Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Reverse (-)

2720493 .. 2723214

Gene Structure 2722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGCAATTATGCAGCCGGACTCGGTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGTCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGTTTTGTCTGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCCTGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGAGTTTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTCAACAAAGAGTTCAGCTTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATCGCAGACGATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAAGAAGGGAACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAATCTAGGGAAGCAAAAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTGTATGATTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAACCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATTGGGAAATGGCTAAAATCGCATGATAACCCATTAATAGATGACAGTATCATTAACATTGTTGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATTAGAGCTAGAAATGGAATGGCTGCCACTTGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

336

Amino Acids

37.28

Weight (kDa)

4.96

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	16 - 131	1e-38	Putative GTPase activating protein for Arf
C2	PF00168	180 - 268	2.7e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 403
AclWI	GGATC	4 cut(s)	104, 596, 821, 834
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	2 cut(s)	623, 935
AcvI	CACGTG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	195, 254, 282, 547, 619, 667
AhdI	GACNNNNNGTC	1 cut(s)	592
AjnI	CCWGG	2 cut(s)	31, 319
AluBI	AGCT	6 cut(s)	293, 399, 440, 711, 949, 979
AluI	AGCT	6 cut(s)	293, 399, 440, 711, 949, 979
Alw21I	GWGCWC	2 cut(s)	171, 314
Alw26I	GTCTC	1 cut(s)	579
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	104, 596, 821, 834
AoxI	GGCC	1 cut(s)	715
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	14, 994
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	92, 104
AspS9I	GGNCC	2 cut(s)	323, 716
AsuC2I	CCSGG	2 cut(s)	415, 671
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	826
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbrPI	CACGTG	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	171, 314
BbvI	GCAGC	2 cut(s)	26, 981
BccI	CCATC	1 cut(s)	911
BciT130I	CCWGG	2 cut(s)	33, 321
BcnI	CCSGG	2 cut(s)	415, 671
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	4 cut(s)	215, 462, 623, 980
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	15, 995
BlsI	GCNGC	2 cut(s)	16, 996
Bme1390I	CCNGG	4 cut(s)	33, 321, 415, 671
Bme18I	GGWCC	1 cut(s)	323
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	323, 716
BmiI	GGNNCC	2 cut(s)	176, 828
BmrFI	CCNGG	4 cut(s)	33, 321, 415, 671
BmsI	GCATC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	415, 671
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	819
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	33, 321
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	410
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	2 cut(s)	51, 696
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	26, 981
BshFI	GGCC	1 cut(s)	717
BsiHKAI	GWGCWC	2 cut(s)	171, 314
BsiSI	CCGG	3 cut(s)	18, 414, 671
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	171, 314
Bsp143I	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
BspACI	CCGC	2 cut(s)	162, 403
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	2 cut(s)	50, 697
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	176, 828
BspPI	GGATC	4 cut(s)	104, 596, 821, 834
BsrDI	GCAATG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
Bst2UI	CCWGG	2 cut(s)	33, 321
Bst4CI	ACNGT	2 cut(s)	649, 899
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	37, 315, 574, 705
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	92, 104
BstKTI	GATC	6 cut(s)	61, 112, 471, 604, 829, 945
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	2 cut(s)	33, 321
BstSCI	CCNGG	4 cut(s)	31, 319, 413, 669
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	26, 981
BstX2I	RGATCY	2 cut(s)	58, 826
BstYI	RGATCY	2 cut(s)	58, 826
BsuRI	GGCC	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	401
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	92, 104
Cfr13I	GGNCC	2 cut(s)	323, 716
CseI	GACGC	1 cut(s)	258
