Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Forward (+)

3605628 .. 3609567

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAAGACTACAACAATCAAATGGATCATGAGAGTTCGGGTGGTAGGGGAAACTTCCTCTACGCCTCACCAAACCTTGGAGGAAATTATGGGAGAGCTGCAAGTGATCATCAGATGGGGATCAACACCTTTCATCTTCAGTCAAGCGGCGGTGGAGGCGGCGGCGGCAGCGGTGATCAGTGTAATTTTCAGTCTCCAGGAACACACCCAATTAATGTGAAGACCGAAGCCACCACATCACAGCATGGCCACCAAAAATTTCAGTACAACAACAACAATAATAATCATCTTGTTTCTTCATCAAGAGGGCACCAACCAGTTGTTCATCAGCTACAGAATAATTTGAATCTTCTAAACGACGATCACAGCCTGAGCTCCAACGAAGTTGAAGCCATCAAAGCCAAGATCATCGCCCACCCTCAGTACTCTAACCTCTTGGAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCGTCTGATGTTATGGCTCGGCTCTCAGTTGCTAGGCAAGAGTTTGAGGCACGACAGCGGTCTTCTGGGACTTCAAGAGAGACTTCAAAAGACCCAGAACTGGATCAGTTCATGGAAGCTTACTACGATATGCTGGTTAAATATCGTGAAGAACTAACAAGGCCAATACAAGAAGCCATGGATTTCATGAGGAGGATTGAAACTCAGCTTAACATGCTTGGAAATAATAATAATGCTCCTCCACTTCGGATCTTCTCACCCTCTGAGGACAAGTGTGAGGGAATTGGTTCATCTGAAGAGGAGCAGGAGAATAGTGGTGGAGAAACAGAAGTGCCTGAGATTGATCCAAGAGCTGAAGACAGAGAGCTCAAGAATCACCTGCTGAGAAAGTATAGTGGTTACTTAAGTAGCCTGAAGCAAGAGCTTTCGAAGAAAAAGAAGAAAGGGAAATTGCCCAAAGATGCCAGGCAGAAGCTCCTTAGTTGGTGGGAGCTACATTACAAGTGGCCATATCCTTCGGAATCGGAGAAGGTGGCTTTGGCGGAGTCTACGGGTTTGGATCAGAAACAAATAAACAATTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCTTCCGAGGACATGCAGTTTATGGTGATGGATGGCCTACACCCACAGAATGCAGCCCTCTATATGGATGGACACTACATAGGTGACGGTCACTACCGTCTCGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

398

Amino Acids

45.02

Weight (kDa)

