Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Reverse (-)

1140088 .. 1143549

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGATGGAGGGCTGGGTGTCAATGCCAAAGGTGGAACTTCACGCTCACCTCAATGGATCTGTCAGAGACTCCACTTTACTAGAACTTGCCAGAGTTTTGGGTGAGAAGGGTGTCATAGTTTTCTCAGATGTGGAGCACGTTATACTGAAAAATGAACGTTCTTTAACCGAAGTGTTCAGGTTGTTTGACCTGATCCACATTCTTACTACTGACCACAAAATTATCACAAGAATTACCAAAGAAGTTATTGAAGATTTTGCTTCTGAGAATGTTGTGTATCTGGAGCTAAGAACAACTCCTAAGAAAAATGACTCCATAGGAATGAGCAAACGCTCTTACTTGGAAGCAGTATTGGAGGGTATAAAGGCTGTCAATACAGTTGATGTTGCTTTTAGGCCTCACAATGCTGATGTCAGCAATGTCAAGAGTTCTTCACTTATAAATGATACATGTAACGGAAGTACAAGAAAAGAGATTTATGTTAGGCTTCTTTTGAGCATTGACCGCAGGGAAAGCACAGAGGCTGCAATGGAAACTGTGAAGCTTGCACTGGAAATGAGAGATTTAGGTGTAGTTGGTATTGACCTTTCTGGAAATCCAATTGTGGGAGAATGGATGACATTTTTTCCAGCATTAAAATTTGCTAGAGAGCAGGGTCTTTATATAACCCTTCATTGTGGAGAGGTGCCTAATCCAAAGGAGATACAAGCAATGCTGGATTTTCTACCACAGAGGATTGGTCATGCATGTTGCTTCGAAGAAGAGGAATGGAAAAGGTTCAAATCTTTGAATATCCCGGTTGAGATTTGTTTGACATCCAACATCAGGACTAATTCAGTTCGTTCAATTGAAGTTCATCATTTTGCTGATCTGTATAATTCAAAACATCCTTTAGTCATCTGCACCGATGATTCTGGGGTGTTTTCTACCAGTCTTTCAAAGGAGTACAACCTTGCTGCTTCTGCGTTTGGTCTTGGAAGGAGGGGAATATTTCAGCTAGCACGAAATGCAATTGAATATATATTTGCTGATGATGAAGTGAAGAGAGAATTGAAGGAGATCTTTAATTCTTCTGAAAAGAAGCTTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

366

Amino Acids

41.32

Weight (kDa)

