Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Forward (+)

36176926 .. 36180792

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G416700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAAGAGTACAACCAAATGGATCATGAGAGCTCAGGTGGTAGAGGAAATTTCCTGTACGCCTCACCAAATCTTGGAGGCAACTATGGGAGGGCAAGCCATGATCATCAGATGGGCATCAACGCCTTTCATCTTCAATCGAGCGGTGGTGGTGATTTCCACTCTCCAGGAGGAGCACACCCAATTAATGTCAAAACTGAAGCCAGCACATCCCATCATGGCCATCACAAATTTCAGTACAACAACAACAACAACAACAACAATAATAATCCTCTTCTGTCATCAAGAGGACACCAACCAGTAGTTCAACAACAGCATAATCTGGACCGTCAAAACGATGATCACACCCTGAGCTCCAACGAAGTGGAAGCCATCAAAGCCAAGATCGTCGCCCACCCTCAGTACTCTAACCTCCTGGAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCGTCTGAAGTGGTGGCGCGGCTAACAGCTGCTAGGCAGGAGTTTGAGGCAAGGCAGCGGTCTTCTGTGGCTTCAAGAGAGGCTTCAAAAGATCCAGAACTCGATCAGTTCATGGAAGCTTACTATGATATGTTGGTGAAATATCGAGAGGAGCTAACAAGGCCCATACAAGAAGCCATGGATTTCATGCGGAGGATTGAAACTCAGCTCAACATGCTTGGCAACAATAATGCTCCTCCACTTCGCATCTTCTCACCCTCTGAGGACAAATGCGAAGGACTTGGTTCATCTGAAGAGGAGCAGGAGAATAGTGGTGGAGAAACAGAAGTGCCTGAGATTGATCCAAGAGCTGAAGACAGAGAGCTCAAGAACCACCTGTTGAAAAAGTATAGTGGTTACTTAAGTAGCCTGAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAATTGCCCAAAGATGCCAGGCAGAAGCTTCTCAGTTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCAGAATCGGAGAAGGTGGCATTGGCGGAGTCGACAGGCTTGGATCAGAAGCAAATAAACAATTGGTTCATAAATCAGAGGAAGAGGCACTGGAAACCCTCAGAGGACATGCAGTTCATGGTGATGGATGGCCTACACCCTCAGAATGCGGCCCTGTATATGGATGGACACTACATAGGTGATGGCCACTACCGTCTGGGGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

390

Amino Acids

44.39

Weight (kDa)

