Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Reverse (-)

26843859 .. 26847294

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25480.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATCACCGTCCTATGGAGCTTGGGAGGCCTGCCTCAGGTAAAAGAAGATTAAAAGATTTATTGATCCAAAAAGATAATCGCAATTGTGCTGATTGTGGTGCAACAGATCCTAAATGGGCGTCAGCAAACATCGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGGAGTCTTGGTACTCATATATCAAAGGTTTTGTCAGTGACCCTGGATGAATGGTCTGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAACTCTTCTGCAAATTCAATTTACGAGGCTTTTATTCCTGTGGGAGTTTCAAAGCCTGGACCAGATGCCGGTCATGAGGAACGTTCAAAATTCATCCGGTCAAAGTATGAGCTTCAAGATTTTCTGAAACCTAGCTTGCGAATTAACTCAGGTCCTTCTAGAAAGAACACTCTCCAGAGCACTCTCCAATCAAATAGTTTTTCTAGAAAGATTATCGATAGTTTCCGTTCAAATTCTTCACAGAAATCGCAGGAAGGCATGGTAGAATTTATTGGTTTATTGAAGGTAAAGGTGATTAGAGGCACAAATTTAGCTATTCGAGATATGATGACAAGGATCGATCCTTATGTCATCCTGACTCTTGGGCAGCAGACTCTTCGGACGACTGTAATAAAGAGTAACTTGAATCCTGTCTGGAATGAGGAGCTCATGCTGTCTGTACCTGAGCAATTTGGACCTTTGCAGTTGCAGGTGTTTGATTATGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATCTTCAGCCTCTGATAACATCTGCAATGGCGTTCGGGGATGCAGGAATGTTTGGCAACATGCAAATCGGAAAATGGCTGAAGTCGAATGACAATGCCCTCATAGACGATAGCACAGTTAATATTGTCGACGGGAAGGTAAAACAGGAGCTGTCTCTCAAGCTGCAGAATGTTGAGTGTGGAGAATTAGATTTAGAACTAGAGTGGATGCCCCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

338

Amino Acids

37.52

Weight (kDa)

