Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006806

Physical Location & Seq

Genomic Coordinates Reverse (-)

2664630 .. 2667653

Gene Structure 3024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTTATGTTTTTTCTCAAAGCAGGTGATTGAAGATTTTGCTGCTGAGAATGTTGTGTATCTGGAGCTAAGAACAACTCCAAAGAAAAATGATTCCATAGGAATGAGCAAACGCTCTTACTTGGAAGCAGTACTGGAGGGTTTAAAGGCTGTGAGTACAGTTGATGTTGATTTTAGGCCTCATGATGCTGTTGTCAGGATTCCCAAGAATTCTCCACCTATATATGTTACATGTAATGGAAGTACAAGAAAAAAGATTTACGTGAGACTTCTTTTGAGCATTGATCGTCGGGGAACCACAGAGGCTGCAATGGAAACTGTGAATCTTGCACTGGCAATGAGAGATTTAGGGGTGGTTGGTATTGATCTTTCTGGGAATCCGATTGTGGGAGATTGGAGTACATATTTGCCCGCATTAAAATTTGCTAGAGAGCAGGGTCTTTATATAACCCTGCATTGCGGAGAGGTGCCTAATCCAAAGGAGATACAATCAATGCTAGATTTTCTACCGCAGAGGATTGGCCATGCCTGTTGCTTTGAAGAAGAAGAATGGGAAAAGTTAAAATCTTCAGGTATTCCGGTTGAGATTTGTTTGACATCCAACATCAGGACCAATACAATTGCTTCGCTCGATATTCATCATTTTGCTGATCTGTATAGTGCAAAGCATCCTCTAGTCCTCTGCACTGATGATTCTGGGGTCTTTTCTACCAGCCTTTCAAATGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACAAGAAATGCGGTCGAGTTTATATTTGCTGGTGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCTGCTGAACAGAAGCTCGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

292

Amino Acids

32.44

Weight (kDa)

