Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Forward (+)

4508715 .. 4513594

Gene Structure 4880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G090400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATCACCGTCCAATGGAACTGGGGAGGCCTGCCTCAGGTAAAAGAAGATTAAAAGATCTATTGCTGCAAAAAGATAATCGCTCTTGTGCTGATTGTGGTGCACCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCATAGGAGCCTTGGTACTCATATATCAAAGGTTTTATCAGTGACACTGGATGAATGGTCTGATGATGAAATTGATGCAATGATAGAAGTTGGGGGAAATTCTTCTGCTAATGCAATTTATGAGGCTTTTATTCCAGATGGATGTTCAAAGCCTGGACCAGATGCTGGTCACGAGGAACGCTCAAAATTCATCCGGTCAAAGTATGAGGCTCAAGAATTTCTGAAACCTAGCTTGCGGATTAACTCAGGTCCTTCTAGAAAGAACTCTCTTCAGAACACTCTCCAATCAAGTAGTTTTTCTAGAAAGATTATCGATAGTTTTCGTTCAAATTCTTCGCAGAAAACGGAAGGTATGGTAGAATTTATTGGATTATTGAAGGTAAAGGTGATTAGAGGCACAAATTTAGCTATTCGAGATATGATGACAAGTGATCCTTATGTCATCCTGACTCTTGGGCAACAGACTCTTCAGACGACTATAATAAAAAGTAACTTGAATCCGGTCTGGAATGAAGAACTCATGCTGTCTGTTCCTCAGCGATATGGAGCTTTACAGTTGCGGGTGTTTGATCATGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATCTTCAGCCCTTGATAACATCTGCAATGGCATTTGGGGATGCAGGAATGTTTGGGAACATGCAAATTGGAAAATGGCTGAAGTCAAATGACAATGCCCTCGTAGACGATAGCACTGTTAACATTGTTGATGGGAAGGTAAAACAGGAGGTGACACTCAAGCTCCAGAATGTGGAATGTGGAGAAATAGATTTAGAACTAGAGTGGATGCCTCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

336

Amino Acids

37.14

Weight (kDa)

