Rh6AG493000

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
66940332 .. 66945123
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG493000.1

Sequence Viewer

Length: 1185 bp
ATGGAGGAATACAATAATAGTAATGAAATGGATCATGAGAATCAAGGCACTCCTAGAGGAAATTTCCTCTACGCTTCTCCAAATCTTGGAGGCAACTATGGTAGAGCTGCTGCTGCTGCTGCAGGTGATCATAATCAGCAGATCAACACCTTTCATCTTCAATCAAGCGGTGGTGAGTGTTTTCCGTCAACACAACCAACCGTGAAGACCGAAGCAGCCGGTAGTACTTCCCAGCATGCTCATCACCACCACCACAAATTTCATCATCCTCAGTTTCCTCCTCCTTCATTAATATTGTCAAGAGGGCACAATGATCAGATACCGGTTCAGCAGCAGCAGCACATAGAAAACGAGAATGAAGTAGAGGCCATCAAAGCTAAGATCATCGCTCACCCTCACTACTCTAACCTCTTGCAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCTTCTGAAGTTGTGGCTCGTCTCTCAGCTGCGCGCCAAGAGTTTGAAGCACGACAGCGATCTTCAGTCAGTTCGAGAGATGCTTCTTCAAAAGACCCCGAACTCGATCAGTTCATGGAAGCTTACTATGATATGCTGGTTAAGTATCGGGAGGAACTAACAAGGCCCATACAAGAAGCAATGGATTTCATGAGGAAGATTGAAACTCAGCTTAACATGCTTGGCAATAACAGCAACACTACTCCTCTGCGCATCTTCTCGGCCTCTGCACTAGAGGACAAGTGTGACGGAAATGGTTCATCTGAAGAGGACCAAGACAACAACAGCGGTGGAGAAACAGAAGTAGCCGAGATTGATCCGAGAGCTGAAGACAGAGAGCTTAAGAACCACCTGTTAAGAAAGTACAGTGGTTACTTGAGTAGCCTCAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGAAAATTGCCCAAAGACGCCCGGCAGAAGCTTCTCAGTTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCGGAATCGGAGAAGGTGGCATTGGCAGAGTCAACAGGTTTGGATCAGAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCGGAGGACATGCAGTTCATGGTGATGGATGGGTTGCATCCACAGAATGCAGCAGCCCTCTATATGGATGGCCACTACATTGGTGATGGTCATTACCGTCTCGGTCCCTAA

Protein Analysis

394

Amino Acids

44.81

Weight (kDa)

