Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Forward (+)

6111898 .. 6115219

Gene Structure 3322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1075200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAAGACTACAACAATCAAATGGATCATGAGAGTTCAGGTGGTCGGGGAAACTTCCTCTACGCCTCACCAAACCTTGGAGGAAATTATGGGAGAGCTGCAAGTGATCATCAGATGGGAATCAACACCTTTCATCTTCAATCAAGCGGCGGTGGAGGCGGCGGCGGCAGCGGCGATCAGTGTAATTTTCAGTCTCCAGGAACACACCCAATTAATGTGAAGACCGAAGCCACCACATCACAACATGGCCACCCAAAATTTCAGTACAACAATAACAATAATAATCATCATCTTGTTTCTTCATCAAGAGGGCACCAACCAGTTGTTCATCAGCTACAGCATAATTTGGATCTTCAAAACGATGATCATAGCCTGAGCTCCAACGAAGTTGAAGCCATCAAAGCCAAGATCATCGCCCACCCTCAGTACTCTAACCTCGTGGAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCATCTGATGTTGTGCCTCGACTCTCAGTTGCCAGACAGGAGTTTGAGGCACGACAGCGATCTTCAGGAACTTCAAGAGAAACTTCAAAAGACCCAGAACTCGATCAGTTCATGGAAGCATACTACGATATGCTGGTGAAATATCGTGAAGAACTAACAAGGCCAATACAAGAAGCCATGGATTTCATGAGAAGGATTGAAACTCAGCTTAACATGCTTGGAAATAATAATAATGCTCCTCCTCTTCGAATCTTCTCACCCTCTGGACAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

250

Amino Acids

27.7

Weight (kDa)

