 1034
Eco147I	AGGCCT	1 cut(s)	394
Eco47III	AGCGCT	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	2 cut(s)	450, 743
FatI	CATG	2 cut(s)	446, 739
Fnu4HI	GCNGC	4 cut(s)	522, 954, 957, 960
FokI	GGATG	1 cut(s)	870
Fsp4HI	GCNGC	4 cut(s)	522, 954, 957, 960
FspBI	CTAG	7 cut(s)	77, 87, 642, 713, 927, 995, 1082
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	522, 954, 957, 960
GsuI	CTGGAG	2 cut(s)	299, 371
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	394, 738
HapII	CCGG	2 cut(s)	505, 794
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	812
Hin1II	CATG	2 cut(s)	450, 743
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	3 cut(s)	65, 484, 908
HpaII	CCGG	2 cut(s)	505, 794
HphI	GGTGA	2 cut(s)	35, 110
Hpy188I	TCNGA	7 cut(s)	62, 124, 144, 262, 297, 406, 420
Hpy188III	TCNNGA	3 cut(s)	278, 548, 588
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	3 cut(s)	97, 677, 1045
HpyCH4III	ACNGT	3 cut(s)	155, 401, 535
HpyCH4IV	ACGT	3 cut(s)	135, 812, 849
HpyCH4V	TGCA	7 cut(s)	374, 461, 524, 878, 900, 956, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 371, 501, 959
HpyF3I	CTNAG	3 cut(s)	121, 261, 284
HpySE526I	ACGT	3 cut(s)	135, 812, 849
Hsp92I	GRCGYC	1 cut(s)	812
Hsp92II	CATG	2 cut(s)	450, 743
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	53, 189, 865, 1084
LmnI	GCTCC	3 cut(s)	130, 280, 341
Lsp1109I	GCAGC	4 cut(s)	508, 940, 946, 968
MaeI	CTAG	7 cut(s)	77, 87, 642, 713, 927, 995, 1082
MaeII	ACGT	3 cut(s)	135, 812, 849
MaeIII	GTNAC	4 cut(s)	367, 613, 661, 840
MalI	GATC	4 cut(s)	55, 191, 867, 1086
MboI	GATC	4 cut(s)	53, 189, 865, 1084
MboII	GAAGA	7 cut(s)	260, 310, 420, 433, 770, 781, 1051
MflI	RGATCY	2 cut(s)	53, 1084
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	7 cut(s)	228, 424, 635, 834, 1003, 1046, 1063
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	840, 960
Mox20I	TGGCCA	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	3 cut(s)	161, 632, 785
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	2 cut(s)	959, 1070
MspI	CCGG	2 cut(s)	505, 794
MspR9I	CCNGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	4 cut(s)	19, 371, 501, 959
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	53, 189, 865, 1084
NlaIII	CATG	2 cut(s)	450, 743
NlaIV	GGNNCC	2 cut(s)	55, 684
NmuCI	GTSAC	2 cut(s)	367, 840
NspI	RCATGY	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	394
PciI	ACATGT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	2 cut(s)	484, 908
PkrI	GCNGC	4 cut(s)	523, 955, 958, 961
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PscI	ACATGT	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	55, 684
PstI	CTGCAG	2 cut(s)	376, 958
PstNI	CAGNNNCTG	2 cut(s)	371, 521
PsuI	RGATCY	2 cut(s)	53, 1084
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	3 cut(s)	348, 852, 944
RsaNI	GTAC	3 cut(s)	347, 851, 943
SaqAI	TTAA	3 cut(s)	161, 632, 785
SatI	GCNGC	4 cut(s)	522, 954, 957, 960
Sau3AI	GATC	4 cut(s)	53, 189, 865, 1084
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	135
SfcI	CTRYAG	2 cut(s)	372, 954
SpeI	ACTAGT	1 cut(s)	926
Sse9I	AATT	7 cut(s)	228, 424, 635, 834, 1003, 1046, 1063
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	3 cut(s)	453, 502, 1068
SspMI	CTAG	7 cut(s)	77, 87, 642, 713, 927, 995, 1082
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	155, 401, 535
TaiI	ACGT	3 cut(s)	138, 815, 852
TaqI	TCGA	3 cut(s)	311, 753, 1011
TasI	AATT	7 cut(s)	228, 424, 635, 834, 1003, 1046, 1063
TatI	WGTACW	2 cut(s)	346, 942
TfiI	GAWTC	2 cut(s)	484, 908
Tru1I	TTAA	3 cut(s)	161, 632, 785
Tru9I	TTAA	3 cut(s)	161, 632, 785
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	367, 840
TseI	GCWGC	4 cut(s)	521, 953, 956, 959
Tsp45I	GTSAC	2 cut(s)	367, 840
TspDTI	ATGAA	1 cut(s)	659
TspGWI	ACGGA	3 cut(s)	46, 66, 828
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	3 cut(s)	424, 635, 1003
XceI	RCATGY	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	7 cut(s)	77, 87, 642, 713, 927, 995, 1082
ZraI	GACGTC	1 cut(s)	813
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.