Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Forward (+)

24568658 .. 24573109

Gene Structure 4452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGGAATACAATAACAGTGATGAAATGGATCATGAGAGTCAAGGCACTCCTAGAGGAAATTTCCTCTACGCTTCTCCAACTCTTGGAGGTAACTATGGTAGAGCTGCTGCTGCAAGTGATCATAATCAGCAGAACAACACCTTTCATCTTCAATCCAGCGGCGGTGAGTGTTTTCCGTCAACACAGTCAACCGTGAAAACCGAAGCAGCCGGAAGTACTTCCCAGCATGCTCGTCACAAATTTCATCATCCTCAGTTTCCTCCCCCTTCATTAGTATTGTCAAGAGGTCACAATGATCAGCAGCTTCCGGTTCAGCAGCAAAACGAGAATGAAGTGGAGGCCATTAAAGCTAAGATCATCGCCCACCCTCACTACTCTAACCTCTTGCAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCATCTGAAGTTGTGGCTCGTCTCTCAGCTGCGCGCCAAGAGTTTGTAGCACGACAGCGATCTTCAGTCAGTTCGAGAGATGCTTCTTCAAAAGACCCAGAACTCGATCAGTTCATGGAAGCTTATTATGATATGCTGGTTAAGTATCGGGAGGAACTAACAAGGCCCATACAAGAAGCAATGGATTTCATGAAGAAGATCGAAACTCAACTTAACATGCTTGGCAATAACAGCACCGCTACTCCTCTGCGCATCTTCTCGGCCTCTGCACTAGATGACAAGTGTGACGGAAATGGTTCATCTGAAGAGGACCAGGACAACAACAGCGGTGGAGAAACAGAAGTAGCCGAGATTGATCCGAGAGCTGAAGACAGAGAGCTTAAAAACCACCTGTTGAGAAAGTACAGTGGTTACTTGAGTAGCCTCAAGCAAGAACTATCCAAAAAAAAGAAGAAAGGCAAATTGCCCAAAGACGCCAGACAGAAGCTTCTCAGCTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCGGAGTCGGAGAAGGTGGCATTGGCAGAGTCGACAGGTTTGGATCAGAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCGGAGGACATGCAGTTCATGGTGATGGATGGCTTGCATCCACAGAATGCAGCAGCCCTCTATATGGATGGCCACTACATCGGCGATGGTCATTACCGGCTCGGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

387

Amino Acids

43.75

Weight (kDa)