5.22

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	918
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	4 cut(s)	61, 104, 599, 608
AcsI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
AcuI	CTGAAG	2 cut(s)	779, 890
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	184, 705
AfiI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	7 cut(s)	282, 315, 351, 380, 495, 547, 670
AjnI	CCWGG	2 cut(s)	213, 319
AluBI	AGCT	7 cut(s)	22, 376, 399, 578, 691, 940, 952
AluI	AGCT	7 cut(s)	22, 376, 399, 578, 691, 940, 952
Alw21I	GWGCWC	3 cut(s)	171, 446, 693
Alw26I	GTCTC	1 cut(s)	948
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	61, 104, 599, 608
AlwNI	CAGNNNCTG	2 cut(s)	802, 940
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	631, 952
ApoI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	323, 416, 719
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	3 cut(s)	323, 416, 719
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	693
Bbv12I	GWGCWC	3 cut(s)	171, 446, 693
BbvI	GCAGC	2 cut(s)	643, 939
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	2 cut(s)	215, 321
BcoDI	GTCTC	1 cut(s)	948
BfaI	CTAG	4 cut(s)	396, 423, 468, 989
BfmI	CTRYAG	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	2 cut(s)	632, 953
BlsI	GCNGC	2 cut(s)	633, 954
Bme1390I	CCNGG	2 cut(s)	215, 321
Bme18I	GGWCC	3 cut(s)	323, 416, 719
BmgT120I	GGNCC	3 cut(s)	323, 416, 719
BmrFI	CCNGG	2 cut(s)	215, 321
BmsI	GCATC	4 cut(s)	232, 319, 820, 987
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	932
Bsa29I	ATCGAT	2 cut(s)	480, 603
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 38, 332
Bse118I	RCCGGY	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	252, 822
BseBI	CCWGG	2 cut(s)	215, 321
BseCI	ATCGAT	2 cut(s)	480, 603
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	5 cut(s)	223, 357, 615, 835, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BseMI	GCAATG	2 cut(s)	252, 822
BseMII	CTCAG	3 cut(s)	51, 426, 699
BseRI	GAGGAG	1 cut(s)	701
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	643, 939
BshFI	GGCC	1 cut(s)	31
BshVI	ATCGAT	2 cut(s)	480, 603
BsiHKAI	GWGCWC	3 cut(s)	171, 446, 693
BsiSI	CCGG	2 cut(s)	333, 361
BslI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BsmAI	GTCTC	1 cut(s)	948
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	171, 446, 693
Bsp143I	GATC	5 cut(s)	66, 109, 600, 604, 790
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	50, 425, 700
BspDI	ATCGAT	2 cut(s)	480, 603
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	957
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	4 cut(s)	61, 104, 599, 608
BsrDI	GCAATG	2 cut(s)	252, 822
BsrFI	RCCGGY	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	66, 109, 600, 604, 790
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	215, 321
Bst4CI	ACNGT	3 cut(s)	11, 652, 907
Bst6I	CTCTTC	2 cut(s)	274, 645
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	33, 401
BstDEI	CTNAG	3 cut(s)	37, 412, 708
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	5 cut(s)	223, 357, 615, 835, 1002
BstKTI	GATC	5 cut(s)	69, 112, 603, 607, 793
BstMAI	GTCTC	1 cut(s)	948
BstMBI	GATC	5 cut(s)	66, 109, 600, 604, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 1006
BstNI	CCWGG	2 cut(s)	215, 321
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	213, 319
BstSFI	CTRYAG	1 cut(s)	953
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	643, 939
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	2 cut(s)	480, 603
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	2 cut(s)	480, 603
BtsCI	GGATG	5 cut(s)	223, 357, 615, 835, 1002
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	2 cut(s)	33, 401
CaiI	CAGNNNCTG	2 cut(s)	802, 940
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	323, 416, 719
ClaI	ATCGAT	2 cut(s)	480, 603
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	183, 704
CviAII	CATG	4 cut(s)	338, 523, 694, 850
CviQI	GTAC	2 cut(s)	183, 704
DdeI	CTNAG	3 cut(s)	37, 412, 708
DpnI	GATC	5 cut(s)	68, 111, 602, 606, 792
DpnII	GATC	5 cut(s)	66, 109, 600, 604, 790
Eam1104I	CTCTTC	2 cut(s)	274, 645
EarI	CTCTTC	2 cut(s)	274, 645
Ecl136II	GAGCTC	1 cut(s)	691
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	3 cut(s)	323, 416, 719
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	779, 890
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	213, 319
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	4 cut(s)	341, 526, 697, 853
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FatI	CATG	4 cut(s)	337, 522, 693, 849
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	2 cut(s)	632, 953
FokI	GGATG	5 cut(s)	230, 344, 602, 842, 1009
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	2 cut(s)	632, 953
FspBI	CTAG	4 cut(s)	396, 423, 468, 989
GluI	GCNGC	2 cut(s)	632, 953
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	333, 361
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	341, 526, 697, 853
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	5 cut(s)	4, 175, 622, 637, 670
HpaII	CCGG	2 cut(s)	333, 361
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	169, 919
Hpy188I	TCNGA	6 cut(s)	137, 229, 390, 645, 804, 860
Hpy188III	TCNNGA	8 cut(s)	338, 380, 423, 439, 468, 584, 619, 679
Hpy8I	GTNNAC	2 cut(s)	169, 919
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	4 cut(s)	429, 512, 541, 919
HpyCH4III	ACNGT	3 cut(s)	11, 652, 907
HpyCH4IV	ACGT	2 cut(s)	346, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 1006
HpyF3I	CTNAG	3 cut(s)	37, 412, 708
HpySE526I	ACGT	2 cut(s)	346, 752
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	341, 526, 697, 853
Kzo9I	GATC	5 cut(s)	66, 109, 600, 604, 790
LmnI	GCTCC	3 cut(s)	19, 688, 937
Lsp1109I	GCAGC	2 cut(s)	643, 939
LweI	GCATC	4 cut(s)	232, 319, 820, 987
MaeI	CTAG	4 cut(s)	396, 423, 468, 989
MaeII	ACGT	2 cut(s)	346, 752
MaeIII	GTNAC	2 cut(s)	208, 662
MalI	GATC	5 cut(s)	68, 111, 602, 606, 792
MboI	GATC	5 cut(s)	66, 109, 600, 604, 790
MboII	GAAGA	5 cut(s)	60, 261, 492, 632, 785
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	3 cut(s)	171, 446, 693
MlyI	GAGTC	3 cut(s)	184, 616, 631
MmeI	TCCRAC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	4 cut(s)	53, 152, 408, 909
MspI	CCGG	2 cut(s)	333, 361
MspR9I	CCNGG	2 cut(s)	215, 321
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	215, 321
MwoI	GCNNNNNNNGC	2 cut(s)	28, 1006
NdeII	GATC	5 cut(s)	66, 109, 600, 604, 790
NlaIII	CATG	4 cut(s)	341, 526, 697, 853
NmeAIII	GCCGAG	1 cut(s)	737
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	853
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 670
PkrI	GCNGC	2 cut(s)	633, 954
PleI	GAGTC	3 cut(s)	183, 616, 631
PpsI	GAGTC	3 cut(s)	183, 616, 631
PpuMI	RGGWCCY	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	693
Psp1406I	AACGTT	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	213, 319
PspGI	CCWGG	2 cut(s)	213, 319
PspPI	GGNCC	3 cut(s)	323, 416, 719
PspPPI	RGGWCCY	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	957
PstNI	CAGNNNCTG	2 cut(s)	802, 940
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	184, 705
RsaNI	GTAC	2 cut(s)	183, 704
SacI	GAGCTC	1 cut(s)	693
SalI	GTCGAC	1 cut(s)	917
SaqAI	TTAA	4 cut(s)	53, 152, 408, 909
SatI	GCNGC	2 cut(s)	632, 953
Sau3AI	GATC	5 cut(s)	66, 109, 600, 604, 790
Sau96I	GGNCC	3 cut(s)	323, 416, 719
SchI	GAGTC	3 cut(s)	184, 616, 631
ScrFI	CCNGG	2 cut(s)	215, 321
SduI	GDGCHC	3 cut(s)	171, 446, 693
SfaNI	GCATC	4 cut(s)	232, 319, 820, 987
SfcI	CTRYAG	1 cut(s)	953
SinI	GGWCC	3 cut(s)	323, 416, 719
SmlI	CTYRAG	2 cut(s)	947, 1004
SmoI	CTYRAG	2 cut(s)	947, 1004
SseBI	AGGCCT	1 cut(s)	31
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	4 cut(s)	396, 423, 468, 989
SstI	GAGCTC	1 cut(s)	693
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	213, 319
TaaI	ACNGT	3 cut(s)	11, 652, 907
TaiI	ACGT	2 cut(s)	349, 755
TaqI	TCGA	5 cut(s)	480, 583, 603, 875, 918
TfiI	GAWTC	2 cut(s)	4, 670
Tru1I	TTAA	4 cut(s)	53, 152, 408, 909
Tru9I	TTAA	4 cut(s)	53, 152, 408, 909
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	631, 952
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	17, 234, 249, 346
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	323, 416, 719
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
XbaI	TCTAGA	2 cut(s)	422, 467
XceI	RCATGY	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	918
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	4 cut(s)	396, 423, 468, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.