5.87

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	132 - 174	3.9e-21	KNOX1 domain
KNOX2	PF03791	186 - 231	6.1e-25	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccB7I	CCANNNNNTGG	2 cut(s)	77, 466
AciI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 171
AclWI	GGATC	2 cut(s)	33, 357
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	2 cut(s)	266, 428
AfiI	CCNNNNNNNGG	2 cut(s)	77, 466
AgsI	TTSAA	6 cut(s)	140, 356, 392, 549, 561, 674
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	6 cut(s)	98, 334, 378, 446, 473, 682
AluI	AGCT	6 cut(s)	98, 334, 378, 446, 473, 682
Alw21I	GWGCWC	2 cut(s)	380, 475
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	33, 357
AoxI	GGCC	2 cut(s)	247, 635
ApeKI	GCWGC	2 cut(s)	98, 168
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	60, 622, 723
AsuII	TTCGAA	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	380, 475
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	12, 227
Bbv12I	GWGCWC	2 cut(s)	380, 475
BbvI	GCAGC	2 cut(s)	85, 180
BccI	CCATC	3 cut(s)	109, 404, 484
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	2 cut(s)	106, 364
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	335
BisI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 172
BlsI	GCNGC	7 cut(s)	100, 149, 161, 164, 167, 170, 173
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	12, 227
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	721
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	76, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 466
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	76, 651
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	77, 466
BseMII	CTCAG	4 cut(s)	365, 437, 513, 692
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	702, 705
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	85, 180
BshFI	GGCC	2 cut(s)	249, 637
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	380, 475
BslI	CCNNNNNNNGG	2 cut(s)	77, 466
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	249, 637
Bsp119I	TTCGAA	1 cut(s)	721
Bsp1286I	GDGCHC	3 cut(s)	315, 380, 475
Bsp143I	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 171
BspANI	GGCC	2 cut(s)	249, 637
BspCNI	CTCAG	4 cut(s)	366, 436, 512, 691
BspHI	TCATGA	2 cut(s)	28, 660
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	33, 357
BspT104I	TTCGAA	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	76, 651
BssMI	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	76, 651
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	721
BstDEI	CTNAG	4 cut(s)	374, 423, 499, 678
BstDSI	CCRYGG	1 cut(s)	651
BstKTI	GATC	8 cut(s)	28, 109, 178, 352, 367, 411, 536, 580
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 171, 401, 688
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	85, 180
BstV2I	GAAGAC	2 cut(s)	12, 227
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	249, 637
BtgI	CCRYGG	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	185
CciI	TCATGA	2 cut(s)	28, 660
Csp6I	GTAC	2 cut(s)	265, 427
CviAII	CATG	7 cut(s)	29, 245, 451, 586, 652, 661, 688
CviQI	GTAC	2 cut(s)	265, 427
DdeI	CTNAG	4 cut(s)	374, 423, 499, 678
DpnI	GATC	8 cut(s)	27, 108, 177, 351, 366, 410, 535, 579
DpnII	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Ecl136II	GAGCTC	2 cut(s)	378, 473
Eco130I	CCWWGG	2 cut(s)	76, 651
Eco24I	GRGCYC	2 cut(s)	380, 475
Eco53kI	GAGCTC	2 cut(s)	378, 473
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	2 cut(s)	378, 473
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	76, 651
EcoT38I	GRGCYC	2 cut(s)	380, 475
ErhI	CCWWGG	2 cut(s)	76, 651
FaeI	CATG	7 cut(s)	32, 248, 454, 589, 655, 664, 691
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FatI	CATG	7 cut(s)	28, 244, 450, 585, 651, 660, 687
FbaI	TGATCA	2 cut(s)	106, 364
Fnu4HI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 172
FriOI	GRGCYC	2 cut(s)	380, 475
Fsp4HI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 172
GluI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 172
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	249, 637
Hin1II	CATG	7 cut(s)	32, 248, 454, 589, 655, 664, 691
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	3 cut(s)	120, 495, 723
HphI	GGTGA	3 cut(s)	60, 622, 723
Hpy188I	TCNGA	2 cut(s)	114, 481
Hpy188III	TCNNGA	7 cut(s)	29, 306, 540, 549, 620, 661, 738
HpyAV	CCTTC	1 cut(s)	660
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 171, 401, 688
HpyF3I	CTNAG	4 cut(s)	374, 423, 499, 678
Hsp92II	CATG	7 cut(s)	32, 248, 454, 589, 655, 664, 691
Ksp22I	TGATCA	2 cut(s)	106, 364
Kzo9I	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
LmnI	GCTCC	4 cut(s)	383, 470, 478, 715
Lsp1109I	GCAGC	2 cut(s)	85, 180
MalI	GATC	8 cut(s)	27, 108, 177, 351, 366, 410, 535, 579
MboI	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
MboII	GAAGA	9 cut(s)	17, 128, 232, 291, 344, 528, 635, 710, 718
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	3 cut(s)	315, 380, 475
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	85, 184, 210, 257, 343
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	213, 684
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 171, 401, 688
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
NlaIII	CATG	7 cut(s)	32, 248, 454, 589, 655, 664, 691
NlaIV	GGNNCC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	721
PagI	TCATGA	2 cut(s)	28, 660
PfeI	GAWTC	2 cut(s)	120, 723
PflMI	CCANNNNNTGG	2 cut(s)	77, 466
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	7 cut(s)	100, 149, 161, 164, 167, 170, 173
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	380, 475
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	266, 428
RsaNI	GTAC	2 cut(s)	265, 427
SacI	GAGCTC	2 cut(s)	380, 475
SaqAI	TTAA	2 cut(s)	213, 684
SatI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 172
Sau3AI	GATC	8 cut(s)	25, 106, 175, 349, 364, 408, 533, 577
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	3 cut(s)	315, 380, 475
SfcI	CTRYAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	721
Sse9I	AATT	5 cut(s)	85, 184, 210, 257, 343
SsiI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 171
SstI	GAGCTC	2 cut(s)	380, 475
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	76, 651
TaqI	TCGA	3 cut(s)	493, 576, 721
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	85, 184, 210, 257, 343
TatI	WGTACW	2 cut(s)	264, 426
TauI	GCSGC	5 cut(s)	150, 162, 165, 168, 174
TfiI	GAWTC	2 cut(s)	120, 723
Tru1I	TTAA	2 cut(s)	213, 684
Tru9I	TTAA	2 cut(s)	213, 684
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	2 cut(s)	98, 168
TspDTI	ATGAA	5 cut(s)	122, 291, 317, 574, 649
TspRI	CASTG	1 cut(s)	185
Van91I	CCANNNNNTGG	2 cut(s)	77, 466
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	691
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.