Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2271847 .. 2274279

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAAGTGGGTGTCAATGCCAAAGGTGGAGCTTCATGCTCATCTCAATGGATCTATTAGAGACTCTACTTTACTAGAACTTGCAAGAGATTTGGGTGAGAAGGGTGTCGTAGTTTTCTCTGATTTTGAGCATGTTATACAGAAAGATGACCGTTCTTTAACCGAAGTGTTCAAGTTGTTTGACCTGATCCATATTGTTACAACTGACCACCAAATCATCACAAGAATCACCAAAGAAGTTATTGAAGATTTTGCTGCTGAGAATGTTGTGTATCTGGAGCTAAGAACAACTCCGAAGAAAAATGATTCCATAGGAATGAGCAAACGCTCTTACTTGGATGCAGTACTGGAGGGTATAAGGGCTGTGAGTACAGTTGATGTTGATTTTAGGCCTCATGATGCTGTTGTCAGGATTCCCAAGAATTCTCCACCTATATATGATACATGTAATGGAAGTACAAGAAAAAAGATTTACGTGAGACTTCTTTTGAGCATTGATCGTCGGGGAACCACAGAGGCTGCAATGGAAACTGTGAATCTTGCACTGGAAATGAGAGATTTAGGGGTGGTTGGTATCGATCTTTCTGGGAATCCGATGGTGGGAGATTGGAGTACATATTTGCCAGCATTAAAATTTGCTAGAGAGCAGGGTCTTTATATAACCCTGCATTGCGGAGAGGTGCCTAATCCAAAGGAGGTACAATCAATGCTAGATTTTCTACCGCAGAGGATTGGCCATGCCTGTTGCTTTGAAGAAGCAGAATGGGAAAAGTTAAAATCTTCAAGTATTCCGGTTGAGATTTGTTTGACATCCAACATCAGGACCAATACAATTCCTTCGCTCGATATTCATCATTTTGCTGATCTGTACAGTGCAAAGCATCCTCTAGTCCTCTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCTTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACAAGAAATGCAGTCGAGTTTATATTTGCTGGTGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCTGCTGAACAGAAGCTCGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

363

Amino Acids

40.8

Weight (kDa)