6.13

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	74, 442
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	995
AccII	CGCG	1 cut(s)	469
AciI	CCGC	6 cut(s)	144, 469, 508, 640, 989, 1112
AclWI	GGATC	4 cut(s)	30, 536, 785, 1014
AcoI	YGGCCR	3 cut(s)	220, 953, 1147
AcsI	RAATTY	2 cut(s)	49, 230
AcuI	CTGAAG	6 cut(s)	219, 477, 762, 822, 881, 948
AfaI	GTAC	4 cut(s)	11, 59, 239, 404
AfiI	CCNNNNNNNGG	3 cut(s)	74, 442, 1123
AflII	CTTAAG	1 cut(s)	850
AgsI	TTSAA	6 cut(s)	137, 308, 525, 537, 650, 832
AjnI	CCWGG	3 cut(s)	166, 414, 911
AjuI	GAANNNNNNNTTGG	4 cut(s)	288, 320, 968, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	1061, 1093
Alw21I	GWGCWC	5 cut(s)	35, 178, 356, 451, 816
AlwI	GGATC	4 cut(s)	30, 536, 785, 1014
AoxI	GGCC	7 cut(s)	220, 611, 953, 1093, 1113, 1147, 1163
ApeKI	GCWGC	2 cut(s)	479, 505
ApoI	RAATTY	2 cut(s)	49, 230
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	4 cut(s)	325, 612, 1114, 1163
AsuHPI	GGTGA	6 cut(s)	57, 164, 598, 696, 1096, 1154
AvaII	GGWCC	1 cut(s)	325
BalI	TGGCCA	3 cut(s)	222, 955, 1149
BanII	GRGCYC	4 cut(s)	35, 356, 451, 816
BbsI	GAAGAC	2 cut(s)	504, 810
Bbv12I	GWGCWC	5 cut(s)	35, 178, 356, 451, 816
BbvI	GCAGC	2 cut(s)	466, 517
BccI	CCATC	8 cut(s)	106, 222, 231, 380, 1081, 1085, 1121, 1139
BceAI	ACGGC	1 cut(s)	1150
BciT130I	CCWGG	3 cut(s)	168, 416, 913
BclI	TGATCA	2 cut(s)	103, 340
BfaI	CTAG	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	850
BisI	GCNGC	4 cut(s)	470, 480, 506, 1113
BlsI	GCNGC	4 cut(s)	471, 481, 507, 1114
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	168, 416, 913
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	4 cut(s)	325, 612, 1114, 1163
BmiI	GGNNCC	1 cut(s)	1164
BmrFI	CCNGG	3 cut(s)	168, 416, 913
BmsI	GCATC	3 cut(s)	126, 705, 898
BpiI	GAAGAC	2 cut(s)	504, 810
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	34, 350
BpuEI	CTTGAG	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 442, 1123
Bse1I	ACTGG	2 cut(s)	299, 1058
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	168, 416, 913
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	209, 1096, 1132
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	3 cut(s)	74, 442, 1123
BseMII	CTCAG	9 cut(s)	48, 341, 413, 668, 702, 774, 940, 1077, 1118
BseNI	ACTGG	2 cut(s)	299, 1058
BseRI	GAGGAG	4 cut(s)	186, 614, 675, 761
BseXI	GCAGC	2 cut(s)	466, 517
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	7 cut(s)	222, 613, 955, 1095, 1115, 1149, 1165
BsiHKAI	GWGCWC	5 cut(s)	35, 178, 356, 451, 816
BslI	CCNNNNNNNGG	3 cut(s)	74, 442, 1123
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	7 cut(s)	222, 613, 955, 1095, 1115, 1149, 1165
Bsp1286I	GDGCHC	5 cut(s)	35, 178, 356, 451, 816
Bsp143I	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	6 cut(s)	144, 469, 508, 640, 989, 1112
BspANI	GGCC	7 cut(s)	222, 613, 955, 1095, 1115, 1149, 1165
BspCNI	CTCAG	9 cut(s)	47, 342, 412, 667, 703, 775, 939, 1076, 1117
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	1164
BspPI	GGATC	4 cut(s)	30, 536, 785, 1014
BspTI	CTTAAG	1 cut(s)	850
BsrBI	CCGCTC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	299, 1058
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	168, 416, 913
Bst4CI	ACNGT	2 cut(s)	329, 1157
Bst6I	CTCTTC	3 cut(s)	279, 738, 1040
BstAFI	CTTAAG	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	97, 205
BstDEI	CTNAG	9 cut(s)	34, 350, 399, 654, 711, 783, 926, 1063, 1104
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	209, 1096, 1132
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	8 cut(s)	25, 106, 343, 387, 544, 556, 793, 1009
BstMBI	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 610, 664
BstNI	CCWGG	3 cut(s)	168, 416, 913
BstNSI	RCATGY	2 cut(s)	667, 1075
BstSCI	CCNGG	3 cut(s)	166, 414, 911
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	466, 517
BstV2I	GAAGAC	2 cut(s)	504, 810
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	7 cut(s)	222, 613, 955, 1095, 1115, 1149, 1165
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	209, 1096, 1132
BtsIMutI	CAGTG	1 cut(s)	1051
Cac8I	GCNNGC	2 cut(s)	97, 205
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	4 cut(s)	325, 612, 1114, 1163
Csp6I	GTAC	4 cut(s)	10, 58, 238, 403
CviQI	GTAC	4 cut(s)	10, 58, 238, 403
DdeI	CTNAG	9 cut(s)	34, 350, 399, 654, 711, 783, 926, 1063, 1104
DpnI	GATC	8 cut(s)	24, 105, 342, 386, 543, 555, 792, 1008
DpnII	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
EaeI	YGGCCR	3 cut(s)	220, 953, 1147
Eam1104I	CTCTTC	3 cut(s)	279, 738, 1040
EarI	CTCTTC	3 cut(s)	279, 738, 1040
EciI	GGCGGA	1 cut(s)	1004
Ecl136II	GAGCTC	4 cut(s)	33, 354, 449, 814
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	4 cut(s)	35, 356, 451, 816
