Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Reverse (-)

5147699 .. 5151159

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGAATACCAGCATGACAACAGCACCACTCCTCAAAGAGTAAGTTTCTTGTACTCTCCAATCTCTTCTTCCAACAAAAACGATAACACAAGTGATACCAACAACAACAACAACAATAATAATAGTAGCAATTATGGTCCTGGTTACAATAATACTAACAACAACAATCATCACCACCAACACATGTTGTTTCCACATATGAGCTCTCTTCTCCCTCAAACAACCGAGAATTGCTTCCGATCTGATCATGATCAACCCAACAACAACAACAACCCATCTGTTAAATCTGAAGCTAGCTCCTCAAGAATCAATCATTACTCCATGTTAATGAGAGCCATCCACAATACTCAAGAAGCTAACAACAACAACAATGACAACGTAAGCGATGTTGAAGCCATGAAGGCTAAAATCATTGCTCATCCTCACTACTCTACCCTCCTACAAGCTTACTTGGACTGCCAAAAGATTGGAGCTCCACCTGATGTGGTTGATAGAATTACGGCGGCACGGCAAGACTTTGAGGCTCGACAACAGCGGTCAACACCGTCTGTCTCTGCCTCCTCTAGAGACCCGGAGTTAGATCAATTCATGGAAGCATACTGTGACATGTTGGTTAAATATCGTGAGGAGCTAACAAGGCCCATTCAGGAAGCAATGGAGTTTATACGTCGTATTGAATCTCAGCTTAGCATGTTGTGTCAGAGTCCCATTCACATCCTCAACAATCCTGATGGGAAGAGTGACAATATGGGATCATCAGACGAAGAACAAGAGAATAACAGCGGAGGGGAAACAGAATTACCGGAAATAGACCCGAGGGCCGAAGATCGGGAACTCAAGAACCATTTGCTGAAGAAGTATAGTGGATACTTAAGCAGTTTGAAGCAAGAACTATCCAAGAAGAAAAAGAAAGGTAAACTTCCTAAAGAAGCACGGCAGAAGCTTCTCACGTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCTGAGTCAGAGAAGGTAGCGTTGGCGGAATCAACGGGGTTAGATCAGAAACAAATCAACAATTGGTTCATAAACCAAAGAAAGCGTCACTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCACCCGCACCACGCAGCTCTGTACATGGATGGTCATTACATGGGTGATGGACCTTATCGTCTCGGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

398

Amino Acids

45.84

Weight (kDa)