CviAII	CATG	6 cut(s)	247, 338, 472, 589, 691, 875
DdeI	CTNAG	4 cut(s)	37, 315, 574, 705
DpnI	GATC	6 cut(s)	60, 111, 470, 603, 828, 944
DpnII	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
DraI	TTTAAA	1 cut(s)	66
DriI	GACNNNNNGTC	1 cut(s)	592
Eam1105I	GACNNNNNGTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	623, 935
Eco72I	CACGTG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	31, 319
FaeI	CATG	6 cut(s)	250, 341, 475, 592, 694, 878
FatI	CATG	6 cut(s)	246, 337, 471, 588, 690, 874
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	15, 995
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	15, 995
FspBI	CTAG	4 cut(s)	215, 462, 623, 980
GlaI	GCGC	2 cut(s)	91, 103
GluI	GCNGC	2 cut(s)	15, 995
GsuI	CTGGAG	1 cut(s)	987
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	3 cut(s)	18, 414, 671
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	92, 104
Hin1II	CATG	6 cut(s)	250, 341, 475, 592, 694, 878
Hin6I	GCGC	2 cut(s)	90, 102
HinP1I	GCGC	2 cut(s)	90, 102
HindIII	AAGCTT	3 cut(s)	291, 397, 947
HinfI	GANTC	8 cut(s)	21, 51, 84, 242, 354, 619, 679, 962
HpaII	CCGG	3 cut(s)	18, 414, 671
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	9 cut(s)	56, 109, 137, 229, 390, 584, 642, 942, 954
Hpy188III	TCNNGA	7 cut(s)	338, 462, 515, 683, 704, 830, 966
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	512, 541, 556
HpyCH4III	ACNGT	2 cut(s)	649, 899
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	6 cut(s)	14, 169, 379, 730, 812, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpyF3I	CTNAG	4 cut(s)	37, 315, 574, 705
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	6 cut(s)	250, 341, 475, 592, 694, 878
HspAI	GCGC	2 cut(s)	90, 102
Kzo9I	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	2 cut(s)	26, 981
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	4 cut(s)	215, 462, 623, 980
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	208, 550
MalI	GATC	6 cut(s)	60, 111, 470, 603, 828, 944
MboI	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
MflI	RGATCY	2 cut(s)	58, 826
MhlI	GDGCHC	2 cut(s)	171, 314
MluCI	AATT	8 cut(s)	7, 255, 277, 282, 490, 661, 725, 971
MlyI	GAGTC	3 cut(s)	15, 93, 971
MnlI	CCTC	4 cut(s)	188, 226, 254, 928
MseI	TTAA	6 cut(s)	65, 152, 333, 558, 887, 906
MspI	CCGG	3 cut(s)	18, 414, 671
MspR9I	CCNGG	4 cut(s)	33, 321, 415, 671
MvaI	CCWGG	2 cut(s)	33, 321
MwoI	GCNNNNNNNGC	1 cut(s)	871
NciI	CCSGG	2 cut(s)	415, 671
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
NlaIII	CATG	6 cut(s)	250, 341, 475, 592, 694, 878
NlaIV	GGNNCC	2 cut(s)	176, 828
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	208, 550
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	5 cut(s)	51, 242, 354, 619, 679
PfoI	TCCNGGA	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	16, 996
PleI	GAGTC	3 cut(s)	15, 92, 970
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
PpsI	GAGTC	3 cut(s)	15, 92, 970
Ppu21I	YACGTR	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	31, 319
PspCI	CACGTG	1 cut(s)	309
PspGI	CCWGG	2 cut(s)	31, 319
PspN4I	GGNNCC	2 cut(s)	176, 828
PspPI	GGNCC	2 cut(s)	323, 716
PsuI	RGATCY	2 cut(s)	58, 826
SaqAI	TTAA	6 cut(s)	65, 152, 333, 558, 887, 906
SatI	GCNGC	2 cut(s)	15, 995
Sau3AI	GATC	6 cut(s)	58, 109, 468, 601, 826, 942
Sau96I	GGNCC	2 cut(s)	323, 716
SchI	GAGTC	3 cut(s)	15, 93, 971
ScrFI	CCNGG	4 cut(s)	33, 321, 415, 671
SduI	GDGCHC	2 cut(s)	171, 314
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	8 cut(s)	7, 255, 277, 282, 490, 661, 725, 971
SsiI	CCGC	2 cut(s)	162, 403
SspMI	CTAG	4 cut(s)	215, 462, 623, 980
StyD4I	CCNGG	4 cut(s)	31, 319, 413, 669
TaaI	ACNGT	2 cut(s)	649, 899
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	240
TasI	AATT	8 cut(s)	7, 255, 277, 282, 490, 661, 725, 971
TfiI	GAWTC	5 cut(s)	51, 242, 354, 619, 679
Tru1I	TTAA	6 cut(s)	65, 152, 333, 558, 887, 906
Tru9I	TTAA	6 cut(s)	65, 152, 333, 558, 887, 906
TseFI	GTSAC	2 cut(s)	208, 550
TseI	GCWGC	2 cut(s)	14, 994
Tsp45I	GTSAC	2 cut(s)	208, 550
TspDTI	ATGAA	7 cut(s)	133, 234, 303, 346, 387, 483, 668
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	887
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	490
XbaI	TCTAGA	1 cut(s)	461
XspI	CTAG	4 cut(s)	215, 462, 623, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.