6.07

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	115 - 156	1.4e-22	KNOX1 domain
KNOX2	PF03791	171 - 215	2e-24	KNOX2 domain
ELK	PF03789	267 - 288	3.9e-10	ELK domain
Homeobox_KN	PF05920	307 - 346	6.1e-19	Homeobox KN domain
Homeodomain	PF00046	314 - 347	1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	674
AccB7I	CCANNNNNTGG	2 cut(s)	86, 415
AccI	GTMKAC	1 cut(s)	983
AccII	CGCG	1 cut(s)	457
AciI	CCGC	4 cut(s)	162, 165, 660, 750
AclWI	GGATC	3 cut(s)	39, 773, 1002
AcoI	YGGCCR	2 cut(s)	941, 1120
AcsI	RAATTY	2 cut(s)	61, 242
AcuI	CTGAAG	4 cut(s)	450, 471, 747, 810
AcyI	GRCGYC	1 cut(s)	897
AfaI	GTAC	2 cut(s)	220, 827
AfiI	CCNNNNNNNGG	3 cut(s)	86, 415, 1114
AgsI	TTSAA	2 cut(s)	155, 513
AjnI	CCWGG	1 cut(s)	735
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AloI	GAACNNNNNNTCC	2 cut(s)	1049, 1081
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	39, 773, 1002
AoxI	GGCC	5 cut(s)	342, 587, 684, 941, 1120
ApeKI	GCWGC	9 cut(s)	107, 110, 113, 209, 304, 319, 452, 1100, 1103
ApoI	RAATTY	2 cut(s)	61, 242
Asp700I	GAANNNNTTC	2 cut(s)	220, 718
AspLEI	GCGC	3 cut(s)	457, 459, 675
AspS9I	GGNCC	3 cut(s)	588, 733, 1154
AsuHPI	GGTGA	2 cut(s)	179, 1084
AvaII	GGWCC	2 cut(s)	733, 1154
BalI	TGGCCA	2 cut(s)	943, 1122
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	9 cut(s)	94, 97, 100, 221, 316, 331, 439, 1112, 1115
BccI	CCATC	6 cut(s)	433, 1057, 1069, 1073, 1112, 1130
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	2 cut(s)	121, 298
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	54, 695
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	737
Bme18I	GGWCC	2 cut(s)	733, 1154
BmgT120I	GGNCC	3 cut(s)	588, 733, 1154
BmiI	GGNNCC	1 cut(s)	1156
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	3 cut(s)	493, 684, 1096
BpiI	GAAGAC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	833, 859
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	897
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 415, 1114
Bse118I	RCCGGY	1 cut(s)	1146
Bse1I	ACTGG	2 cut(s)	1019, 1046
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	737
BseGI	GGATG	4 cut(s)	250, 1084, 1087, 1123
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	86, 415, 1114
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	269, 462, 928
BseNI	ACTGG	2 cut(s)	1019, 1046
BsePI	GCGCGC	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	9 cut(s)	94, 97, 100, 221, 316, 331, 439, 1112, 1115
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	457
BshFI	GGCC	5 cut(s)	344, 589, 686, 943, 1122
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	3 cut(s)	213, 311, 1147
BslFI	GGGAC	1 cut(s)	1140
BslI	CCNNNNNNNGG	3 cut(s)	86, 415, 1114
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	1140
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	5 cut(s)	344, 589, 686, 943, 1122
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
BspACI	CCGC	4 cut(s)	162, 165, 660, 750
BspANI	GGCC	5 cut(s)	344, 589, 686, 943, 1122
BspCNI	CTCAG	3 cut(s)	268, 461, 927
BspFNI	CGCG	1 cut(s)	457
BspHI	TCATGA	2 cut(s)	34, 612
BspLI	GGNNCC	1 cut(s)	1156
BspPI	GGATC	3 cut(s)	39, 773, 1002
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	1146
BsrI	ACTGG	2 cut(s)	1019, 1046
BssAI	RCCGGY	1 cut(s)	1146
BssHII	GCGCGC	1 cut(s)	455