6.02

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	133 - 174	9.9e-22	KNOX1 domain
KNOX2	PF03791	189 - 234	2.1e-26	KNOX2 domain
ELK	PF03789	279 - 300	3.6e-09	ELK domain
Homeobox_KN	PF05920	319 - 358	6.4e-19	Homeobox KN domain
Homeodomain	PF00046	326 - 359	1.3e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1182
AciI	CCGC	5 cut(s)	506, 538, 786, 1013, 1130
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	1 cut(s)	977
AcuI	CTGAAG	3 cut(s)	312, 875, 1110
AcvI	CACGTG	1 cut(s)	954
AdeI	CACNNNGTG	1 cut(s)	957
AfaI	GTAC	2 cut(s)	56, 1148
AfiI	CCNNNNNNNGG	1 cut(s)	831
AflII	CTTAAG	1 cut(s)	874
AflIII	ACRYGT	2 cut(s)	186, 609
AgsI	TTSAA	3 cut(s)	395, 680, 886
AjnI	CCWGG	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 992, 1024
Alw21I	GWGCWC	2 cut(s)	209, 478
Alw26I	GTCTC	3 cut(s)	559, 564, 1190
AlwI	GGATC	1 cut(s)	763
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	3 cut(s)	641, 822, 977
ApeKI	GCWGC	2 cut(s)	1123, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	1057, 1089
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	5 cut(s)	140, 642, 822, 1175, 1190
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	3 cut(s)	167, 1120, 1181
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	3 cut(s)	140, 1175, 1190
BalI	TGGCCA	1 cut(s)	979
BanII	GRGCYC	2 cut(s)	209, 478
BbrPI	CACGTG	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	1098
Bbv12I	GWGCWC	2 cut(s)	209, 478
BbvI	GCAGC	2 cut(s)	1135, 1151
BccI	CCATC	8 cut(s)	286, 347, 728, 1093, 1105, 1109, 1148, 1166
BceAI	ACGGC	3 cut(s)	519, 527, 953
BciT130I	CCWGG	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	863
BclI	TGATCA	2 cut(s)	247, 253
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	3 cut(s)	559, 564, 1190
BfaI	CTAG	2 cut(s)	297, 567
BfmI	CTRYAG	1 cut(s)	1121
BfrI	CTTAAG	1 cut(s)	874
BfuI	GTATCC	1 cut(s)	863
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	3 cut(s)	507, 1124, 1140
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	3 cut(s)	508, 1125, 1141
Bme1390I	CCNGG	2 cut(s)	144, 575
Bme18I	GGWCC	3 cut(s)	140, 1175, 1190
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	5 cut(s)	140, 642, 822, 1175, 1190
BmrFI	CCNGG	2 cut(s)	144, 575
BmtI	GCTAGC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	1098
Bpu1102I	GCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	3 cut(s)	289, 336, 824
BpuMI	CCSGG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	954
BsaBI	GATNNNNATC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	818
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	1 cut(s)	831
Bse1I	ACTGG	1 cut(s)	1082
Bse3DI	GCAATG	2 cut(s)	414, 663
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	818
BseGI	GGATG	5 cut(s)	339, 421, 717, 1120, 1159
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	831
BseMI	GCAATG	2 cut(s)	414, 663
BseMII	CTCAG	2 cut(s)	698, 981
BseNI	ACTGG	1 cut(s)	1082
BseRI	GAGGAG	4 cut(s)	24, 292, 553, 644
BseXI	GCAGC	2 cut(s)	1135, 1151
BshFI	GGCC	3 cut(s)	643, 824, 979
BsiHKAI	GWGCWC	2 cut(s)	209, 478
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	2 cut(s)	575, 806
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	1 cut(s)	831
BsmAI	GTCTC	3 cut(s)	559, 564, 1190
BsmBI	CGTCTC	1 cut(s)	1190
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	643, 824, 979
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	209, 478
Bsp1407I	TGTACA	1 cut(s)	1146