5.45

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	8 - 352	1.4e-49	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AciI	CCGC	2 cut(s)	675, 725
AclWI	GGATC	2 cut(s)	61, 184
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	2 cut(s)	424, 635
AfaI	GTAC	7 cut(s)	348, 373, 460, 616, 702, 872, 944
AfiI	CCNNNNNNNGG	2 cut(s)	602, 822
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	175, 248, 755, 786
AluBI	AGCT	4 cut(s)	34, 283, 994, 1081
AluI	AGCT	4 cut(s)	34, 283, 994, 1081
Alw26I	GTCTC	2 cut(s)	57, 475
AlwI	GGATC	2 cut(s)	61, 184
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	392, 736
ApeKI	GCWGC	3 cut(s)	257, 521, 953
ApoI	RAATTY	2 cut(s)	424, 635
Asp700I	GAANNNNTTC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	110, 223, 1040
AvaII	GGWCC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	244, 508, 940
BccI	CCATC	2 cut(s)	592, 1025
BcoDI	GTCTC	2 cut(s)	57, 475
BfaI	CTAG	4 cut(s)	77, 642, 713, 890
BisI	GCNGC	3 cut(s)	258, 522, 954
BlsI	GCNGC	3 cut(s)	259, 523, 955
BmcAI	AGTACT	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	825
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	511, 684
BmsI	GCATC	3 cut(s)	331, 391, 892
BpmI	CTGGAG	2 cut(s)	299, 371
Bsa29I	ATCGAT	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	852
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 822
Bse1I	ACTGG	2 cut(s)	354, 552
Bse3DI	GCAATG	2 cut(s)	531, 670
Bse8I	GATNNNNATC	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	579
BseGI	GGATG	3 cut(s)	346, 812, 883
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	2 cut(s)	602, 822
BseMI	GCAATG	2 cut(s)	531, 670
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	354, 552
BseXI	GCAGC	3 cut(s)	244, 508, 940
BsgI	GTGCAG	1 cut(s)	883
BshFI	GGCC	2 cut(s)	394, 738
BshNI	GGYRCC	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	602, 822
BsmAI	GTCTC	2 cut(s)	57, 475
BsnI	GGCC	2 cut(s)	394, 738
Bsp1407I	TGTACA	1 cut(s)	870
Bsp143I	GATC	5 cut(s)	53, 189, 499, 580, 865
BspACI	CCGC	2 cut(s)	675, 725
BspANI	GGCC	2 cut(s)	394, 738
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	511, 684
BspPI	GGATC	2 cut(s)	61, 184
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	531, 670
BsrGI	TGTACA	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	354, 552
BssMI	GATC	5 cut(s)	53, 189, 499, 580, 865
Bst4CI	ACNGT	4 cut(s)	155, 376, 535, 875
Bst6I	CTCTTC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	870
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	261, 284
BstF5I	GGATG	3 cut(s)	346, 812, 883
BstKTI	GATC	5 cut(s)	56, 192, 502, 583, 868
BstMAI	GTCTC	2 cut(s)	57, 475
BstMBI	GATC	5 cut(s)	53, 189, 499, 580, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstNSI	RCATGY	2 cut(s)	137, 450
BstV1I	GCAGC	3 cut(s)	244, 508, 940
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	394, 738
BsuTUI	ATCGAT	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	346, 812, 883
BtsIMutI	CAGTG	2 cut(s)	545, 880
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	825
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
CviAII	CATG	5 cut(s)	38, 134, 398, 447, 740
CviJI	RGCY	9 cut(s)	34, 283, 365, 394, 521, 738, 930, 994, 1081
CviKI_1	RGCY	9 cut(s)	34, 283, 365, 394, 521, 738, 930, 994, 1081
CviQI	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
DdeI	CTNAG	2 cut(s)	261, 284
DpnI	GATC	5 cut(s)	55, 191, 501, 582, 867
DpnII	GATC	5 cut(s)	53, 189, 499, 580, 865
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Eco147I	AGGCCT	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	5 cut(s)	41, 137, 401, 450, 743
FatI	CATG	5 cut(s)	37, 133, 397, 446, 739
Fnu4HI	GCNGC	3 cut(s)	258, 522, 954
FokI	GGATG	3 cut(s)	353, 799, 870
Fsp4HI	GCNGC	3 cut(s)	258, 522, 954
FspBI	CTAG	4 cut(s)	77, 642, 713, 890
GluI	GCNGC	3 cut(s)	258, 522, 954
GsuI	CTGGAG	2 cut(s)	299, 371
HaeIII	GGCC	2 cut(s)	394, 738
HapII	CCGG	1 cut(s)	794
Hin1II	CATG	5 cut(s)	41, 137, 401, 450, 743
HinfI	GANTC	7 cut(s)	65, 228, 308, 415, 538, 592, 908
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	3 cut(s)	110, 223, 1040
Hpy188I	TCNGA	3 cut(s)	124, 297, 597
Hpy188III	TCNNGA	4 cut(s)	278, 398, 412, 823
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	97, 849, 969
HpyCH4III	ACNGT	4 cut(s)	155, 376, 535, 875
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	9 cut(s)	86, 344, 524, 545, 670, 878, 900, 962, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	2 cut(s)	261, 284
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	41, 137, 401, 450, 743
Kzo9I	GATC	5 cut(s)	53, 189, 499, 580, 865
LmnI	GCTCC	2 cut(s)	31, 280
Lsp1109I	GCAGC	3 cut(s)	244, 508, 940
LweI	GCATC	3 cut(s)	331, 391, 892
MaeI	CTAG	4 cut(s)	77, 642, 713, 890
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	55, 191, 501, 582, 867
MboI	GATC	5 cut(s)	53, 189, 499, 580, 865
MboII	GAAGA	5 cut(s)	260, 310, 767, 774, 1051
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	4 cut(s)	424, 635, 834, 1046
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	840, 960
MnlI	CCTC	9 cut(s)	346, 405, 511, 673, 691, 723, 897, 905, 972
Mox20I	TGGCCA	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	4 cut(s)	161, 632, 776, 1049
MslI	CAYNNNNRTG	2 cut(s)	48, 317
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	959
NdeII	GATC	5 cut(s)	53, 189, 499, 580, 865
NlaIII	CATG	5 cut(s)	41, 137, 401, 450, 743
NlaIV	GGNNCC	2 cut(s)	511, 684
NspI	RCATGY	2 cut(s)	137, 450
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	394
PciI	ACATGT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	6 cut(s)	228, 308, 415, 538, 592, 908
PkrI	GCNGC	3 cut(s)	259, 523, 955
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	511, 684
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	7 cut(s)	348, 373, 460, 616, 702, 872, 944
RsaNI	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
RseI	CAYNNNNRTG	2 cut(s)	48, 317
SaqAI	TTAA	4 cut(s)	161, 632, 776, 1049
SatI	GCNGC	3 cut(s)	258, 522, 954
Sau3AI	GATC	5 cut(s)	53, 189, 499, 580, 865
Sau96I	GGNCC	1 cut(s)	825
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	3 cut(s)	331, 391, 892
SinI	GGWCC	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	48, 317
Sse9I	AATT	4 cut(s)	424, 635, 834, 1046
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	675, 725
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	4 cut(s)	77, 642, 713, 890
StuI	AGGCCT	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	155, 376, 535, 875
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	579, 846, 1011, 1083
TasI	AATT	4 cut(s)	424, 635, 834, 1046
TatI	WGTACW	6 cut(s)	346, 371, 458, 614, 870, 942
TfiI	GAWTC	6 cut(s)	228, 308, 415, 538, 592, 908
Tru1I	TTAA	4 cut(s)	161, 632, 776, 1049
Tru9I	TTAA	4 cut(s)	161, 632, 776, 1049
TscAI	CASTG	2 cut(s)	552, 880
TseI	GCWGC	3 cut(s)	257, 521, 953
TspDTI	ATGAA	2 cut(s)	26, 842
TspRI	CASTG	2 cut(s)	552, 880
VpaK11BI	GGWCC	1 cut(s)	825
XapI	RAATTY	2 cut(s)	424, 635
XceI	RCATGY	2 cut(s)	137, 450
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	4 cut(s)	77, 642, 713, 890
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.