BssMI	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
BssNI	GRCGYC	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	4 cut(s)	20, 189, 196, 830
Bst6I	CTCTTC	2 cut(s)	723, 1028
BstACI	GRCGYC	1 cut(s)	897
BstC8I	GCNNGC	4 cut(s)	231, 393, 457, 1085
BstDEI	CTNAG	4 cut(s)	255, 354, 448, 914
BstF5I	GGATG	4 cut(s)	250, 1084, 1087, 1123
BstFNI	CGCG	1 cut(s)	457
BstHHI	GCGC	3 cut(s)	457, 459, 675
BstKTI	GATC	9 cut(s)	34, 124, 301, 360, 485, 532, 624, 781, 997
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 350, 654
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	3 cut(s)	233, 643, 1063
BstSCI	CCNGG	1 cut(s)	735
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	9 cut(s)	94, 97, 100, 221, 316, 331, 439, 1112, 1115
BstV2I	GAAGAC	1 cut(s)	798
BsuRI	GGCC	5 cut(s)	344, 589, 686, 943, 1122
BtgZI	GCGATG	2 cut(s)	346, 1149
BtsCI	GGATG	4 cut(s)	250, 1084, 1087, 1123
BtsIMutI	CAGTG	3 cut(s)	25, 835, 1039
Cac8I	GCNNGC	4 cut(s)	231, 393, 457, 1085
CciI	TCATGA	2 cut(s)	34, 612
CfoI	GCGC	3 cut(s)	457, 459, 675
Cfr10I	RCCGGY	1 cut(s)	1146
Cfr13I	GGNCC	3 cut(s)	588, 733, 1154
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	219, 826
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	8 cut(s)	35, 230, 400, 538, 613, 640, 1060, 1069
CviQI	GTAC	2 cut(s)	219, 826
DdeI	CTNAG	4 cut(s)	255, 354, 448, 914
DpnI	GATC	9 cut(s)	33, 123, 300, 359, 484, 531, 623, 780, 996
DpnII	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
EaeI	YGGCCR	2 cut(s)	941, 1120
Eam1104I	CTCTTC	2 cut(s)	723, 1028
EarI	CTCTTC	2 cut(s)	723, 1028
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	733, 1154
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	4 cut(s)	450, 471, 747, 810
EcoICRI	GAGCTC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	8 cut(s)	38, 233, 403, 541, 616, 643, 1063, 1072
FaqI	GGGAC	1 cut(s)	1140
FatI	CATG	8 cut(s)	34, 229, 399, 537, 612, 639, 1059, 1068
FbaI	TGATCA	2 cut(s)	121, 298
FblI	GTMKAC	1 cut(s)	983
FokI	GGATG	4 cut(s)	237, 1074, 1091, 1130
FriOI	GRGCYC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	54, 695
FspI	TGCGCA	1 cut(s)	674
GlaI	GCGC	3 cut(s)	456, 458, 674
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	5 cut(s)	344, 589, 686, 943, 1122
HapII	CCGG	3 cut(s)	213, 311, 1147
HgaI	GACGC	1 cut(s)	905
HhaI	GCGC	3 cut(s)	457, 459, 675
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	8 cut(s)	38, 233, 403, 541, 616, 643, 1063, 1072
Hin6I	GCGC	3 cut(s)	455, 457, 673
HinP1I	GCGC	3 cut(s)	455, 457, 673
HincII	GTYRAC	3 cut(s)	183, 192, 984
HindII	GTYRAC	3 cut(s)	183, 192, 984
HindIII	AAGCTT	3 cut(s)	393, 543, 908
HinfI	GANTC	3 cut(s)	40, 956, 980
HpaII	CCGG	3 cut(s)	213, 311, 1147
HphI	GGTGA	2 cut(s)	179, 1084
Hpy166II	GTNNAC	3 cut(s)	183, 192, 984
Hpy188I	TCNGA	7 cut(s)	430, 727, 783, 955, 961, 999, 1054
Hpy188III	TCNNGA	5 cut(s)	35, 285, 498, 572, 613
Hpy8I	GTNNAC	3 cut(s)	183, 192, 984
HpyAV	CCTTC	3 cut(s)	279, 958, 960
HpyCH4III	ACNGT	4 cut(s)	20, 189, 196, 830
HpyCH4V	TGCA	7 cut(s)	116, 391, 692, 931, 1063, 1087, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 350, 654
HpyF3I	CTNAG	4 cut(s)	255, 354, 448, 914
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	8 cut(s)	38, 233, 403, 541, 616, 643, 1063, 1072
HspAI	GCGC	3 cut(s)	455, 457, 673
