Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Forward (+)

5880172 .. 5884823

Gene Structure 4652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10101.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGTAGAAACATGAATCATCGTCCAATGGAACTGGGGAGGCCTGCCTCAGGTAAAAGAAAGTTGAAGGATTTATTGCTGCAAAAAGATAATCGCACTTGTGCTGATTGTGGTGCTGCTGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCCTAAAATGTTGTGGCGTGCACAGGAGTCTTGGTACACACATCTCAAAGGTTTTGTCTGTGACACTGGATGAATGGTCTGATGATGAAATCGAGGCTATGACTGAAGTTGGAGGGAATTCTTCTGCTAACTCAATCTACGAGGCTTTTCTTCCAGAAGGATATTCAAAGCCTGGACCAGATGCTGGTCACGAGGAACGTTCAAAGTTCATCCGGTCAAAGTATGAGCTTCAAGAATTTCTGAAACCTAGCTTGCGGATTAACTCAGCAAGTAAACCTCAAGAAACTCCAAAGATCTCTGTTCAAACAAGCTTTTCTAGAAAGATTATGGATAGTTTTCGTTCAAATTCTTCAAAGCCTACGGACGGTATGGTAGAGTTCATTGGATTATTGAAGGTAAAGGTGATTAAAGGGACGAATTTAGCTATCAGAGATATGATGACAAGTGACCCTTATGTCATCCTTACTCTTGGACGTCAGACTCTTCAGACAACTGTAGTAAAGAGTAACTTGAATCCGGTCTGGAATGAGGAGCTCATGTTGTCTGTTCCCCAGCGATATGGACCTTTACAGTTGCGAGTGTTTGATCATGACTTGTTCTCGGCCGATGACATAATGGGAGAAGCAGAGATTGATCTTCAGCCCTTGATAACATCTGCAATGGCGTTTGGGGATGCAGGAATGTTTGGGAACATGCAAATCGGAAAATGGCTGAAGTCACATGACAATGCCCTCCTAGACGATAGCACTGTCAACATTGTTGATGGTAAGGTAAGACAGGCGGTGTCCCTCAAGCTCCAGAATGTGGAATGTGGAGAACTAGATTTAGAACTAGAGTGGATGCCTCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

339

Amino Acids

37.61

Weight (kDa)

