Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033912.1

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Forward (+)

15162 .. 17586

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033912.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggagaagtgggtgtcaatgccaaaggtggagcttcatgctcatctcaatggatctattagagactctactttactagaacttgcaagagatttgggtgagaagggtgttgtagttttctctgattttgagcatgttatacagaaagatgaccgttctttaaccgaagtgttcaagttgtttgacctgatccatattgttactactgaccaccaaatcatcacaagaatcaccaaagaagttattgaagattttgctgctgagaatgttgtgtatctggagctgagaacaactccgaagaaaaatgattccataggaatgagcaaacgctcttacttggatgctgtactggagggtataaaggctgtgagtacagttgatgttgattttaggcctcatgatgctgttgtcaggattcccaagaattctccacctatatatgatacatgtaatggaagtacaagaaaaaagatttacgtgagacttcttttgagcattgatcgtcggggaaccacagaggctgcaatggaaactgtgaatcttgcactggaaatgagagatttaggggtggttggtatcgatctttctgggaatccgattgtgggagattggagtacatatttgccagcattaaaatttgctagagagcagggtctttatataaccctgcattgcggagaggtgcctaatccaaaggaggtacaatcaatgctagattttctaccgcagaggattggccatgcctgttgctttgaagaagcagaatgggaaaagttaaaatcttcaagtattccggttgagatttgtttgacatccaacatcaggaccaatacaattccttcgcttgatattcatcattttgctgatctgtacagtgcaaagcatcctctagtcctctgcaccgatgattctggggtcttttctaccagcctttccaacgagtacaaccttgctgcttctgcatttggtcttggaaggagggaaatatttcagctaacaagaaatgcggtcgagtttatatttgctggtgatggagtgaagagagaattaaaggagatttttagttctgctgaacagaagctcgaccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

363

Amino Acids

40.75

Weight (kDa)