Ksp22I	TGATCA	2 cut(s)	121, 298
Kzo9I	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
LmnI	GCTCC	2 cut(s)	419, 427
Lsp1109I	GCAGC	9 cut(s)	94, 97, 100, 221, 316, 331, 439, 1112, 1115
LweI	GCATC	3 cut(s)	493, 684, 1096
MaeI	CTAG	2 cut(s)	54, 695
MaeIII	GTNAC	5 cut(s)	92, 236, 290, 707, 833
MalI	GATC	9 cut(s)	33, 123, 300, 359, 484, 531, 623, 780, 996
MboI	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
MhlI	GDGCHC	1 cut(s)	424
MlsI	TGGCCA	2 cut(s)	943, 1122
MluCI	AATT	3 cut(s)	61, 242, 884
MluNI	TGGCCA	2 cut(s)	943, 1122
MlyI	GAGTC	3 cut(s)	49, 965, 989
MmeI	TCCRAC	2 cut(s)	104, 939
Mox20I	TGGCCA	2 cut(s)	943, 1122
MroXI	GAANNNNTTC	2 cut(s)	220, 718
MscI	TGGCCA	2 cut(s)	943, 1122
MseI	TTAA	4 cut(s)	348, 564, 636, 804
MslI	CAYNNNNRTG	1 cut(s)	1073
Msp20I	TGGCCA	2 cut(s)	943, 1122
MspA1I	CMGCKG	4 cut(s)	162, 452, 750, 918
MspI	CCGG	3 cut(s)	213, 311, 1147
MspR9I	CCNGG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	3 cut(s)	113, 350, 654
NdeII	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
NlaIII	CATG	8 cut(s)	38, 233, 403, 541, 616, 643, 1063, 1072
NlaIV	GGNNCC	1 cut(s)	1156
NmeAIII	GCCGAG	2 cut(s)	662, 796
NmuCI	GTSAC	3 cut(s)	236, 290, 707
NsbI	TGCGCA	1 cut(s)	674
NspI	RCATGY	3 cut(s)	233, 643, 1063
PaeI	GCATGC	1 cut(s)	233
PagI	TCATGA	2 cut(s)	34, 612
PauI	GCGCGC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	1102
PdmI	GAANNNNTTC	2 cut(s)	220, 718
PflMI	CCANNNNNTGG	2 cut(s)	86, 415
PleI	GAGTC	3 cut(s)	48, 964, 988
PpsI	GAGTC	3 cut(s)	48, 964, 988
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	1 cut(s)	1156
PspPI	GGNCC	3 cut(s)	588, 733, 1154
PteI	GCGCGC	1 cut(s)	455
PvuII	CAGCTG	2 cut(s)	452, 918
RsaI	GTAC	2 cut(s)	220, 827
RsaNI	GTAC	2 cut(s)	219, 826
RseI	CAYNNNNRTG	1 cut(s)	1073
SacI	GAGCTC	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	982
SaqAI	TTAA	4 cut(s)	348, 564, 636, 804
Sau3AI	GATC	9 cut(s)	31, 121, 298, 357, 482, 529, 621, 778, 994
Sau96I	GGNCC	3 cut(s)	588, 733, 1154
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	3 cut(s)	49, 965, 989
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	493, 684, 1096
SinI	GGWCC	2 cut(s)	733, 1154
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SmlI	CTYRAG	2 cut(s)	838, 848
SmoI	CTYRAG	2 cut(s)	838, 848
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	61, 242, 884
SsiI	CCGC	4 cut(s)	162, 165, 660, 750
SspMI	CTAG	2 cut(s)	54, 695
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	20, 189, 196, 830
TaqI	TCGA	4 cut(s)	497, 528, 624, 983
TaqII	GACCGA	1 cut(s)	1142
TasI	AATT	3 cut(s)	61, 242, 884
TatI	WGTACW	2 cut(s)	218, 825
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	4 cut(s)	348, 564, 636, 804
Tru9I	TTAA	4 cut(s)	348, 564, 636, 804
TscAI	CASTG	3 cut(s)	25, 835, 1046
TseFI	GTSAC	3 cut(s)	236, 290, 707
TseI	GCWGC	9 cut(s)	107, 110, 113, 209, 304, 319, 452, 1100, 1103
Tsp45I	GTSAC	3 cut(s)	236, 290, 707
TspGWI	ACGGA	2 cut(s)	168, 726
TspRI	CASTG	3 cut(s)	25, 835, 1046
Van91I	CCANNNNNTGG	2 cut(s)	86, 415
VpaK11BI	GGWCC	2 cut(s)	733, 1154
XapI	RAATTY	2 cut(s)	61, 242
XceI	RCATGY	3 cut(s)	233, 643, 1063
XmiI	GTMKAC	1 cut(s)	983
XmnI	GAANNNNTTC	2 cut(s)	220, 718
XspI	CTAG	2 cut(s)	54, 695
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.