5.64

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	20 - 135	7.7e-39	Putative GTPase activating protein for Arf
C2	PF00168	182 - 270	4.1e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AatII	GACGTC	1 cut(s)	637
AccB7I	CCANNNNNTGG	2 cut(s)	344, 964
AciI	CCGC	2 cut(s)	415, 941
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	4 cut(s)	277, 395, 505, 577
AcuI	CTGAAG	4 cut(s)	285, 629, 782, 893
AcyI	GRCGYC	2 cut(s)	134, 634
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	4 cut(s)	50, 344, 524, 964
AgsI	TTSAA	9 cut(s)	67, 327, 363, 392, 464, 504, 513, 553, 673
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	388, 411, 471, 584, 694, 955
AluI	AGCT	6 cut(s)	388, 411, 471, 584, 694, 955
Alw21I	GWGCWC	2 cut(s)	183, 696
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	41, 762
ApaLI	GTGCAC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	79, 116
ApoI	RAATTY	4 cut(s)	277, 395, 505, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspS9I	GGNCC	2 cut(s)	335, 722
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	335, 722
AxyI	CCTNAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	183, 696
BbvI	GCAGC	2 cut(s)	66, 103
BccI	CCATC	1 cut(s)	917
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	745
BfaI	CTAG	5 cut(s)	408, 477, 896, 980, 992
BfmI	CTRYAG	1 cut(s)	654
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	2 cut(s)	80, 117
BlsI	GCNGC	2 cut(s)	81, 118
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	335, 722
BmgT120I	GGNCC	2 cut(s)	335, 722
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	3 cut(s)	331, 823, 990
BmuI	ACTGGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	941
BpuEI	CTTGAG	2 cut(s)	423, 935
BsaHI	GRCGYC	2 cut(s)	134, 634
BsaWI	WCCGGW	2 cut(s)	372, 676
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 683, 713
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 344, 524, 964
Bse1I	ACTGG	2 cut(s)	39, 231
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	50, 344, 524, 964
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	2 cut(s)	63, 438
BseNI	ACTGG	2 cut(s)	39, 231
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	183
BseX3I	CGGCCG	1 cut(s)	762
BseXI	GCAGC	2 cut(s)	66, 103
BseYI	CCCAGC	1 cut(s)	711
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	2 cut(s)	43, 764
BsiEI	CGRYCG	1 cut(s)	765
BsiHKAI	GWGCWC	2 cut(s)	183, 696
BsiSI	CCGG	2 cut(s)	373, 677
BslFI	GGGAC	2 cut(s)	586, 931
BslI	CCNNNNNNNGG	4 cut(s)	50, 344, 524, 964
BsmFI	GGGAC	2 cut(s)	586, 931
BsnI	GGCC	2 cut(s)	43, 764
Bsp1286I	GDGCHC	2 cut(s)	183, 696
Bsp143I	GATC	4 cut(s)	121, 453, 745, 793
BspACI	CCGC	2 cut(s)	415, 941
BspANI	GGCC	2 cut(s)	43, 764
BspCNI	CTCAG	2 cut(s)	62, 437
BspHI	TCATGA	1 cut(s)	748
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	2 cut(s)	39, 231
BssMI	GATC	4 cut(s)	121, 453, 745, 793
BssNI	GRCGYC	2 cut(s)	134, 634
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	527, 655, 732, 910
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	2 cut(s)	134, 634
BstC8I	GCNNGC	3 cut(s)	45, 179, 413
BstDEI	CTNAG	2 cut(s)	49, 424
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BstKTI	GATC	4 cut(s)	124, 456, 748, 796
BstMBI	GATC	4 cut(s)	121, 453, 745, 793
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	1 cut(s)	1009
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	66, 103
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	453
BstZI	CGGCCG	1 cut(s)	762
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	43, 764
BtsCI	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BtsIMutI	CAGTG	2 cut(s)	224, 906
Cac8I	GCNNGC	3 cut(s)	45, 179, 413
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	748
Cfr13I	GGNCC	2 cut(s)	335, 722
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	5 cut(s)	13, 697, 749, 853, 881
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	49, 424
DpnI	GATC	4 cut(s)	123, 455, 747, 795
DpnII	GATC	4 cut(s)	121, 453, 745, 793
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	762
EagI	CGGCCG	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	694
EclXI	CGGCCG	1 cut(s)	762
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	2 cut(s)	335, 722