5.65

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	688
AciI	CCGC	1 cut(s)	508
AclI	AACGTT	1 cut(s)	160
AclWI	GGATC	2 cut(s)	67, 190
AcsI	RAATTY	1 cut(s)	641
AfaI	GTAC	2 cut(s)	466, 950
AfiI	CCNNNNNNNGG	2 cut(s)	608, 828
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	9 cut(s)	254, 784, 793, 849, 854, 885, 942, 1019, 1057
AluBI	AGCT	4 cut(s)	289, 547, 1000, 1087
AluI	AGCT	4 cut(s)	289, 547, 1000, 1087
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	67, 190
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	2 cut(s)	527, 959
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	2 cut(s)	41, 116
AsuII	TTCGAA	1 cut(s)	759
AsuNHI	GCTAGC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	514, 946
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	83, 648, 1001
BglII	AGATCT	1 cut(s)	1062
BisI	GCNGC	2 cut(s)	528, 960
BlsI	GCNGC	2 cut(s)	529, 961
Bme1390I	CCNGG	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	800
BmtI	GCTAGC	1 cut(s)	1004
BpmI	CTGGAG	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 828
Bse1I	ACTGG	2 cut(s)	558, 933
Bse3DI	GCAATG	3 cut(s)	427, 537, 720
BseGI	GGATG	3 cut(s)	624, 818, 889
BseLI	CCNNNNNNNGG	2 cut(s)	608, 828
BseMI	GCAATG	3 cut(s)	427, 537, 720
BseMII	CTCAG	2 cut(s)	141, 258
BseNI	ACTGG	2 cut(s)	558, 933
BseXI	GCAGC	2 cut(s)	514, 946
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	889
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	608, 828
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	59, 195, 871, 1062, 1090
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	140, 259
BspLI	GGNNCC	1 cut(s)	690
BspOI	GCTAGC	1 cut(s)	1004
BspPI	GGATC	2 cut(s)	67, 190
BspT104I	TTCGAA	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	3 cut(s)	427, 537, 720
BsrI	ACTGG	2 cut(s)	558, 933
BssMI	GATC	5 cut(s)	59, 195, 871, 1062, 1090
Bst4CI	ACNGT	2 cut(s)	382, 541
Bst6I	CTCTTC	2 cut(s)	759, 1040
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstBI	TTCGAA	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	549, 1002
BstDEI	CTNAG	4 cut(s)	127, 267, 290, 303
BstF5I	GGATG	3 cut(s)	624, 818, 889
BstKTI	GATC	5 cut(s)	62, 198, 874, 1065, 1093
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	5 cut(s)	59, 195, 871, 1062, 1090
BstMWI	GCNNNNNNNGC	4 cut(s)	507, 516, 965, 1010
BstNSI	RCATGY	2 cut(s)	456, 753
BstSCI	CCNGG	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	514, 946
BstX2I	RGATCY	2 cut(s)	59, 1062
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	59, 1062
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	624, 818, 889
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	549, 1002
CaiI	CAGNNNCTG	1 cut(s)	527
Csp6I	GTAC	2 cut(s)	465, 949
CviAII	CATG	3 cut(s)	453, 746, 750
CviJI	RGCY	9 cut(s)	15, 289, 371, 400, 490, 527, 547, 1000, 1087
CviKI_1	RGCY	9 cut(s)	15, 289, 371, 400, 490, 527, 547, 1000, 1087
CviQI	GTAC	2 cut(s)	465, 949
DdeI	CTNAG	4 cut(s)	127, 267, 290, 303
DpnI	GATC	5 cut(s)	61, 197, 873, 1064, 1092
DpnII	GATC	5 cut(s)	59, 195, 871, 1062, 1090
Eam1104I	CTCTTC	2 cut(s)	759, 1040
EarI	CTCTTC	2 cut(s)	759, 1040
Eco147I	AGGCCT	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	751
FaeI	CATG	3 cut(s)	456, 749, 753
FalI	AAGNNNNNCTT	2 cut(s)	1049, 1081
FatI	CATG	3 cut(s)	452, 745, 749
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	2 cut(s)	528, 960
FokI	GGATG	3 cut(s)	631, 805, 876
Fsp4HI	GCNGC	2 cut(s)	528, 960
FspBI	CTAG	3 cut(s)	83, 648, 1001
GluI	GCNGC	2 cut(s)	528, 960
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	3 cut(s)	456, 749, 753
HindIII	AAGCTT	2 cut(s)	545, 1085
HinfI	GANTC	3 cut(s)	71, 314, 914
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	2 cut(s)	41, 116
Hpy188I	TCNGA	4 cut(s)	68, 130, 268, 1078
Hpy188III	TCNNGA	4 cut(s)	284, 427, 594, 829
HpyAV	CCTTC	4 cut(s)	103, 683, 975, 1051
HpyCH4III	ACNGT	2 cut(s)	382, 541
HpyCH4IV	ACGT	2 cut(s)	141, 160
HpyCH4V	TGCA	5 cut(s)	530, 551, 749, 906, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	507, 516, 965, 1010
HpyF3I	CTNAG	4 cut(s)	127, 267, 290, 303
HpySE526I	ACGT	2 cut(s)	141, 160
Hsp92II	CATG	3 cut(s)	456, 749, 753
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	5 cut(s)	59, 195, 871, 1062, 1090
LmnI	GCTCC	2 cut(s)	136, 286
Lsp1109I	GCAGC	2 cut(s)	514, 946
MaeI	CTAG	3 cut(s)	83, 648, 1001
MaeII	ACGT	2 cut(s)	141, 160
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	61, 197, 873, 1064, 1092
MboI	GATC	5 cut(s)	59, 195, 871, 1062, 1090
MboII	GAAGA	6 cut(s)	266, 426, 773, 776, 1057, 1065
MfeI	CAATTG	3 cut(s)	603, 849, 1014
MflI	RGATCY	2 cut(s)	59, 1062
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	65, 308
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	9 cut(s)	4, 62, 352, 411, 517, 679, 729, 760, 978
Mph1103I	ATGCAT	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	779
MseI	TTAA	3 cut(s)	167, 638, 1068
MslI	CAYNNNNRTG	2 cut(s)	54, 323
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	800
MunI	CAATTG	3 cut(s)	603, 849, 1014
MwoI	GCNNNNNNNGC	4 cut(s)	507, 516, 965, 1010
NciI	CCSGG	1 cut(s)	800
NdeII	GATC	5 cut(s)	59, 195, 871, 1062, 1090
NheI	GCTAGC	1 cut(s)	1000
NlaIII	CATG	3 cut(s)	456, 749, 753
NlaIV	GGNNCC	1 cut(s)	690
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	2 cut(s)	456, 753
NspV	TTCGAA	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	400
PciI	ACATGT	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	1 cut(s)	914
PkrI	GCNGC	2 cut(s)	529, 961
PleI	GAGTC	2 cut(s)	65, 308
PpsI	GAGTC	2 cut(s)	65, 308
PscI	ACATGT	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	443
Psp1406I	AACGTT	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	690
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	2 cut(s)	59, 1062
RsaI	GTAC	2 cut(s)	466, 950
RsaNI	GTAC	2 cut(s)	465, 949
RseI	CAYNNNNRTG	2 cut(s)	54, 323
SaqAI	TTAA	3 cut(s)	167, 638, 1068
SatI	GCNGC	2 cut(s)	528, 960
Sau3AI	GATC	5 cut(s)	59, 195, 871, 1062, 1090
SchI	GAGTC	2 cut(s)	65, 308
ScrFI	CCNGG	1 cut(s)	800
SduI	GDGCHC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	759
SmiMI	CAYNNNNRTG	2 cut(s)	54, 323
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	1 cut(s)	508
SspI	AATATT	1 cut(s)	993
SspMI	CTAG	3 cut(s)	83, 648, 1001
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	798
TaaI	ACNGT	2 cut(s)	382, 541
TaiI	ACGT	2 cut(s)	144, 163
TaqI	TCGA	1 cut(s)	759
TatI	WGTACW	2 cut(s)	464, 948
TfiI	GAWTC	1 cut(s)	914
Tru1I	TTAA	3 cut(s)	167, 638, 1068
Tru9I	TTAA	3 cut(s)	167, 638, 1068
TscAI	CASTG	1 cut(s)	558
TseI	GCWGC	2 cut(s)	527, 959
TspDTI	ATGAA	4 cut(s)	171, 665, 848, 1053
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	2 cut(s)	456, 753
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	3 cut(s)	83, 648, 1001
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.