Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Forward (+)

11284076 .. 11286767

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGTTATTCTGGAGCCGGACTCGGAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTGGAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAAAGGTCTTATCCGTGACATTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAATTGGAGGAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTAAGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGCACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGCATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTGTGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAGTGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCCAGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGATTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTGCAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGAACTAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

337

Amino Acids

37.14

Weight (kDa)

5.12

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	16 - 131	1.4e-38	Putative GTPase activating protein for Arf
C2	PF00168	181 - 269	3.2e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	2 cut(s)	403, 512
AclWI	GGATC	4 cut(s)	66, 104, 413, 599
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	324, 938
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	430, 571
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	6 cut(s)	254, 282, 521, 550, 944, 965
AjnI	CCWGG	2 cut(s)	31, 319
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	6 cut(s)	128, 312, 399, 483, 782, 952
AluI	AGCT	6 cut(s)	128, 312, 399, 483, 782, 952
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	822
AlwI	GGATC	4 cut(s)	66, 104, 413, 599
AlwNI	CAGNNNCTG	1 cut(s)	802
AoxI	GGCC	1 cut(s)	579
ApoI	RAATTY	1 cut(s)	277
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	2 cut(s)	92, 104
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	565, 983
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	2 cut(s)	590, 914
BciT130I	CCWGG	2 cut(s)	33, 321
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	5 cut(s)	333, 426, 626, 977, 983
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	2 cut(s)	33, 321
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	16, 571
BmrFI	CCNGG	2 cut(s)	33, 321
BmsI	GCATC	2 cut(s)	319, 912
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	3 cut(s)	33, 90, 423
Bpu10I	CCTNAGC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	791
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	822, 912
Bse8I	GATNNNNATC	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	33, 321
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	223, 410, 582
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	2 cut(s)	822, 912
BseMII	CTCAG	3 cut(s)	51, 735, 774
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	822
Bsp1286I	GDGCHC	2 cut(s)	378, 425
Bsp143I	GATC	4 cut(s)	58, 109, 405, 604
BspACI	CCGC	2 cut(s)	403, 512
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	3 cut(s)	50, 734, 775
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	16, 571
BspPI	GGATC	4 cut(s)	66, 104, 413, 599
BspQI	GCTCTTC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	2 cut(s)	822, 912
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	4 cut(s)	58, 109, 405, 604
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	33, 321
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	653
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	5 cut(s)	37, 114, 315, 721, 783
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	223, 410, 582
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	92, 104
BstKTI	GATC	4 cut(s)	61, 112, 408, 607
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	4 cut(s)	58, 109, 405, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 874
BstNI	CCWGG	2 cut(s)	33, 321
BstSCI	CCNGG	2 cut(s)	31, 319
BstSFI	CTRYAG	1 cut(s)	651
BstX2I	RGATCY	2 cut(s)	58, 109
BstYI	RGATCY	2 cut(s)	58, 109
BsuRI	GGCC	1 cut(s)	581
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	223, 410, 582
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	92, 104
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	429, 570
CviAII	CATG	3 cut(s)	338, 526, 694
CviQI	GTAC	2 cut(s)	429, 570