5.61

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	9 - 280	1.5e-37	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04880 AT4G04880 AT4G04880
fragaria_vesca	FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490 FvH4_3g02490
malus_domestica	MD10G1317700.v1.1
prunus_persica	Prupe.4G024100_v2.0.a1 Prupe.4G024100_v2.0.a1
pyrus_communis	pycom10g26900
rosa_chinensis	RchiOBHm_Chr5g0003721
rosa_laevigata	RLG00000031170
rosa_multiflora	Rmu_sc0000500.1_g000005 Rmu_sc0033912.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072240
rosa_rugosa	Rorug04G0406300 Rorug04G0406400
rosa_samantha	Rh5AG033400 Rh5BG031800 Rh5CG036100 Rh5DG032400
rosa_wichuraiana	Rw5G003080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	4 cut(s)	411, 459, 509, 791
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	208, 419
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	5 cut(s)	132, 157, 244, 400, 728
AfiI	CCNNNNNNNGG	2 cut(s)	386, 606
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	32, 539, 720
AluBI	AGCT	3 cut(s)	67, 778, 865
AluI	AGCT	3 cut(s)	67, 778, 865
Alw26I	GTCTC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	176, 520
ApeKI	GCWGC	3 cut(s)	41, 305, 737
ApoI	RAATTY	2 cut(s)	208, 419
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	37, 824
AvaII	GGWCC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	466
BbvI	GCAGC	3 cut(s)	28, 292, 724
BccI	CCATC	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	426, 497, 674
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	3 cut(s)	42, 306, 738
BlsI	GCNGC	3 cut(s)	43, 307, 739
BmcAI	AGTACT	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	2 cut(s)	295, 468
BmsI	GCATC	2 cut(s)	175, 676
BpmI	CTGGAG	2 cut(s)	83, 155
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 606
Bse1I	ACTGG	2 cut(s)	138, 336
Bse3DI	GCAATG	3 cut(s)	315, 342, 454
Bse8I	GATNNNNATC	1 cut(s)	636
BseGI	GGATG	2 cut(s)	596, 667
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	386, 606
BseMI	GCAATG	3 cut(s)	315, 342, 454
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	138, 336
BseXI	GCAGC	3 cut(s)	28, 292, 724
BsgI	GTGCAG	1 cut(s)	667
Bsh1285I	CGRYCG	1 cut(s)	795
BshFI	GGCC	2 cut(s)	178, 522
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	386, 606
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	178, 522
Bsp143I	GATC	3 cut(s)	283, 364, 649
BspACI	CCGC	4 cut(s)	411, 459, 509, 791
BspANI	GGCC	2 cut(s)	178, 522
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	295, 468
BspMI	ACCTGC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	466
BsrDI	GCAATG	3 cut(s)	315, 342, 454
BsrI	ACTGG	2 cut(s)	138, 336
BssMI	GATC	3 cut(s)	283, 364, 649
Bst4CI	ACNGT	2 cut(s)	160, 319
Bst6I	CTCTTC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	45, 68
BstF5I	GGATG	2 cut(s)	596, 667
BstKTI	GATC	3 cut(s)	286, 367, 652
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	283, 364, 649
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	28, 292, 724
BsuRI	GGCC	2 cut(s)	178, 522
BtsCI	GGATG	2 cut(s)	596, 667
BtsIMutI	CAGTG	2 cut(s)	329, 684
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	609
Csp6I	GTAC	5 cut(s)	131, 156, 243, 399, 727
CviAII	CATG	3 cut(s)	182, 231, 524
CviJI	RGCY	8 cut(s)	67, 149, 178, 305, 522, 714, 778, 865
CviKI_1	RGCY	8 cut(s)	67, 149, 178, 305, 522, 714, 778, 865
CviQI	GTAC	5 cut(s)	131, 156, 243, 399, 727
DdeI	CTNAG	2 cut(s)	45, 68
DpnI	GATC	3 cut(s)	285, 366, 651
DpnII	GATC	3 cut(s)	283, 364, 649
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
Eco147I	AGGCCT	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	208
FaeI	CATG	3 cut(s)	185, 234, 527
FatI	CATG	3 cut(s)	181, 230, 523
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	42, 306, 738
FokI	GGATG	2 cut(s)	583, 654
Fsp4HI	GCNGC	3 cut(s)	42, 306, 738
FspBI	CTAG	3 cut(s)	426, 497, 674
GluI	GCNGC	3 cut(s)	42, 306, 738
GsuI	CTGGAG	2 cut(s)	83, 155
HaeIII	GGCC	2 cut(s)	178, 522
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	3 cut(s)	185, 234, 527
HinfI	GANTC	5 cut(s)	92, 199, 322, 376, 692
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	37, 824
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	4 cut(s)	62, 182, 196, 607
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	753
HpyCH4III	ACNGT	2 cut(s)	160, 319
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	6 cut(s)	308, 329, 454, 662, 684, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	2 cut(s)	45, 68
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	185, 234, 527
Kzo9I	GATC	3 cut(s)	283, 364, 649
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	3 cut(s)	28, 292, 724
LweI	GCATC	2 cut(s)	175, 676
MaeI	CTAG	3 cut(s)	426, 497, 674
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	285, 366, 651
MboI	GATC	3 cut(s)	283, 364, 649
MboII	GAAGA	6 cut(s)	44, 551, 554, 557, 558, 835
MfeI	CAATTG	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	4 cut(s)	208, 419, 618, 830
MluNI	TGGCCA	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	130, 189, 295, 457, 507, 681, 689, 756
Mox20I	TGGCCA	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	4 cut(s)	143, 416, 560, 833
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	1 cut(s)	578
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeII	GATC	3 cut(s)	283, 364, 649
NlaIII	CATG	3 cut(s)	185, 234, 527
NlaIV	GGNNCC	2 cut(s)	295, 468
NspI	RCATGY	1 cut(s)	234
PagI	TCATGA	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	92, 199, 322, 376, 692
PkrI	GCNGC	3 cut(s)	43, 307, 739
Ppu21I	YACGTR	1 cut(s)	262
PscI	ACATGT	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	295, 468
PspPI	GGNCC	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	5 cut(s)	132, 157, 244, 400, 728
RsaNI	GTAC	5 cut(s)	131, 156, 243, 399, 727
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	143, 416, 560, 833
SatI	GCNGC	3 cut(s)	42, 306, 738
Sau3AI	GATC	3 cut(s)	283, 364, 649
Sau96I	GGNCC	1 cut(s)	609
ScaI	AGTACT	1 cut(s)	132
SetI	ASST	9 cut(s)	27, 69, 220, 264, 468, 574, 735, 780, 867
SfaNI	GCATC	2 cut(s)	175, 676
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	208, 419, 618, 830
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	411, 459, 509, 791
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	426, 497, 674
StuI	AGGCCT	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	160, 319
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	630, 795, 867
TasI	AATT	4 cut(s)	208, 419, 618, 830
TatI	WGTACW	5 cut(s)	130, 155, 242, 398, 726
TfiI	GAWTC	5 cut(s)	92, 199, 322, 376, 692
Tru1I	TTAA	4 cut(s)	143, 416, 560, 833
Tru9I	TTAA	4 cut(s)	143, 416, 560, 833
TscAI	CASTG	2 cut(s)	336, 691
TseI	GCWGC	3 cut(s)	41, 305, 737
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	336, 691
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	2 cut(s)	208, 419
XceI	RCATGY	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	3 cut(s)	426, 497, 674
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.