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	4 cut(s)	33, 354, 449, 814
Eco57I	CTGAAG	6 cut(s)	219, 477, 762, 822, 881, 948
EcoICRI	GAGCTC	4 cut(s)	33, 354, 449, 814
EcoRII	CCWGG	3 cut(s)	166, 414, 911
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	4 cut(s)	35, 356, 451, 816
ErhI	CCWWGG	1 cut(s)	627
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FbaI	TGATCA	2 cut(s)	103, 340
FblI	GTMKAC	1 cut(s)	995
Fnu4HI	GCNGC	4 cut(s)	470, 480, 506, 1113
FokI	GGATG	3 cut(s)	196, 1103, 1139
FriOI	GRGCYC	4 cut(s)	35, 356, 451, 816
Fsp4HI	GCNGC	4 cut(s)	470, 480, 506, 1113
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	4 cut(s)	470, 480, 506, 1113
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	7 cut(s)	222, 613, 955, 1095, 1115, 1149, 1165
HhaI	GCGC	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	996
HindII	GTYRAC	1 cut(s)	996
HindIII	AAGCTT	3 cut(s)	420, 567, 920
HinfI	GANTC	2 cut(s)	968, 992
HphI	GGTGA	6 cut(s)	57, 164, 598, 696, 1096, 1154
Hpy166II	GTNNAC	1 cut(s)	996
Hpy188III	TCNNGA	7 cut(s)	26, 285, 323, 525, 545, 596, 817
Hpy8I	GTNNAC	1 cut(s)	996
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	719, 970, 972
HpyCH4III	ACNGT	2 cut(s)	329, 1157
HpyCH4V	TGCA	2 cut(s)	943, 1075
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 610, 664
HpyF3I	CTNAG	9 cut(s)	34, 350, 399, 654, 711, 783, 926, 1063, 1104
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	2 cut(s)	103, 340
Kzo9I	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
LmnI	GCTCC	7 cut(s)	173, 359, 446, 454, 601, 688, 748
Lsp1109I	GCAGC	2 cut(s)	466, 517
LweI	GCATC	3 cut(s)	126, 705, 898
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	8 cut(s)	24, 105, 342, 386, 543, 555, 792, 1008
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
MboII	GAAGA	9 cut(s)	17, 125, 266, 504, 691, 755, 815, 898, 1057
MfeI	CAATTG	1 cut(s)	1024
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	5 cut(s)	35, 178, 356, 451, 816
MlsI	TGGCCA	3 cut(s)	222, 955, 1149
MluCI	AATT	5 cut(s)	49, 183, 230, 896, 1024
MluNI	TGGCCA	3 cut(s)	222, 955, 1149
MlyI	GAGTC	1 cut(s)	1001
MmeI	TCCRAC	1 cut(s)	381
Mox20I	TGGCCA	3 cut(s)	222, 955, 1149
MscI	TGGCCA	3 cut(s)	222, 955, 1149
MseI	TTAA	2 cut(s)	186, 851
MslI	CAYNNNNRTG	1 cut(s)	1085
Msp20I	TGGCCA	3 cut(s)	222, 955, 1149
MspA1I	CMGCKG	2 cut(s)	479, 508
MspCI	CTTAAG	1 cut(s)	850
MspR9I	CCNGG	3 cut(s)	168, 416, 913
MunI	CAATTG	1 cut(s)	1024
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	3 cut(s)	168, 416, 913
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	377, 610, 664
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
NlaIV	GGNNCC	1 cut(s)	1164
NspI	RCATGY	2 cut(s)	667, 1075
PagI	TCATGA	1 cut(s)	25
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	1 cut(s)	968
PflMI	CCANNNNNTGG	2 cut(s)	74, 442
PfoI	TCCNGGA	2 cut(s)	166, 414
PkrI	GCNGC	4 cut(s)	471, 481, 507, 1114
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	4 cut(s)	35, 356, 451, 816
Psp6I	CCWGG	3 cut(s)	166, 414, 911
PspGI	CCWGG	3 cut(s)	166, 414, 911
PspN4I	GGNNCC	1 cut(s)	1164
PspPI	GGNCC	4 cut(s)	325, 612, 1114, 1163
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	4 cut(s)	11, 59, 239, 404
RsaNI	GTAC	4 cut(s)	10, 58, 238, 403
RseI	CAYNNNNRTG	1 cut(s)	1085
SacI	GAGCTC	4 cut(s)	35, 356, 451, 816
SalI	GTCGAC	1 cut(s)	994
SaqAI	TTAA	2 cut(s)	186, 851
SatI	GCNGC	4 cut(s)	470, 480, 506, 1113
Sau3AI	GATC	8 cut(s)	22, 103, 340, 384, 541, 553, 790, 1006
Sau96I	GGNCC	4 cut(s)	325, 612, 1114, 1163
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	3 cut(s)	168, 416, 913
SduI	GDGCHC	5 cut(s)	35, 178, 356, 451, 816
SfaNI	GCATC	3 cut(s)	126, 705, 898
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	2 cut(s)	815, 850
SmoI	CTYRAG	2 cut(s)	815, 850
Sse9I	AATT	5 cut(s)	49, 183, 230, 896, 1024
SsiI	CCGC	6 cut(s)	144, 469, 508, 640, 989, 1112
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	4 cut(s)	35, 356, 451, 816
StyD4I	CCNGG	3 cut(s)	166, 414, 911
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	329, 1157
TaqI	TCGA	4 cut(s)	140, 552, 595, 995
TasI	AATT	5 cut(s)	49, 183, 230, 896, 1024
TatI	WGTACW	3 cut(s)	9, 237, 402
TauI	GCSGC	2 cut(s)	472, 1115
TfiI	GAWTC	1 cut(s)	968
Tru1I	TTAA	2 cut(s)	186, 851
Tru9I	TTAA	2 cut(s)	186, 851
TscAI	CASTG	1 cut(s)	1058
TseI	GCWGC	2 cut(s)	479, 505
TspDTI	ATGAA	6 cut(s)	119, 550, 625, 726, 1021, 1069
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	1058
Van91I	CCANNNNNTGG	2 cut(s)	74, 442
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	325
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	2 cut(s)	49, 230
XceI	RCATGY	2 cut(s)	667, 1075
XmiI	GTMKAC	1 cut(s)	995
XspI	CTAG	1 cut(s)	483
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.