Bsp143I	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
Bsp1720I	GCTNAGC	1 cut(s)	689
BspACI	CCGC	5 cut(s)	506, 538, 786, 1013, 1130
BspANI	GGCC	3 cut(s)	643, 824, 979
BspCNI	CTCAG	2 cut(s)	697, 982
BspHI	TCATGA	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	1125
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	763
BspTI	CTTAAG	1 cut(s)	874
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	2 cut(s)	414, 663
BsrGI	TGTACA	1 cut(s)	1146
BsrI	ACTGG	1 cut(s)	1082
BssECI	CCNNGG	1 cut(s)	818
BssMI	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	549, 605
Bst6I	CTCTTC	3 cut(s)	73, 216, 734
BstAFI	CTTAAG	1 cut(s)	874
BstAUI	TGTACA	1 cut(s)	1146
BstBAI	YACGTR	1 cut(s)	954
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	684, 689, 990
BstF5I	GGATG	5 cut(s)	339, 421, 717, 1120, 1159
BstKTI	GATC	7 cut(s)	245, 250, 256, 586, 758, 832, 1033
BstMAI	GTCTC	3 cut(s)	559, 564, 1190
BstMBI	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 640, 1129
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	4 cut(s)	190, 613, 697, 1099
BstSCI	CCNGG	2 cut(s)	142, 573
BstSFI	CTRYAG	1 cut(s)	1121
BstV1I	GCAGC	2 cut(s)	1135, 1151
BstV2I	GAAGAC	1 cut(s)	1098
BstXI	CCANNNNNNTGG	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	3 cut(s)	643, 824, 979
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	5 cut(s)	339, 421, 717, 1120, 1159
BtsIMutI	CAGTG	1 cut(s)	1075
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	5 cut(s)	140, 642, 822, 1175, 1190
CseI	GACGC	1 cut(s)	1061
Csp6I	GTAC	2 cut(s)	55, 1147
CviQI	GTAC	2 cut(s)	55, 1147
DdeI	CTNAG	3 cut(s)	684, 689, 990
DpnI	GATC	7 cut(s)	244, 249, 255, 585, 757, 831, 1032
DpnII	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
DraIII	CACNNNGTG	1 cut(s)	957
DrdI	GACNNNNNNGTC	1 cut(s)	1182
DseDI	GACNNNNNNGTC	1 cut(s)	1182
EaeI	YGGCCR	1 cut(s)	977
Eam1104I	CTCTTC	3 cut(s)	73, 216, 734
EarI	CTCTTC	3 cut(s)	73, 216, 734
EciI	GGCGGA	1 cut(s)	1028
Ecl136II	GAGCTC	2 cut(s)	207, 476
Eco24I	GRGCYC	2 cut(s)	209, 478
Eco31I	GGTCTC	1 cut(s)	564
Eco47I	GGWCC	3 cut(s)	140, 1175, 1190
Eco53kI	GAGCTC	2 cut(s)	207, 476
Eco57I	CTGAAG	3 cut(s)	312, 875, 1110
Eco72I	CACGTG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	817
EcoICRI	GAGCTC	2 cut(s)	207, 476
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	209, 478
Esp3I	CGTCTC	1 cut(s)	1190
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	1 cut(s)	693
FauI	CCCGC	1 cut(s)	1137
FauNDI	CATATG	1 cut(s)	201
FbaI	TGATCA	2 cut(s)	247, 253
Fnu4HI	GCNGC	3 cut(s)	507, 1124, 1140
FokI	GGATG	5 cut(s)	326, 408, 704, 1127, 1166
FriOI	GRGCYC	2 cut(s)	209, 478
Fsp4HI	GCNGC	3 cut(s)	507, 1124, 1140
FspBI	CTAG	2 cut(s)	297, 567
GluI	GCNGC	3 cut(s)	507, 1124, 1140
HaeIII	GGCC	3 cut(s)	643, 824, 979
HapII	CCGG	2 cut(s)	575, 806
HgaI	GACGC	1 cut(s)	1061
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	2 cut(s)	447, 944
HinfI	GANTC	5 cut(s)	309, 680, 706, 992, 1016
HpaII	CCGG	2 cut(s)	575, 806
HphI	GGTGA	3 cut(s)	167, 1120, 1181
Hpy166II	GTNNAC	2 cut(s)	543, 920
Hpy188I	TCNGA	9 cut(s)	242, 247, 292, 705, 763, 991, 997, 1035, 1090
Hpy188III	TCNNGA	9 cut(s)	251, 306, 353, 567, 626, 650, 731, 833, 841
Hpy8I	GTNNAC	2 cut(s)	543, 920
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	3 cut(s)	397, 994, 996
HpyCH4III	ACNGT	2 cut(s)	549, 605
HpyCH4IV	ACGT	3 cut(s)	381, 670, 953
HpyCH4V	TGCA	3 cut(s)	967, 1099, 1123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 640, 1129