5.3

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	332, 955
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	2 cut(s)	403, 727
AclWI	GGATC	2 cut(s)	104, 593
AcsI	RAATTY	6 cut(s)	265, 353, 383, 496, 527, 568
AcuI	CTGAAG	4 cut(s)	422, 620, 773, 884
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	4 cut(s)	16, 38, 332, 955
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	315, 495, 544, 664
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	399, 575, 716, 946
AluI	AGCT	4 cut(s)	399, 575, 716, 946
Alw21I	GWGCWC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	104, 593
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	6 cut(s)	265, 353, 383, 496, 527, 568
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	323, 416
AsuHPI	GGTGA	2 cut(s)	565, 946
AvaII	GGWCC	2 cut(s)	323, 416
AxyI	CCTNAGG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	106
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	299, 908
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	736
BfaI	CTAG	4 cut(s)	396, 423, 468, 983
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	323, 416
BmgT120I	GGNCC	2 cut(s)	323, 416
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	4 cut(s)	232, 319, 814, 981
BmuI	ACTGGG	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	932
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	363, 926
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	2 cut(s)	360, 667
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 930, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 38, 332, 955
Bse1I	ACTGG	2 cut(s)	27, 219
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	252, 816
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	6 cut(s)	223, 314, 357, 609, 829, 996
BseLI	CCNNNNNNNGG	4 cut(s)	16, 38, 332, 955
BseMI	GCAATG	2 cut(s)	252, 816
BseMII	CTCAG	3 cut(s)	51, 426, 716
BseNI	ACTGG	2 cut(s)	27, 219
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	361, 668
BslI	CCNNNNNNNGG	4 cut(s)	16, 38, 332, 955
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	5 cut(s)	58, 109, 598, 736, 784
BspACI	CCGC	2 cut(s)	403, 727
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	50, 425, 715
BspDI	ATCGAT	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	104, 593
BsrDI	GCAATG	2 cut(s)	252, 816
BsrI	ACTGG	2 cut(s)	27, 219
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	5 cut(s)	58, 109, 598, 736, 784
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	11, 723, 901
Bst6I	CTCTTC	2 cut(s)	441, 639
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	33, 401
BstDEI	CTNAG	3 cut(s)	37, 412, 702
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	6 cut(s)	223, 314, 357, 609, 829, 996
BstKTI	GATC	5 cut(s)	61, 112, 601, 739, 787
BstMBI	GATC	5 cut(s)	58, 109, 598, 736, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	1000
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	58, 109
BstYI	RGATCY	2 cut(s)	58, 109
Bsu15I	ATCGAT	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	6 cut(s)	223, 314, 357, 609, 829, 996
BtsIMutI	CAGTG	3 cut(s)	212, 213, 897
Cac8I	GCNNGC	2 cut(s)	33, 401
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	323, 416
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	688, 740, 844
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	37, 412, 702
DpnI	GATC	5 cut(s)	60, 111, 600, 738, 786
DpnII	GATC	5 cut(s)	58, 109, 598, 736, 784
Eam1104I	CTCTTC	2 cut(s)	441, 639
EarI	CTCTTC	2 cut(s)	441, 639
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	323, 416
Eco57I	CTGAAG	4 cut(s)	422, 620, 773, 884
Eco81I	CCTNAGG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	691, 743, 847
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	3 cut(s)	687, 739, 843
FauI	CCCGC	1 cut(s)	720
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	6 cut(s)	230, 321, 344, 596, 836, 1003
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	4 cut(s)	396, 423, 468, 983
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	932
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	361, 668
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	691, 743, 847
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	4 cut(s)	4, 616, 631, 664
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	2 cut(s)	361, 668
HphI	GGTGA	2 cut(s)	565, 946
Hpy166II	GTNNAC	3 cut(s)	104, 889, 904
Hpy188I	TCNGA	5 cut(s)	137, 229, 390, 441, 639
Hpy8I	GTNNAC	3 cut(s)	104, 889, 904
HpyAV	CCTTC	4 cut(s)	429, 509, 538, 913
HpyCH4III	ACNGT	3 cut(s)	11, 723, 901
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	8 cut(s)	70, 104, 169, 245, 281, 809, 827, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1000
HpyF3I	CTNAG	3 cut(s)	37, 412, 702
HpySE526I	ACGT	1 cut(s)	746
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	691, 743, 847
Ksp22I	TGATCA	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	58, 109, 598, 736, 784
LmnI	GCTCC	3 cut(s)	174, 713, 951
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	4 cut(s)	232, 319, 814, 981
MaeI	CTAG	4 cut(s)	396, 423, 468, 983
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	4 cut(s)	208, 335, 656, 934
MalI	GATC	5 cut(s)	60, 111, 600, 738, 786
MboI	GATC	5 cut(s)	58, 109, 598, 736, 784
MboII	GAAGA	7 cut(s)	60, 261, 428, 492, 626, 692, 779
MflI	RGATCY	2 cut(s)	58, 109
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	9 cut(s)	237, 265, 282, 353, 383, 496, 527, 568, 849
MlyI	GAGTC	2 cut(s)	610, 625
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	4 cut(s)	53, 152, 408, 903
MspI	CCGG	2 cut(s)	361, 668
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	1000
NdeII	GATC	5 cut(s)	58, 109, 598, 736, 784
NlaIII	CATG	3 cut(s)	691, 743, 847
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	3 cut(s)	208, 335, 934
NspI	RCATGY	1 cut(s)	847
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 664
PflMI	CCANNNNNTGG	2 cut(s)	332, 955
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	2 cut(s)	610, 625
PpsI	GAGTC	2 cut(s)	610, 625
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	323, 416
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	58, 109
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	53, 152, 408, 903
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	5 cut(s)	58, 109, 598, 736, 784
Sau96I	GGNCC	2 cut(s)	323, 416
SchI	GAGTC	2 cut(s)	610, 625
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	4 cut(s)	232, 319, 814, 981
SinI	GGWCC	2 cut(s)	323, 416
SmlI	CTYRAG	3 cut(s)	378, 941, 998
SmoI	CTYRAG	3 cut(s)	378, 941, 998
Sse9I	AATT	9 cut(s)	237, 265, 282, 353, 383, 496, 527, 568, 849
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	403, 727
SspMI	CTAG	4 cut(s)	396, 423, 468, 983
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	11, 723, 901
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	2 cut(s)	480, 580
TasI	AATT	9 cut(s)	237, 265, 282, 353, 383, 496, 527, 568, 849
TfiI	GAWTC	2 cut(s)	4, 664
Tru1I	TTAA	4 cut(s)	53, 152, 408, 903
Tru9I	TTAA	4 cut(s)	53, 152, 408, 903
TscAI	CASTG	3 cut(s)	213, 219, 904
TseFI	GTSAC	3 cut(s)	208, 335, 934
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	3 cut(s)	208, 335, 934
TspDTI	ATGAA	5 cut(s)	17, 234, 249, 346, 693
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	213, 219, 904
Van91I	CCANNNNNTGG	2 cut(s)	332, 955
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	323, 416
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	6 cut(s)	265, 353, 383, 496, 527, 568
XbaI	TCTAGA	2 cut(s)	422, 467
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	888
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	4 cut(s)	396, 423, 468, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.