Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Reverse (-)

40801958 .. 40806377

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1273000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATCACCGTCCTATGGAGCTTGGGAGGCCTGCCTCAGGTAAAAGAAGATTAAAAGATTTATTGATCCAAAAAGATAATCGCAATTGTGCTGATTGTGGTGCAACAGATCCTAAATGGGCGTCAGCAAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGGAGTCTTGGTACTCATATATCAAAGGTTTTGTCAGTGACCCTAGATGAATGGTCTGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAACTCTTCTGCAAATTCAATTTACGAGGCTTTTATTCCTGTGGGAGTTTCAAAGCCTGGACCAGATGCCGGTCATGAGGAACGTTCAAAATTCATCCGGTCAAAGTATGAGCTTCAAGATTTTCTGAAACCTAGCTTACGGATTAACTCAGGTCCTTCTAGAAAGAACTCTCTCCAGAGCACTCTCCAATCAAATAGTTTTTCTAGAAAGATTATCGATAGTTTCCGTTCAAATTCTTCAGAGAAATCGCAGGAAGGCATGGTAGAATTTATTGGTTTATTGAAGGTAAAGGTGATTAGAGGCACAAATTTAGCTATTCGAGATATGATGACAAGCGATCCTTATGTCATCCTGACTCTTGGGCAGCAGACTCTTCGGACGACTGTAATAAAGAGTAACTTGAATCCTGTCTGGAATGAGGAACTCATGCTGTCTGTACCTGAGCAATTTGGACCTTTGCAGTTGGTGTTTGATTATGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATCTTCAGCCTTTGATAACATCTGCAATGGCGTTCGGGGATGCAGGAATGTTTGGCAACATGCAAATCGGAAAATGGCTGAAGTCGAATGACAATGCCCTCATAGACGATAGCACAGTTAATATTATCGACGGGAAGGTAAAACAGGAGCTGTCTCTCAAGCTGCAGAATGTTGAGTGTGGAGAATTAGATTTAGAACTAGAGTGGATGCCCCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

336

Amino Acids

37.21

Weight (kDa)