5.45

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AciI	CCGC	3 cut(s)	675, 725, 1007
AclWI	GGATC	2 cut(s)	61, 184
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	2 cut(s)	424, 635
AfaI	GTAC	7 cut(s)	348, 373, 460, 616, 702, 872, 944
AfiI	CCNNNNNNNGG	2 cut(s)	602, 822
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	175, 248, 755, 786
AluBI	AGCT	4 cut(s)	34, 283, 994, 1081
AluI	AGCT	4 cut(s)	34, 283, 994, 1081
Alw26I	GTCTC	2 cut(s)	57, 475
AlwI	GGATC	2 cut(s)	61, 184
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	392, 736
ApeKI	GCWGC	3 cut(s)	257, 521, 953
ApoI	RAATTY	2 cut(s)	424, 635
Asp700I	GAANNNNTTC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	110, 223, 1040
AvaII	GGWCC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	244, 508, 940
BccI	CCATC	1 cut(s)	1025
BcoDI	GTCTC	2 cut(s)	57, 475
BfaI	CTAG	4 cut(s)	77, 642, 713, 890
BisI	GCNGC	3 cut(s)	258, 522, 954
BlsI	GCNGC	3 cut(s)	259, 523, 955
Bme18I	GGWCC	1 cut(s)	825
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	511, 684
BmsI	GCATC	3 cut(s)	331, 391, 892
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	2 cut(s)	299, 371
Bsa29I	ATCGAT	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	852
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 822
Bse1I	ACTGG	2 cut(s)	354, 552
Bse3DI	GCAATG	2 cut(s)	531, 670
Bse8I	GATNNNNATC	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	579
BseGI	GGATG	3 cut(s)	346, 812, 883
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	2 cut(s)	602, 822
BseMI	GCAATG	2 cut(s)	531, 670
BseMII	CTCAG	2 cut(s)	252, 275
BseNI	ACTGG	2 cut(s)	354, 552
BseXI	GCAGC	3 cut(s)	244, 508, 940
BsgI	GTGCAG	1 cut(s)	883
Bsh1285I	CGRYCG	1 cut(s)	1011
BshFI	GGCC	2 cut(s)	394, 738
BshNI	GGYRCC	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	1011
BsiSI	CCGG	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	602, 822
BsmAI	GTCTC	2 cut(s)	57, 475
BsnI	GGCC	2 cut(s)	394, 738
Bsp1407I	TGTACA	1 cut(s)	870
Bsp143I	GATC	5 cut(s)	53, 189, 499, 580, 865
BspACI	CCGC	3 cut(s)	675, 725, 1007
BspANI	GGCC	2 cut(s)	394, 738
BspCNI	CTCAG	2 cut(s)	253, 276
BspDI	ATCGAT	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	511, 684
BspPI	GGATC	2 cut(s)	61, 184
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	531, 670
BsrGI	TGTACA	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	354, 552
BssMI	GATC	5 cut(s)	53, 189, 499, 580, 865
Bst4CI	ACNGT	4 cut(s)	155, 376, 535, 875
Bst6I	CTCTTC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	870
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	261, 284
BstF5I	GGATG	3 cut(s)	346, 812, 883
BstKTI	GATC	5 cut(s)	56, 192, 502, 583, 868
BstMAI	GTCTC	2 cut(s)	57, 475
BstMBI	GATC	5 cut(s)	53, 189, 499, 580, 865
BstMCI	CGRYCG	1 cut(s)	1011
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstNSI	RCATGY	2 cut(s)	137, 450
BstV1I	GCAGC	3 cut(s)	244, 508, 940
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	394, 738
BsuTUI	ATCGAT	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	346, 812, 883
BtsIMutI	CAGTG	2 cut(s)	545, 880
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	825
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
CviAII	CATG	5 cut(s)	38, 134, 398, 447, 740
CviJI	RGCY	9 cut(s)	34, 283, 365, 394, 521, 738, 930, 994, 1081
CviKI_1	RGCY	9 cut(s)	34, 283, 365, 394, 521, 738, 930, 994, 1081
CviQI	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
DdeI	CTNAG	2 cut(s)	261, 284
DpnI	GATC	5 cut(s)	55, 191, 501, 582, 867
DpnII	GATC	5 cut(s)	53, 189, 499, 580, 865
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Eco147I	AGGCCT	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	5 cut(s)	41, 137, 401, 450, 743
FatI	CATG	5 cut(s)	37, 133, 397, 446, 739
Fnu4HI	GCNGC	3 cut(s)	258, 522, 954
FokI	GGATG	3 cut(s)	353, 799, 870
Fsp4HI	GCNGC	3 cut(s)	258, 522, 954
FspBI	CTAG	4 cut(s)	77, 642, 713, 890
GluI	GCNGC	3 cut(s)	258, 522, 954
GsuI	CTGGAG	2 cut(s)	299, 371
HaeIII	GGCC	2 cut(s)	394, 738
HapII	CCGG	1 cut(s)	794
Hin1II	CATG	5 cut(s)	41, 137, 401, 450, 743
HinfI	GANTC	7 cut(s)	65, 228, 308, 415, 538, 592, 908
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	3 cut(s)	110, 223, 1040
Hpy188I	TCNGA	3 cut(s)	124, 297, 597
Hpy188III	TCNNGA	4 cut(s)	278, 398, 412, 823
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	97, 849, 969
HpyCH4III	ACNGT	4 cut(s)	155, 376, 535, 875
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	7 cut(s)	86, 524, 545, 670, 878, 900, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	2 cut(s)	261, 284
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	41, 137, 401, 450, 743
Kzo9I	GATC	5 cut(s)	53, 189, 499, 580, 865
LmnI	GCTCC	2 cut(s)	31, 280
Lsp1109I	GCAGC	3 cut(s)	244, 508, 940
LweI	GCATC	3 cut(s)	331, 391, 892
MaeI	CTAG	4 cut(s)	77, 642, 713, 890
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	55, 191, 501, 582, 867
MboI	GATC	5 cut(s)	53, 189, 499, 580, 865
MboII	GAAGA	5 cut(s)	260, 310, 767, 774, 1051
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	4 cut(s)	424, 635, 834, 1046
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	840, 960
MnlI	CCTC	9 cut(s)	346, 405, 511, 673, 691, 723, 897, 905, 972
Mox20I	TGGCCA	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	4 cut(s)	161, 632, 776, 1049
MslI	CAYNNNNRTG	2 cut(s)	48, 317
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	959
NdeII	GATC	5 cut(s)	53, 189, 499, 580, 865
NlaIII	CATG	5 cut(s)	41, 137, 401, 450, 743
NlaIV	GGNNCC	2 cut(s)	511, 684
NspI	RCATGY	2 cut(s)	137, 450
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	394
PciI	ACATGT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	6 cut(s)	228, 308, 415, 538, 592, 908
PkrI	GCNGC	3 cut(s)	259, 523, 955
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	511, 684
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	7 cut(s)	348, 373, 460, 616, 702, 872, 944
RsaNI	GTAC	7 cut(s)	347, 372, 459, 615, 701, 871, 943
RseI	CAYNNNNRTG	2 cut(s)	48, 317
SaqAI	TTAA	4 cut(s)	161, 632, 776, 1049
SatI	GCNGC	3 cut(s)	258, 522, 954
Sau3AI	GATC	5 cut(s)	53, 189, 499, 580, 865
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	3 cut(s)	331, 391, 892
SinI	GGWCC	1 cut(s)	825
SmiMI	CAYNNNNRTG	2 cut(s)	48, 317
Sse9I	AATT	4 cut(s)	424, 635, 834, 1046
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	3 cut(s)	675, 725, 1007
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	4 cut(s)	77, 642, 713, 890
StuI	AGGCCT	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	155, 376, 535, 875
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	579, 1011, 1083
TasI	AATT	4 cut(s)	424, 635, 834, 1046
TatI	WGTACW	6 cut(s)	346, 371, 458, 614, 870, 942
TfiI	GAWTC	6 cut(s)	228, 308, 415, 538, 592, 908
Tru1I	TTAA	4 cut(s)	161, 632, 776, 1049
Tru9I	TTAA	4 cut(s)	161, 632, 776, 1049
TscAI	CASTG	2 cut(s)	552, 880
TseI	GCWGC	3 cut(s)	257, 521, 953
TspDTI	ATGAA	2 cut(s)	26, 842
TspRI	CASTG	2 cut(s)	552, 880
VpaK11BI	GGWCC	1 cut(s)	825
XapI	RAATTY	2 cut(s)	424, 635
XceI	RCATGY	2 cut(s)	137, 450
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	4 cut(s)	77, 642, 713, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.