Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Forward (+)

12400409 .. 12403846

Gene Structure 3438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATCACCGTCCAATGGAACTTGGGAGGCCTGCCTCAGGTAAAAGAAAGTTAAAGGATTTATTGCTGCAAAAAGATAATCGCGCTTGTGCTGATTGTGGTGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGCGTGCACAGGAGTCTTGGTACACACATATCAAAGGTTTTGTCTGTGACACTGGATGAATGGTCCGATGATGAAATTGATGCTATGATGGAAGTTGGAGGGAATTCATCTGCTAACTCGATCTATGAGGCTTTTCTTCCAGAAGGATATTCAAAGCCTGGACCAGATGCTGGTCACGAGGAACGTTCAAAGTTCATCCGTTCAAAGTATGAGCTTCAAGAATTTCTGAAACCTAGCTTGCGGATTAACTCAGCAAATAAAAGTCAAGAAACTCCAAAGATCTCTGTCCAAACAAGTTTTTCTAGAAAGATTATGGATAGTTTTCGGTCAAATTCTTCAAAGCCAGCGGACGGTATGGTAGAGTTCATTGGATTATTGAAGGTAAAGGTGCTTAAAGGGACAAATTTAGCTATCAGAGATATGATGACAAGTGACCCTTATGTCATCCTTACTCTTGGGCGTCAGACTCTTCAGACAACTGTAGTAAAGAGTAACTTGAATCCAGTCTGGAATGAGGAGCTCATGTTGTCTGTTCCTCAGCGATATGGACCTTTACAGTTGCGAGTGTTTGATCACGACATGTTCTCGGCCGATGACATAATGGGAGAAGCAGAGATTGATCTTCAGCCCTTGATAACATCTGCAATGGCGTTTGGGGATGCAGGAATGTTCGGGGATATGCAAATCGGAAAATGGCTGAAGTCAAATGACAACGCCCTCCTAGACGATAGCACTGTCAACATCGTTGATGGGAAGGTAAAACAGGCGGTGTCCCTCAAGCTCCAGAATGTGGAATGTGGAGAACTAGATTTAGAACTAGAGTGGATGCCTCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

335

Amino Acids

37.07

Weight (kDa)