HpyF3I	CTNAG	3 cut(s)	684, 689, 990
HpySE526I	ACGT	3 cut(s)	381, 670, 953
Ksp22I	TGATCA	2 cut(s)	247, 253
Kzo9I	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
LmnI	GCTCC	4 cut(s)	305, 473, 481, 631
LpnPI	CCDG	9 cut(s)	26, 129, 156, 495, 588, 635, 744, 819, 1063
Lsp1109I	GCAGC	2 cut(s)	1135, 1151
MaeI	CTAG	2 cut(s)	297, 567
MaeII	ACGT	3 cut(s)	381, 670, 953
MaeIII	GTNAC	4 cut(s)	146, 605, 743, 1073
MalI	GATC	7 cut(s)	244, 249, 255, 585, 757, 831, 1032
MboI	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
MfeI	CAATTG	1 cut(s)	1048
MhlI	GDGCHC	2 cut(s)	209, 478
MlsI	TGGCCA	1 cut(s)	979
MluCI	AATT	6 cut(s)	133, 232, 498, 587, 800, 1048
MluNI	TGGCCA	1 cut(s)	979
MlyI	GAGTC	2 cut(s)	715, 1001
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	979
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	979
MseI	TTAA	4 cut(s)	285, 329, 618, 875
MslI	CAYNNNNRTG	2 cut(s)	329, 1109
Msp20I	TGGCCA	1 cut(s)	979
MspA1I	CMGCKG	2 cut(s)	538, 786
MspCI	CTTAAG	1 cut(s)	874
MspI	CCGG	2 cut(s)	575, 806
MspR9I	CCNGG	2 cut(s)	144, 575
MunI	CAATTG	1 cut(s)	1048
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	404, 640, 1129
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
NheI	GCTAGC	1 cut(s)	296
NmuCI	GTSAC	3 cut(s)	605, 743, 1073
NspI	RCATGY	4 cut(s)	190, 613, 697, 1099
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	2 cut(s)	186, 609
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	309, 680, 1016
PkrI	GCNGC	3 cut(s)	508, 1125, 1141
PleI	GAGTC	2 cut(s)	714, 1000
PmaCI	CACGTG	1 cut(s)	954
PmlI	CACGTG	1 cut(s)	954
PpsI	GAGTC	2 cut(s)	714, 1000
Ppu21I	YACGTR	1 cut(s)	954
PscI	ACATGT	2 cut(s)	186, 609
Psp124BI	GAGCTC	2 cut(s)	209, 478
Psp6I	CCWGG	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	5 cut(s)	140, 642, 822, 1175, 1190
PstI	CTGCAG	1 cut(s)	1125
RsaI	GTAC	2 cut(s)	56, 1148
RsaNI	GTAC	2 cut(s)	55, 1147
RseI	CAYNNNNRTG	2 cut(s)	329, 1109
SacI	GAGCTC	2 cut(s)	209, 478
SaqAI	TTAA	4 cut(s)	285, 329, 618, 875
SatI	GCNGC	3 cut(s)	507, 1124, 1140
Sau3AI	GATC	7 cut(s)	242, 247, 253, 583, 755, 829, 1030
Sau96I	GGNCC	5 cut(s)	140, 642, 822, 1175, 1190
SchI	GAGTC	2 cut(s)	715, 1001
ScrFI	CCNGG	2 cut(s)	144, 575
SduI	GDGCHC	2 cut(s)	209, 478
SfcI	CTRYAG	1 cut(s)	1121
SinI	GGWCC	3 cut(s)	140, 1175, 1190
SmiMI	CAYNNNNRTG	2 cut(s)	329, 1109
SmlI	CTYRAG	4 cut(s)	304, 351, 839, 874
SmoI	CTYRAG	4 cut(s)	304, 351, 839, 874
Sse9I	AATT	6 cut(s)	133, 232, 498, 587, 800, 1048
SsiI	CCGC	5 cut(s)	506, 538, 786, 1013, 1130
SspMI	CTAG	2 cut(s)	297, 567
SstI	GAGCTC	2 cut(s)	209, 478
StyD4I	CCNGG	2 cut(s)	142, 573
TaaI	ACNGT	2 cut(s)	549, 605
TaiI	ACGT	3 cut(s)	384, 673, 956
TaqI	TCGA	1 cut(s)	529
TaqII	GACCGA	1 cut(s)	1178
TasI	AATT	6 cut(s)	133, 232, 498, 587, 800, 1048
TatI	WGTACW	2 cut(s)	54, 1146
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	3 cut(s)	309, 680, 1016
Tru1I	TTAA	4 cut(s)	285, 329, 618, 875
Tru9I	TTAA	4 cut(s)	285, 329, 618, 875
TscAI	CASTG	1 cut(s)	1082
TseFI	GTSAC	3 cut(s)	605, 743, 1073
TseI	GCWGC	2 cut(s)	1123, 1139
Tsp45I	GTSAC	3 cut(s)	605, 743, 1073
TspDTI	ATGAA	4 cut(s)	416, 580, 1045, 1093
TspRI	CASTG	1 cut(s)	1082
Vha464I	CTTAAG	1 cut(s)	874
VpaK11BI	GGWCC	3 cut(s)	140, 1175, 1190
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	4 cut(s)	190, 613, 697, 1099
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	297, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.