6.09

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 123 - 165 6.8e-23 KNOX1 domain
KNOX2 PF03791 179 - 223 1.7e-24 KNOX2 domain
ELK PF03789 275 - 296 4e-10 ELK domain
Homeobox_KN PF05920 315 - 354 6.3e-19 Homeobox KN domain
Homeodomain PF00046 322 - 355 1.3e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
Acc16I TGCGCA 1 cut(s) 698
Acc36I ACCTGC 1 cut(s) 113
AccB7I CCANNNNNTGG 2 cut(s) 86, 439
AccII CGCG 1 cut(s) 481
AciI CCGC 2 cut(s) 168, 774
AclWI GGATC 3 cut(s) 39, 797, 1026
AcoI YGGCCR 2 cut(s) 965, 1144
AcsI RAATTY 2 cut(s) 61, 257
AcuI CTGAAG 4 cut(s) 474, 495, 771, 834
AcyI GRCGYC 1 cut(s) 921
AfaI GTAC 2 cut(s) 226, 851
AfiI CCNNNNNNNGG 3 cut(s) 86, 439, 1138
AflII CTTAAG 1 cut(s) 827
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 4 cut(s) 161, 494, 537, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 980, 1012
AloI GAACNNNNNNTCC 2 cut(s) 1073, 1105
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 473, 1178
AlwI GGATC 3 cut(s) 39, 797, 1026
AoxI GGCC 5 cut(s) 366, 611, 708, 965, 1144
ApoI RAATTY 2 cut(s) 61, 257
AseI ATTAAT 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 322
Asp700I GAANNNNTTC 1 cut(s) 742
AspLEI GCGC 3 cut(s) 481, 483, 699
AspS9I GGNCC 3 cut(s) 612, 757, 1178
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 6 cut(s) 137, 185, 236, 383, 1108, 1169
AvaII GGWCC 2 cut(s) 757, 1178
BaeGI GKGCMC 1 cut(s) 309
BalI TGGCCA 2 cut(s) 967, 1146
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 212, 822
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 6 cut(s) 377, 1081, 1093, 1097, 1136, 1154
BclI TGATCA 2 cut(s) 127, 313
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 2 cut(s) 473, 1178
BfaI CTAG 2 cut(s) 54, 719
BfmI CTRYAG 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 827
BfuAI ACCTGC 1 cut(s) 113
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 925
Bme18I GGWCC 2 cut(s) 757, 1178
BmgT120I GGNCC 3 cut(s) 612, 757, 1178
BmiI GGNNCC 1 cut(s) 1180
BmrFI CCNGG 1 cut(s) 925
BmsI GCATC 3 cut(s) 517, 708, 1120
BpiI GAAGAC 2 cut(s) 212, 822
BpuEI CTTGAG 2 cut(s) 857, 883
BpuMI CCSGG 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 921
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 439, 1138
Bse118I RCCGGY 2 cut(s) 218, 322
Bse1I ACTGG 2 cut(s) 1043, 1070
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 132
BseGI GGATG 4 cut(s) 265, 1108, 1111, 1147
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 86, 439, 1138
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 4 cut(s) 284, 486, 668, 952
BseNI ACTGG 2 cut(s) 1043, 1070
BsePI GCGCGC 1 cut(s) 479
BseRI GAGGAG 2 cut(s) 270, 681
BseSI GKGCMC 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 5 cut(s) 368, 613, 710, 967, 1146
BshTI ACCGGT 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 3 cut(s) 219, 323, 925
BslFI GGGAC 1 cut(s) 1164
BslI CCNNNNNNNGG 3 cut(s) 86, 439, 1138
BsmAI GTCTC 2 cut(s) 473, 1178
BsmBI CGTCTC 2 cut(s) 473, 1178
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 5 cut(s) 368, 613, 710, 967, 1146
Bsp1286I GDGCHC 2 cut(s) 309, 448
Bsp143I GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
BspACI CCGC 2 cut(s) 168, 774
BspANI GGCC 5 cut(s) 368, 613, 710, 967, 1146
BspCNI CTCAG 4 cut(s) 283, 485, 667, 951
BspFNI CGCG 1 cut(s) 481
BspHI TCATGA 2 cut(s) 34, 636
BspLI GGNNCC 1 cut(s) 1180
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 3 cut(s) 39, 797, 1026