5.06

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	16 - 131	3.9e-37	Putative GTPase activating protein for Arf
C2	PF00168	180 - 267	4e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	3 cut(s)	61, 104, 596
AcsI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
AcuI	CTGAAG	3 cut(s)	486, 773, 884
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	184, 702
AfiI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	7 cut(s)	282, 315, 351, 380, 495, 547, 667
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	6 cut(s)	22, 376, 399, 578, 934, 946
AluI	AGCT	6 cut(s)	22, 376, 399, 578, 934, 946
Alw21I	GWGCWC	2 cut(s)	171, 446
Alw26I	GTCTC	1 cut(s)	942
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	61, 104, 596
AlwNI	CAGNNNCTG	1 cut(s)	934
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	628, 946
ApoI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	323, 416, 716
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	3 cut(s)	323, 416, 716
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	171, 446
BbvI	GCAGC	2 cut(s)	640, 933
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	942
BfaI	CTAG	5 cut(s)	215, 396, 423, 468, 983
BfmI	CTRYAG	1 cut(s)	947
BisI	GCNGC	2 cut(s)	629, 947
BlsI	GCNGC	2 cut(s)	630, 948
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	3 cut(s)	323, 416, 716
BmgT120I	GGNCC	3 cut(s)	323, 416, 716
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	232, 319, 814, 981
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	926
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 38, 332
Bse118I	RCCGGY	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	252, 816
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	480
BseGI	GGATG	4 cut(s)	357, 612, 829, 996
BseLI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BseMI	GCAATG	2 cut(s)	252, 816
BseMII	CTCAG	3 cut(s)	51, 426, 696
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	640, 933
BshFI	GGCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	171, 446
BsiSI	CCGG	2 cut(s)	333, 361
BslI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BsmAI	GTCTC	1 cut(s)	942
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	171, 446
Bsp143I	GATC	4 cut(s)	66, 109, 601, 784
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	50, 425, 697
BspDI	ATCGAT	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	951
BspPI	GGATC	3 cut(s)	61, 104, 596
BsrDI	GCAATG	2 cut(s)	252, 816
BsrFI	RCCGGY	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	4 cut(s)	66, 109, 601, 784
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	11, 649, 901
Bst6I	CTCTTC	2 cut(s)	274, 642
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	37, 412, 705
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	4 cut(s)	357, 612, 829, 996
BstKTI	GATC	4 cut(s)	69, 112, 604, 787
BstMAI	GTCTC	1 cut(s)	942
BstMBI	GATC	4 cut(s)	66, 109, 601, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 1000
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	947
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	640, 933
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	4 cut(s)	357, 612, 829, 996
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	934
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	323, 416, 716
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	183, 701
CviAII	CATG	4 cut(s)	338, 523, 691, 844
CviQI	GTAC	2 cut(s)	183, 701
DdeI	CTNAG	3 cut(s)	37, 412, 705
DpnI	GATC	4 cut(s)	68, 111, 603, 786
DpnII	GATC	4 cut(s)	66, 109, 601, 784
Eam1104I	CTCTTC	2 cut(s)	274, 642
EarI	CTCTTC	2 cut(s)	274, 642
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	323, 416, 716
Eco57I	CTGAAG	3 cut(s)	486, 773, 884
Eco81I	CCTNAGG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	4 cut(s)	341, 526, 694, 847
FalI	AAGNNNNNCTT	4 cut(s)	589, 621, 647, 679
FatI	CATG	4 cut(s)	337, 522, 690, 843
Fnu4HI	GCNGC	2 cut(s)	629, 947
FokI	GGATG	4 cut(s)	344, 599, 836, 1003
Fsp4HI	GCNGC	2 cut(s)	629, 947
FspBI	CTAG	5 cut(s)	215, 396, 423, 468, 983
GluI	GCNGC	2 cut(s)	629, 947
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	333, 361
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	341, 526, 694, 847
HinfI	GANTC	5 cut(s)	4, 175, 619, 634, 667
HpaII	CCGG	2 cut(s)	333, 361
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	229, 390, 505, 642, 854
Hpy188III	TCNNGA	8 cut(s)	338, 380, 423, 439, 468, 584, 616, 676
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	4 cut(s)	429, 512, 541, 913
HpyCH4III	ACNGT	3 cut(s)	11, 649, 901
HpyCH4IV	ACGT	2 cut(s)	346, 746
HpyCH4V	TGCA	9 cut(s)	104, 169, 245, 275, 724, 809, 827, 847, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 1000
HpyF3I	CTNAG	3 cut(s)	37, 412, 705
HpySE526I	ACGT	2 cut(s)	346, 746
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	341, 526, 694, 847
Kzo9I	GATC	4 cut(s)	66, 109, 601, 784
LmnI	GCTCC	2 cut(s)	19, 931
Lsp1109I	GCAGC	2 cut(s)	640, 933
LweI	GCATC	4 cut(s)	232, 319, 814, 981
MaeI	CTAG	5 cut(s)	215, 396, 423, 468, 983
MaeII	ACGT	2 cut(s)	346, 746
MaeIII	GTNAC	2 cut(s)	208, 659
MalI	GATC	4 cut(s)	68, 111, 603, 786
MboI	GATC	4 cut(s)	66, 109, 601, 784
MboII	GAAGA	5 cut(s)	60, 261, 492, 629, 779
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	171, 446
MlyI	GAGTC	3 cut(s)	184, 613, 628
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	9 cut(s)	21, 46, 254, 283, 334, 557, 676, 772, 893
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	4 cut(s)	53, 152, 408, 903
MspI	CCGG	2 cut(s)	333, 361
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	28, 1000
NdeII	GATC	4 cut(s)	66, 109, 601, 784
NlaIII	CATG	4 cut(s)	341, 526, 694, 847
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	847
PagI	TCATGA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 667
PkrI	GCNGC	2 cut(s)	630, 948
PleI	GAGTC	3 cut(s)	183, 613, 628
PpsI	GAGTC	3 cut(s)	183, 613, 628
PpuMI	RGGWCCY	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	323, 416, 716
PspPPI	RGGWCCY	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	951
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	184, 702
RsaNI	GTAC	2 cut(s)	183, 701
SaqAI	TTAA	4 cut(s)	53, 152, 408, 903
SatI	GCNGC	2 cut(s)	629, 947
Sau3AI	GATC	4 cut(s)	66, 109, 601, 784
Sau96I	GGNCC	3 cut(s)	323, 416, 716
SchI	GAGTC	3 cut(s)	184, 613, 628
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	171, 446
SfaNI	GCATC	4 cut(s)	232, 319, 814, 981
SfcI	CTRYAG	1 cut(s)	947
SinI	GGWCC	3 cut(s)	323, 416, 716
SmlI	CTYRAG	2 cut(s)	941, 998
SmoI	CTYRAG	2 cut(s)	941, 998
SseBI	AGGCCT	1 cut(s)	31
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	5 cut(s)	215, 396, 423, 468, 983
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	11, 649, 901
TaiI	ACGT	2 cut(s)	349, 749
TaqI	TCGA	4 cut(s)	480, 583, 869, 912
TfiI	GAWTC	2 cut(s)	4, 667
Tru1I	TTAA	4 cut(s)	53, 152, 408, 903
Tru9I	TTAA	4 cut(s)	53, 152, 408, 903
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	628, 946
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	17, 234, 249, 346
TspGWI	ACGGA	2 cut(s)	418, 479
TspRI	CASTG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	323, 416, 716
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	5 cut(s)	277, 353, 496, 530, 571
XbaI	TCTAGA	2 cut(s)	422, 467
XceI	RCATGY	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	5 cut(s)	215, 396, 423, 468, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.