6.03

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	131 - 173	7.9e-21	KNOX1 domain
KNOX2	PF03791	185 - 230	1.2e-24	KNOX2 domain
ELK	PF03789	279 - 300	4e-10	ELK domain
Homeobox_KN	PF05920	319 - 358	6.3e-19	Homeobox KN domain
Homeodomain	PF00046	326 - 359	1.3e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	858
Acc36I	ACCTGC	1 cut(s)	858
AccB1I	GGYRCC	1 cut(s)	309
AccB7I	CCANNNNNTGG	2 cut(s)	77, 463
AccI	GTMKAC	1 cut(s)	1019
AciI	CCGC	8 cut(s)	147, 150, 159, 162, 165, 171, 529, 1013
AclWI	GGATC	6 cut(s)	33, 128, 582, 728, 809, 1038
AcoI	YGGCCR	2 cut(s)	247, 977
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	4 cut(s)	122, 786, 846, 905
AfaI	GTAC	2 cut(s)	266, 425
AfiI	CCNNNNNNNGG	4 cut(s)	77, 463, 571, 1147
AflII	CTTAAG	1 cut(s)	874
AgsI	TTSAA	5 cut(s)	346, 389, 546, 558, 671
AjnI	CCWGG	2 cut(s)	196, 935
AjuI	GAANNNNNNNTTGG	4 cut(s)	306, 338, 992, 1024
Alw21I	GWGCWC	3 cut(s)	377, 472, 840
Alw26I	GTCTC	3 cut(s)	198, 545, 1187
AlwI	GGATC	6 cut(s)	33, 128, 582, 728, 809, 1038
AoxI	GGCC	4 cut(s)	247, 632, 977, 1117
ApeKI	GCWGC	3 cut(s)	98, 168, 1136
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	1187
AsuHPI	GGTGA	6 cut(s)	60, 185, 720, 839, 1120, 1178
AsuII	TTCGAA	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	1187
BaeGI	GKGCMC	1 cut(s)	312
BalI	TGGCCA	2 cut(s)	249, 979
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	3 cut(s)	377, 472, 840
BbsI	GAAGAC	4 cut(s)	12, 227, 525, 834
Bbv12I	GWGCWC	3 cut(s)	377, 472, 840
BbvI	GCAGC	3 cut(s)	85, 180, 1148
BccI	CCATC	5 cut(s)	109, 401, 1105, 1109, 1145
BciT130I	CCWGG	2 cut(s)	198, 937
BclI	TGATCA	2 cut(s)	106, 175
BcoDI	GTCTC	3 cut(s)	198, 545, 1187
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	874
BfuAI	ACCTGC	1 cut(s)	858
BisI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 1137
BlsI	GCNGC	7 cut(s)	100, 149, 161, 164, 167, 170, 1138
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	198, 937
Bme18I	GGWCC	1 cut(s)	1187
BmgT120I	GGNCC	1 cut(s)	1187
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	198, 937
BmsI	GCATC	1 cut(s)	922
BoxI	GACNNNNGTC	1 cut(s)	529
BpiI	GAAGAC	4 cut(s)	12, 227, 525, 834
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	76, 648, 1089
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 463, 571, 1147
Bse1I	ACTGG	3 cut(s)	317, 576, 1082
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	198, 937
BseDI	CCNNGG	3 cut(s)	76, 648, 1089
BseGI	GGATG	2 cut(s)	1120, 1156
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	4 cut(s)	77, 463, 571, 1147
BseMII	CTCAG	7 cut(s)	362, 434, 510, 689, 726, 798, 845
BseNI	ACTGG	3 cut(s)	317, 576, 1082
BseRI	GAGGAG	3 cut(s)	676, 699, 785
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	85, 180, 1148
BshFI	GGCC	4 cut(s)	249, 634, 979, 1119
BshNI	GGYRCC	1 cut(s)	309
BsiHKAI	GWGCWC	3 cut(s)	377, 472, 840
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	77, 463, 571, 1147
BsmAI	GTCTC	3 cut(s)	198, 545, 1187
BsmBI	CGTCTC	1 cut(s)	1187
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	4 cut(s)	249, 634, 979, 1119
Bsp119I	TTCGAA	1 cut(s)	899
Bsp1286I	GDGCHC	4 cut(s)	312, 377, 472, 840
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	8 cut(s)	147, 150, 159, 162, 165, 171, 529, 1013
BspANI	GGCC	4 cut(s)	249, 634, 979, 1119
BspCNI	CTCAG	7 cut(s)	363, 433, 509, 688, 727, 799, 846
BspHI	TCATGA	2 cut(s)	28, 657
BspLI	GGNNCC	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	858
BspPI	GGATC	6 cut(s)	33, 128, 582, 728, 809, 1038
BspT104I	TTCGAA	1 cut(s)	899
BspT107I	GGYRCC	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	874
BsrI	ACTGG	3 cut(s)	317, 576, 1082
BssECI	CCNNGG	3 cut(s)	76, 648, 1089
BssT1I	CCWWGG	2 cut(s)	76, 648
Bst2UI	CCWGG	2 cut(s)	198, 937
Bst4CI	ACNGT	2 cut(s)	1172, 1181
Bst6I	CTCTTC	2 cut(s)	762, 1064
BstAFI	CTTAAG	1 cut(s)	874
BstBI	TTCGAA	1 cut(s)	899
BstDEI	CTNAG	8 cut(s)	371, 420, 496, 675, 735, 807, 854, 950
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	1120, 1156
BstMAI	GTCTC	3 cut(s)	198, 545, 1187
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 398, 685, 1081
BstNI	CCWGG	2 cut(s)	198, 937
BstNSI	RCATGY	2 cut(s)	688, 1099
BstPAI	GACNNNNGTC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	196, 935
BstSFI	CTRYAG	1 cut(s)	332
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	85, 180, 1148
BstV2I	GAAGAC	4 cut(s)	12, 227, 525, 834
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	4 cut(s)	249, 634, 979, 1119