5.31

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	16 - 131	1.6e-38	Putative GTPase activating protein for Arf
C2	PF00168	178 - 266	3e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AccB7I	CCANNNNNTGG	2 cut(s)	332, 952
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	403, 509, 929
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	4 cut(s)	265, 383, 493, 565
AcuI	CTGAAG	3 cut(s)	617, 770, 881
AcyI	GRCGYC	2 cut(s)	122, 622
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	5 cut(s)	16, 38, 332, 512, 952
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	315, 351, 366, 380, 501, 541, 661
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	376, 399, 572, 682, 943
AluI	AGCT	5 cut(s)	376, 399, 572, 682, 943
Alw21I	GWGCWC	2 cut(s)	171, 684
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	29, 750
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	67, 104
ApoI	RAATTY	4 cut(s)	265, 383, 493, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	225, 323, 710
AvaII	GGWCC	3 cut(s)	225, 323, 710
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	171, 684
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	54, 91
BccI	CCATC	2 cut(s)	244, 905
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	733
BfaI	CTAG	5 cut(s)	396, 465, 884, 968, 980
BfmI	CTRYAG	2 cut(s)	105, 642
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	2 cut(s)	68, 105
BlsI	GCNGC	2 cut(s)	69, 106
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	3 cut(s)	225, 323, 710
BmgT120I	GGNCC	3 cut(s)	225, 323, 710
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	232, 319, 811, 978
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	923
BsaHI	GRCGYC	2 cut(s)	122, 622
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 671, 701
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 38, 332, 512, 952
Bse1I	ACTGG	2 cut(s)	219, 665
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	5 cut(s)	223, 357, 606, 826, 993
BseLI	CCNNNNNNNGG	5 cut(s)	16, 38, 332, 512, 952
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	51, 426, 713
BseNI	ACTGG	2 cut(s)	219, 665
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	171
BseX3I	CGGCCG	1 cut(s)	750
BseXI	GCAGC	2 cut(s)	54, 91
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	31, 752
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	2 cut(s)	171, 684
BslFI	GGGAC	2 cut(s)	574, 919
BslI	CCNNNNNNNGG	5 cut(s)	16, 38, 332, 512, 952
BsmFI	GGGAC	2 cut(s)	574, 919
BsnI	GGCC	2 cut(s)	31, 752
Bsp1286I	GDGCHC	2 cut(s)	171, 684
Bsp143I	GATC	5 cut(s)	109, 282, 441, 733, 781
BspACI	CCGC	3 cut(s)	403, 509, 929
BspANI	GGCC	2 cut(s)	31, 752
BspCNI	CTCAG	3 cut(s)	50, 425, 712
BspFNI	CGCG	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	219, 665
BssMI	GATC	5 cut(s)	109, 282, 441, 733, 781
BssNI	GRCGYC	2 cut(s)	122, 622
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	5 cut(s)	11, 515, 643, 720, 898
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	2 cut(s)	122, 622
BstC8I	GCNNGC	4 cut(s)	33, 167, 401, 507
BstDEI	CTNAG	3 cut(s)	37, 412, 699
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	5 cut(s)	223, 357, 606, 826, 993
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	5 cut(s)	112, 285, 444, 736, 784
BstMBI	GATC	5 cut(s)	109, 282, 441, 733, 781
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	1 cut(s)	997
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	2 cut(s)	105, 642
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	54, 91
BstX2I	RGATCY	2 cut(s)	109, 441
BstYI	RGATCY	2 cut(s)	109, 441
BstZI	CGGCCG	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	31, 752
BtsCI	GGATG	5 cut(s)	223, 357, 606, 826, 993
BtsIMutI	CAGTG	2 cut(s)	212, 894
Cac8I	GCNNGC	4 cut(s)	33, 167, 401, 507
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	225, 323, 710
CseI	GACGC	2 cut(s)	111, 611
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	685, 742
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	37, 412, 699
DpnI	GATC	5 cut(s)	111, 284, 443, 735, 783
DpnII	GATC	5 cut(s)	109, 282, 441, 733, 781
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	750
EagI	CGGCCG	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	682
EclXI	CGGCCG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	684
Eco47I	GGWCC	3 cut(s)	225, 323, 710
Eco52I	CGGCCG	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	3 cut(s)	617, 770, 881
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	682
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	2 cut(s)	688, 745
FalI	AAGNNNNNCTT	4 cut(s)	583, 615, 641, 673
FaqI	GGGAC	2 cut(s)	574, 919
FatI	CATG	2 cut(s)	684, 741
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	2 cut(s)	68, 105
FokI	GGATG	5 cut(s)	230, 344, 593, 833, 1000
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	68, 105
FspBI	CTAG	5 cut(s)	396, 465, 884, 968, 980
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	68, 105
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	2 cut(s)	31, 752
HgaI	GACGC	2 cut(s)	111, 611
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	2 cut(s)	122, 622
Hin1II	CATG	2 cut(s)	688, 745
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HinfI	GANTC	4 cut(s)	4, 175, 628, 661
Hpy166II	GTNNAC	3 cut(s)	169, 185, 901
Hpy188I	TCNGA	6 cut(s)	229, 390, 578, 627, 636, 851
Hpy188III	TCNNGA	9 cut(s)	302, 338, 380, 428, 465, 670, 737, 946, 995
Hpy8I	GTNNAC	3 cut(s)	169, 185, 901
HpyAV	CCTTC	3 cut(s)	299, 535, 910
HpyCH4III	ACNGT	5 cut(s)	11, 515, 643, 720, 898
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	70, 107, 169, 806, 824, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	997
HpyF3I	CTNAG	3 cut(s)	37, 412, 699
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	122, 622
Hsp92II	CATG	2 cut(s)	688, 745
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	5 cut(s)	109, 282, 441, 733, 781
LmnI	GCTCC	2 cut(s)	679, 948
Lsp1109I	GCAGC	2 cut(s)	54, 91
LweI	GCATC	4 cut(s)	232, 319, 811, 978
MaeI	CTAG	5 cut(s)	396, 465, 884, 968, 980
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	4 cut(s)	208, 335, 593, 653
MalI	GATC	5 cut(s)	111, 284, 443, 735, 783
MboI	GATC	5 cut(s)	109, 282, 441, 733, 781
MboII	GAAGA	4 cut(s)	290, 489, 623, 776
MflI	RGATCY	2 cut(s)	109, 441
MhlI	GDGCHC	2 cut(s)	171, 684
MluCI	AATT	5 cut(s)	237, 265, 383, 493, 565
MlyI	GAGTC	2 cut(s)	184, 622
MmeI	TCCRAC	1 cut(s)	238
MseI	TTAA	4 cut(s)	53, 152, 408, 555
MspA1I	CMGCKG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	997
NdeII	GATC	5 cut(s)	109, 282, 441, 733, 781
NlaIII	CATG	2 cut(s)	688, 745
NmeAIII	GCCGAG	1 cut(s)	728
NmuCI	GTSAC	3 cut(s)	208, 335, 593
NspI	RCATGY	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	31
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	4, 661
PflMI	CCANNNNNTGG	2 cut(s)	332, 952
PkrI	GCNGC	2 cut(s)	69, 106
PleI	GAGTC	2 cut(s)	183, 622
PpsI	GAGTC	2 cut(s)	183, 622
PscI	ACATGT	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	225, 323, 710
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	109, 441
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	4 cut(s)	53, 152, 408, 555
SatI	GCNGC	2 cut(s)	68, 105
Sau3AI	GATC	5 cut(s)	109, 282, 441, 733, 781
Sau96I	GGNCC	3 cut(s)	225, 323, 710
SchI	GAGTC	2 cut(s)	184, 622
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	171, 684
SfaNI	GCATC	4 cut(s)	232, 319, 811, 978
SfcI	CTRYAG	2 cut(s)	105, 642
SinI	GGWCC	3 cut(s)	225, 323, 710
SmlI	CTYRAG	2 cut(s)	938, 995
SmoI	CTYRAG	2 cut(s)	938, 995
Sse9I	AATT	5 cut(s)	237, 265, 383, 493, 565
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	403, 509, 929
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	5 cut(s)	396, 465, 884, 968, 980
SstI	GAGCTC	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	5 cut(s)	11, 515, 643, 720, 898
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	281
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	237, 265, 383, 493, 565
TfiI	GAWTC	2 cut(s)	4, 661
Tru1I	TTAA	4 cut(s)	53, 152, 408, 555
Tru9I	TTAA	4 cut(s)	53, 152, 408, 555
TscAI	CASTG	2 cut(s)	219, 901
TseFI	GTSAC	3 cut(s)	208, 335, 593
TseI	GCWGC	2 cut(s)	67, 104
Tsp45I	GTSAC	3 cut(s)	208, 335, 593
TspDTI	ATGAA	6 cut(s)	17, 234, 249, 258, 346, 517
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	219, 901
Van91I	CCANNNNNTGG	2 cut(s)	332, 952
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	225, 323, 710
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	4 cut(s)	265, 383, 493, 565
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	1 cut(s)	745
XspI	CTAG	5 cut(s)	396, 465, 884, 968, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.