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 2 cut(s) 218, 322
BsrI ACTGG 2 cut(s) 1043, 1070
BssAI RCCGGY 2 cut(s) 218, 322
BssHII GCGCGC 1 cut(s) 479
BssMI GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
BssNI GRCGYC 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 202, 854, 1172
Bst6I CTCTTC 2 cut(s) 747, 1052
BstACI GRCGYC 1 cut(s) 921
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 237, 417, 481
BstDEI CTNAG 5 cut(s) 270, 378, 472, 654, 938
BstF5I GGATG 4 cut(s) 265, 1108, 1111, 1147
BstFNI CGCG 1 cut(s) 481
BstHHI GCGC 3 cut(s) 481, 483, 699
BstKTI GATC 9 cut(s) 34, 130, 144, 316, 384, 509, 556, 805, 1021
BstMAI GTCTC 2 cut(s) 473, 1178
BstMBI GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
BstMWI GCNNNNNNNGC 7 cut(s) 113, 116, 119, 337, 374, 664, 678
BstNSI RCATGY 3 cut(s) 239, 667, 1087
BstSCI CCNGG 1 cut(s) 923
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 481
BstV2I GAAGAC 2 cut(s) 212, 822
BstXI CCANNNNNNTGG 1 cut(s) 1154
BsuRI GGCC 5 cut(s) 368, 613, 710, 967, 1146
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 4 cut(s) 265, 1108, 1111, 1147
BtsIMutI CAGTG 2 cut(s) 859, 1063
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 237, 417, 481
CciI TCATGA 2 cut(s) 34, 636
CfoI GCGC 3 cut(s) 481, 483, 699
Cfr10I RCCGGY 2 cut(s) 218, 322
Cfr13I GGNCC 3 cut(s) 612, 757, 1178
CseI GACGC 1 cut(s) 929
Csp6I GTAC 2 cut(s) 225, 850
CspAI ACCGGT 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 8 cut(s) 35, 236, 424, 562, 637, 664, 1084, 1093
CviQI GTAC 2 cut(s) 225, 850
DdeI CTNAG 5 cut(s) 270, 378, 472, 654, 938
DpnI GATC 9 cut(s) 33, 129, 143, 315, 383, 508, 555, 804, 1020
DpnII GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
EaeI YGGCCR 2 cut(s) 965, 1144
Eam1104I CTCTTC 2 cut(s) 747, 1052
EarI CTCTTC 2 cut(s) 747, 1052
Ecl136II GAGCTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 757, 1178
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 4 cut(s) 474, 495, 771, 834
EcoICRI GAGCTC 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 448
Esp3I CGTCTC 2 cut(s) 473, 1178
FaeI CATG 8 cut(s) 38, 239, 427, 565, 640, 667, 1087, 1096
FaqI GGGAC 1 cut(s) 1164
FatI CATG 8 cut(s) 34, 235, 423, 561, 636, 663, 1083, 1092
FbaI TGATCA 2 cut(s) 127, 313
FokI GGATG 4 cut(s) 252, 1098, 1115, 1154
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 2 cut(s) 54, 719
FspI TGCGCA 1 cut(s) 698
GlaI GCGC 3 cut(s) 480, 482, 698
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 5 cut(s) 368, 613, 710, 967, 1146
HapII CCGG 3 cut(s) 219, 323, 925
HgaI GACGC 1 cut(s) 929
HhaI GCGC 3 cut(s) 481, 483, 699
Hin1I GRCGYC 1 cut(s) 921
Hin1II CATG 8 cut(s) 38, 239, 427, 565, 640, 667, 1087, 1096
Hin6I GCGC 3 cut(s) 479, 481, 697
HinP1I GCGC 3 cut(s) 479, 481, 697
HincII GTYRAC 2 cut(s) 189, 1008
HindII GTYRAC 2 cut(s) 189, 1008
HindIII AAGCTT 3 cut(s) 417, 567, 932
HinfI GANTC 3 cut(s) 40, 980, 1004
HpaII CCGG 3 cut(s) 219, 323, 925
HphI GGTGA 6 cut(s) 137, 185, 236, 383, 1108, 1169
Hpy166II GTNNAC 2 cut(s) 189, 1008
Hpy188I TCNGA 8 cut(s) 318, 454, 751, 807, 979, 985, 1023, 1078
Hpy188III TCNNGA 5 cut(s) 35, 300, 522, 596, 637
Hpy8I GTNNAC 2 cut(s) 189, 1008
HpyAV CCTTC 4 cut(s) 294, 459, 982, 984
HpyCH4III ACNGT 3 cut(s) 202, 854, 1172
HpyCH4V TGCA 7 cut(s) 122, 415, 716, 955, 1087, 1111, 1124
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 116, 119, 337, 374, 664, 678
HpyF3I CTNAG 5 cut(s) 270, 378, 472, 654, 938