DdeI	CTNAG	5 cut(s)	37, 114, 315, 721, 783
DpnI	GATC	4 cut(s)	60, 111, 407, 606
DpnII	GATC	4 cut(s)	58, 109, 405, 604
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	324, 938
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	31, 319
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	341, 529, 697
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FatI	CATG	3 cut(s)	337, 525, 693
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	3 cut(s)	230, 397, 569
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	5 cut(s)	333, 426, 626, 977, 983
GlaI	GCGC	2 cut(s)	91, 103
GluI	GCNGC	1 cut(s)	512
GsuI	CTGGAG	3 cut(s)	33, 90, 423
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	92, 104
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	341, 529, 697
Hin6I	GCGC	2 cut(s)	90, 102
HinP1I	GCGC	2 cut(s)	90, 102
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HindIII	AAGCTT	2 cut(s)	397, 950
HinfI	GANTC	7 cut(s)	21, 84, 242, 436, 457, 622, 965
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	565, 983
Hpy166II	GTNNAC	3 cut(s)	169, 621, 974
Hpy188I	TCNGA	7 cut(s)	26, 76, 229, 390, 587, 804, 957
Hpy188III	TCNNGA	6 cut(s)	12, 107, 302, 338, 679, 1004
Hpy8I	GTNNAC	3 cut(s)	169, 621, 974
HpyAV	CCTTC	4 cut(s)	299, 515, 544, 631
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4V	TGCA	5 cut(s)	275, 733, 815, 853, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 874
HpyF3I	CTNAG	5 cut(s)	37, 114, 315, 721, 783
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	341, 529, 697
HspAI	GCGC	2 cut(s)	90, 102
KpnI	GGTACC	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	58, 109, 405, 604
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	2 cut(s)	14, 109
LweI	GCATC	2 cut(s)	319, 912
MaeI	CTAG	5 cut(s)	333, 426, 626, 977, 983
MaeIII	GTNAC	2 cut(s)	208, 553
MalI	GATC	4 cut(s)	60, 111, 407, 606
MboI	GATC	4 cut(s)	58, 109, 405, 604
MboII	GAAGA	3 cut(s)	245, 670, 908
MflI	RGATCY	2 cut(s)	58, 109
MhlI	GDGCHC	2 cut(s)	378, 425
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	5 cut(s)	255, 277, 282, 493, 728
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	5 cut(s)	15, 93, 430, 466, 616
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	4 cut(s)	65, 152, 561, 668
MslI	CAYNNNNRTG	3 cut(s)	413, 714, 882
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	33, 321
MvaI	CCWGG	2 cut(s)	33, 321
MwoI	GCNNNNNNNGC	2 cut(s)	511, 874
NdeII	GATC	4 cut(s)	58, 109, 405, 604
NlaIII	CATG	3 cut(s)	341, 529, 697
NlaIV	GGNNCC	2 cut(s)	16, 571
NmuCI	GTSAC	2 cut(s)	208, 553
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	242, 965
PkrI	GCNGC	1 cut(s)	513
PleI	GAGTC	5 cut(s)	15, 92, 430, 465, 616
PpsI	GAGTC	5 cut(s)	15, 92, 430, 465, 616
Psp6I	CCWGG	2 cut(s)	31, 319
PspGI	CCWGG	2 cut(s)	31, 319
PspN4I	GGNNCC	2 cut(s)	16, 571
PspPI	GGNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	58, 109
RsaI	GTAC	2 cut(s)	430, 571
RsaNI	GTAC	2 cut(s)	429, 570
RseI	CAYNNNNRTG	3 cut(s)	413, 714, 882
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	4 cut(s)	65, 152, 561, 668
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	4 cut(s)	58, 109, 405, 604
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	5 cut(s)	15, 93, 430, 466, 616
ScrFI	CCNGG	2 cut(s)	33, 321
SduI	GDGCHC	2 cut(s)	378, 425
SfaNI	GCATC	2 cut(s)	319, 912
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	413, 714, 882
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	5 cut(s)	255, 277, 282, 493, 728
SsiI	CCGC	2 cut(s)	403, 512
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	5 cut(s)	333, 426, 626, 977, 983
StyD4I	CCNGG	2 cut(s)	31, 319
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	652
TaqI	TCGA	4 cut(s)	240, 245, 365, 455
TasI	AATT	5 cut(s)	255, 277, 282, 493, 728
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	2 cut(s)	242, 965
Tru1I	TTAA	4 cut(s)	65, 152, 561, 668
Tru9I	TTAA	4 cut(s)	65, 152, 561, 668
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	2 cut(s)	208, 553
Tsp45I	GTSAC	2 cut(s)	208, 553
TspDTI	ATGAA	5 cut(s)	234, 246, 346, 441, 486
TspGWI	ACGGA	2 cut(s)	196, 403
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 176
XspI	CTAG	5 cut(s)	333, 426, 626, 977, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.