Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Forward (+)

1979134 .. 1979325

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGACAGAGAGTCGGCTCTGCCGTGGATGGAACCCGGCTCTCCGCCTCTGCTGGTGTATAGAAGGACGAATCATAGCCGTCAAGGCTCTCTTCACCCACTCGTCCTCGACTCCACTGATTCAAACCAACGAGTTTGTCATGGCAGATCTGCGCATGTTCAGCCTGTTGTTGGGATACGGCGTTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

63

Amino Acids

7.25

Weight (kDa)

8.66

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AciI	CCGC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	122
AhdI	GACNNNNNGTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	85
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	2 cut(s)	6, 62
BciVI	GTATCC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 159
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	153
CviAII	CATG	2 cut(s)	139, 154
CviJI	RGCY	5 cut(s)	16, 38, 77, 86, 162
CviKI_1	RGCY	5 cut(s)	16, 38, 77, 86, 162
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	32
FaeI	CATG	2 cut(s)	142, 157
FaiI	YATR	4 cut(s)	59, 74, 140, 155
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	2 cut(s)	138, 153
FokI	GGATG	1 cut(s)	39
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	1 cut(s)	152
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	142, 157
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	4 cut(s)	10, 69, 109, 118
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 159
Hsp92II	CATG	2 cut(s)	142, 157
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	37, 48, 176
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	19, 103
MnlI	CCTC	2 cut(s)	56, 115
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	83, 159
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	142, 157
NlaIV	GGNNCC	1 cut(s)	32
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	69, 118
PleI	GAGTC	2 cut(s)	18, 103
PpsI	GAGTC	2 cut(s)	18, 103
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	19, 103
ScrFI	CCNGG	1 cut(s)	35
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	69, 118
TscAI	CASTG	1 cut(s)	120
TspRI	CASTG	1 cut(s)	120
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.