Eco52I	CGGCCG	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	4 cut(s)	285, 629, 782, 893
Eco81I	CCTNAGG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	5 cut(s)	16, 700, 752, 856, 884
FalI	AAGNNNNNCTT	4 cut(s)	595, 627, 653, 685
FaqI	GGGAC	2 cut(s)	586, 931
FatI	CATG	5 cut(s)	12, 696, 748, 852, 880
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	80, 117
FokI	GGATG	5 cut(s)	242, 356, 605, 845, 1012
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	80, 117
FspBI	CTAG	5 cut(s)	408, 477, 896, 980, 992
GluI	GCNGC	2 cut(s)	80, 117
GsaI	CCCAGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	2 cut(s)	43, 764
HapII	CCGG	2 cut(s)	373, 677
HgaI	GACGC	1 cut(s)	123
Hin1I	GRCGYC	2 cut(s)	134, 634
Hin1II	CATG	5 cut(s)	16, 700, 752, 856, 884
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	4 cut(s)	16, 187, 640, 673
HpaII	CCGG	2 cut(s)	373, 677
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	181, 197, 434, 913
Hpy188I	TCNGA	6 cut(s)	241, 402, 590, 639, 648, 863
Hpy188III	TCNNGA	9 cut(s)	314, 350, 392, 440, 477, 682, 749, 958, 1007
Hpy8I	GTNNAC	4 cut(s)	181, 197, 434, 913
HpyAV	CCTTC	3 cut(s)	61, 311, 547
HpyCH4III	ACNGT	4 cut(s)	527, 655, 732, 910
HpyCH4IV	ACGT	2 cut(s)	358, 634
HpyCH4V	TGCA	5 cut(s)	82, 181, 818, 836, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1009
HpyF3I	CTNAG	2 cut(s)	49, 424
HpySE526I	ACGT	2 cut(s)	358, 634
Hsp92I	GRCGYC	2 cut(s)	134, 634
Hsp92II	CATG	5 cut(s)	16, 700, 752, 856, 884
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	121, 453, 745, 793
LmnI	GCTCC	2 cut(s)	691, 960
Lsp1109I	GCAGC	2 cut(s)	66, 103
LweI	GCATC	3 cut(s)	331, 823, 990
MaeI	CTAG	5 cut(s)	408, 477, 896, 980, 992
MaeII	ACGT	2 cut(s)	358, 634
MaeIII	GTNAC	5 cut(s)	220, 347, 605, 665, 876
MalI	GATC	4 cut(s)	123, 455, 747, 795
MboI	GATC	4 cut(s)	121, 453, 745, 793
MboII	GAAGA	5 cut(s)	273, 302, 501, 635, 788
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	183, 696
MluCI	AATT	4 cut(s)	277, 395, 505, 577
MlyI	GAGTC	2 cut(s)	196, 634
MmeI	TCCRAC	1 cut(s)	250
MseI	TTAA	2 cut(s)	420, 567
MslI	CAYNNNNRTG	1 cut(s)	885
MspI	CCGG	2 cut(s)	373, 677
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	1009
NdeII	GATC	4 cut(s)	121, 453, 745, 793
NlaIII	CATG	5 cut(s)	16, 700, 752, 856, 884
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	4 cut(s)	220, 347, 605, 876
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	16, 673
PflMI	CCANNNNNTGG	2 cut(s)	344, 964
PkrI	GCNGC	2 cut(s)	81, 118
PleI	GAGTC	2 cut(s)	195, 634
PpsI	GAGTC	2 cut(s)	195, 634
Psp124BI	GAGCTC	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	335, 722
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	420, 567
SatI	GCNGC	2 cut(s)	80, 117
Sau3AI	GATC	4 cut(s)	121, 453, 745, 793
Sau96I	GGNCC	2 cut(s)	335, 722
SchI	GAGTC	2 cut(s)	196, 634
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	183, 696
SfaNI	GCATC	3 cut(s)	331, 823, 990
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	2 cut(s)	335, 722
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	3 cut(s)	438, 950, 1007
SmoI	CTYRAG	3 cut(s)	438, 950, 1007
Sse9I	AATT	4 cut(s)	277, 395, 505, 577
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	415, 941
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	5 cut(s)	408, 477, 896, 980, 992
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	527, 655, 732, 910
TaiI	ACGT	2 cut(s)	361, 637
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	277, 395, 505, 577
TfiI	GAWTC	2 cut(s)	16, 673
Tru1I	TTAA	2 cut(s)	420, 567
Tru9I	TTAA	2 cut(s)	420, 567
TscAI	CASTG	2 cut(s)	231, 913
TseFI	GTSAC	4 cut(s)	220, 347, 605, 876
TseI	GCWGC	2 cut(s)	79, 116
Tsp45I	GTSAC	4 cut(s)	220, 347, 605, 876
TspDTI	ATGAA	5 cut(s)	29, 246, 261, 358, 529
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	231, 913
Van91I	CCANNNNNTGG	2 cut(s)	344, 964
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	335, 722
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	4 cut(s)	277, 395, 505, 577
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	856
XspI	CTAG	5 cut(s)	408, 477, 896, 980, 992
ZraI	GACGTC	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.