Hsp92I GRCGYC 1 cut(s) 921
Hsp92II CATG 8 cut(s) 38, 239, 427, 565, 640, 667, 1087, 1096
HspAI GCGC 3 cut(s) 479, 481, 697
Ksp22I TGATCA 2 cut(s) 127, 313
Kzo9I GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
LmnI GCTCC 2 cut(s) 443, 451
LweI GCATC 3 cut(s) 517, 708, 1120
MaeI CTAG 2 cut(s) 54, 719
MaeIII GTNAC 2 cut(s) 731, 857
MalI GATC 9 cut(s) 33, 129, 143, 315, 383, 508, 555, 804, 1020
MboI GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
MhlI GDGCHC 2 cut(s) 309, 448
MlsI TGGCCA 2 cut(s) 967, 1146
MluCI AATT 3 cut(s) 61, 257, 908
MluNI TGGCCA 2 cut(s) 967, 1146
MlyI GAGTC 1 cut(s) 1013
Mox20I TGGCCA 2 cut(s) 967, 1146
MroXI GAANNNNTTC 1 cut(s) 742
MscI TGGCCA 2 cut(s) 967, 1146
MseI TTAA 5 cut(s) 290, 588, 660, 828, 842
MslI CAYNNNNRTG 1 cut(s) 1097
Msp20I TGGCCA 2 cut(s) 967, 1146
MspA1I CMGCKG 2 cut(s) 476, 774
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 3 cut(s) 219, 323, 925
MspR9I CCNGG 1 cut(s) 925
Mva1269I GAATGC 1 cut(s) 1126
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 113, 116, 119, 337, 374, 664, 678
NciI CCSGG 1 cut(s) 925
NdeII GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
NlaIII CATG 8 cut(s) 38, 239, 427, 565, 640, 667, 1087, 1096
NlaIV GGNNCC 1 cut(s) 1180
NmeAIII GCCGAG 2 cut(s) 686, 820
NmuCI GTSAC 1 cut(s) 731
NsbI TGCGCA 1 cut(s) 698
NspI RCATGY 3 cut(s) 239, 667, 1087
PaeI GCATGC 1 cut(s) 239
PagI TCATGA 2 cut(s) 34, 636
PaqCI CACCTGC 1 cut(s) 113
PauI GCGCGC 1 cut(s) 479
PctI GAATGC 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 742
PfeI GAWTC 2 cut(s) 40, 980
PflMI CCANNNNNTGG 2 cut(s) 86, 439
PinAI ACCGGT 1 cut(s) 322
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
PshBI ATTAAT 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 1180
PspPI GGNCC 3 cut(s) 612, 757, 1178
PstI CTGCAG 1 cut(s) 124
PteI GCGCGC 1 cut(s) 479
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 226, 851
RsaNI GTAC 2 cut(s) 225, 850
RseI CAYNNNNRTG 1 cut(s) 1097
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 290, 588, 660, 828, 842
Sau3AI GATC 9 cut(s) 31, 127, 141, 313, 381, 506, 553, 802, 1018
Sau96I GGNCC 3 cut(s) 612, 757, 1178
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 1013
ScrFI CCNGG 1 cut(s) 925
SduI GDGCHC 2 cut(s) 309, 448
SfaNI GCATC 3 cut(s) 517, 708, 1120
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 757, 1178
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 3 cut(s) 827, 862, 872
SmoI CTYRAG 3 cut(s) 827, 862, 872
SphI GCATGC 1 cut(s) 239
Sse9I AATT 3 cut(s) 61, 257, 908
SsiI CCGC 2 cut(s) 168, 774
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 54, 719
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 923
TaaI ACNGT 3 cut(s) 202, 854, 1172
TaqI TCGA 2 cut(s) 521, 552
TaqII GACCGA 2 cut(s) 224, 1166
TasI AATT 3 cut(s) 61, 257, 908
TatI WGTACW 2 cut(s) 224, 849
TfiI GAWTC 2 cut(s) 40, 980
Tru1I TTAA 5 cut(s) 290, 588, 660, 828, 842
Tru9I TTAA 5 cut(s) 290, 588, 660, 828, 842
TscAI CASTG 2 cut(s) 859, 1070
TseFI GTSAC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 731
TspGWI ACGGA 2 cut(s) 174, 750
TspRI CASTG 2 cut(s) 859, 1070
Van91I CCANNNNNTGG 2 cut(s) 86, 439
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 757, 1178
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 2 cut(s) 61, 257
XceI RCATGY 3 cut(s) 239, 667, 1087
XmnI GAANNNNTTC 1 cut(s) 742
XspI CTAG 2 cut(s) 54, 719
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.