BtgI	CCRYGG	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	1120, 1156
BtsIMutI	CAGTG	2 cut(s)	185, 1075
BveI	ACCTGC	1 cut(s)	858
CciI	TCATGA	2 cut(s)	28, 657
Cfr13I	GGNCC	1 cut(s)	1187
Csp6I	GTAC	2 cut(s)	265, 424
CviAII	CATG	9 cut(s)	29, 245, 448, 583, 649, 658, 685, 1096, 1191
CviQI	GTAC	2 cut(s)	265, 424
DdeI	CTNAG	8 cut(s)	371, 420, 496, 675, 735, 807, 854, 950
EaeI	YGGCCR	2 cut(s)	247, 977
Eam1104I	CTCTTC	2 cut(s)	762, 1064
EarI	CTCTTC	2 cut(s)	762, 1064
EciI	GGCGGA	1 cut(s)	1028
Ecl136II	GAGCTC	3 cut(s)	375, 470, 838
Eco130I	CCWWGG	2 cut(s)	76, 648
Eco24I	GRGCYC	3 cut(s)	377, 472, 840
Eco47I	GGWCC	1 cut(s)	1187
Eco53kI	GAGCTC	3 cut(s)	375, 470, 838
Eco57I	CTGAAG	4 cut(s)	122, 786, 846, 905
EcoICRI	GAGCTC	3 cut(s)	375, 470, 838
EcoRII	CCWGG	2 cut(s)	196, 935
EcoT14I	CCWWGG	2 cut(s)	76, 648
EcoT38I	GRGCYC	3 cut(s)	377, 472, 840
ErhI	CCWWGG	2 cut(s)	76, 648
Esp3I	CGTCTC	1 cut(s)	1187
FaeI	CATG	9 cut(s)	32, 248, 451, 586, 652, 661, 688, 1099, 1194
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	9 cut(s)	28, 244, 447, 582, 648, 657, 684, 1095, 1190
FbaI	TGATCA	2 cut(s)	106, 175
FblI	GTMKAC	1 cut(s)	1019
Fnu4HI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 1137
FokI	GGATG	2 cut(s)	1127, 1163
FriOI	GRGCYC	3 cut(s)	377, 472, 840
Fsp4HI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 1137
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 1137
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	249, 634, 979, 1119
Hin1II	CATG	9 cut(s)	32, 248, 451, 586, 652, 661, 688, 1099, 1194
HindIII	AAGCTT	2 cut(s)	441, 588
HinfI	GANTC	4 cut(s)	346, 844, 992, 1016
HphI	GGTGA	6 cut(s)	60, 185, 720, 839, 1120, 1178
Hpy166II	GTNNAC	1 cut(s)	1020
Hpy188I	TCNGA	9 cut(s)	114, 478, 720, 736, 766, 991, 997, 1035, 1090
Hpy188III	TCNNGA	6 cut(s)	29, 303, 546, 617, 658, 841
Hpy8I	GTNNAC	1 cut(s)	1020
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	994, 996, 1095
HpyCH4III	ACNGT	2 cut(s)	1172, 1181
HpyCH4V	TGCA	3 cut(s)	101, 1099, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 398, 685, 1081
HpyF3I	CTNAG	8 cut(s)	371, 420, 496, 675, 735, 807, 854, 950
Hsp92II	CATG	9 cut(s)	32, 248, 451, 586, 652, 661, 688, 1099, 1194
Ksp22I	TGATCA	2 cut(s)	106, 175
LmnI	GCTCC	7 cut(s)	380, 467, 475, 712, 772, 951, 961
Lsp1109I	GCAGC	3 cut(s)	85, 180, 1148
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	869, 1166, 1172
MfeI	CAATTG	1 cut(s)	1048
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	4 cut(s)	312, 377, 472, 840
MlsI	TGGCCA	2 cut(s)	249, 979
MluCI	AATT	8 cut(s)	85, 184, 210, 257, 340, 753, 920, 1048
MluNI	TGGCCA	2 cut(s)	249, 979
MlyI	GAGTC	1 cut(s)	1025
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	2 cut(s)	249, 979
MroXI	GAANNNNTTC	1 cut(s)	757
MscI	TGGCCA	2 cut(s)	249, 979
MseI	TTAA	4 cut(s)	213, 609, 681, 875
Msp20I	TGGCCA	2 cut(s)	249, 979
MspA1I	CMGCKG	2 cut(s)	171, 529
MspCI	CTTAAG	1 cut(s)	874
MspR9I	CCNGG	2 cut(s)	198, 937
MunI	CAATTG	1 cut(s)	1048
Mva1269I	GAATGC	1 cut(s)	1138
MvaI	CCWGG	2 cut(s)	198, 937
MwoI	GCNNNNNNNGC	6 cut(s)	156, 165, 168, 398, 685, 1081
NcoI	CCATGG	1 cut(s)	648
NlaIII	CATG	9 cut(s)	32, 248, 451, 586, 652, 661, 688, 1099, 1194
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	1166, 1172
NspI	RCATGY	2 cut(s)	688, 1099
NspV	TTCGAA	1 cut(s)	899
PagI	TCATGA	2 cut(s)	28, 657
PaqCI	CACCTGC	1 cut(s)	858
PctI	GAATGC	1 cut(s)	1138
PdmI	GAANNNNTTC	1 cut(s)	757
PfeI	GAWTC	3 cut(s)	346, 844, 992
PflMI	CCANNNNNTGG	2 cut(s)	77, 463
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	7 cut(s)	100, 149, 161, 164, 167, 170, 1138
PleI	GAGTC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	1024
PshAI	GACNNNNGTC	1 cut(s)	529
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	3 cut(s)	377, 472, 840
Psp6I	CCWGG	2 cut(s)	196, 935
PspGI	CCWGG	2 cut(s)	196, 935
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	1187
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	2 cut(s)	266, 425
RsaNI	GTAC	2 cut(s)	265, 424
SacI	GAGCTC	3 cut(s)	377, 472, 840
SaqAI	TTAA	4 cut(s)	213, 609, 681, 875
SatI	GCNGC	7 cut(s)	99, 148, 160, 163, 166, 169, 1137
Sau96I	GGNCC	1 cut(s)	1187
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	1025
ScrFI	CCNGG	2 cut(s)	198, 937
SduI	GDGCHC	4 cut(s)	312, 377, 472, 840
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	899
SinI	GGWCC	1 cut(s)	1187
SmlI	CTYRAG	2 cut(s)	839, 874
SmoI	CTYRAG	2 cut(s)	839, 874
Sse9I	AATT	8 cut(s)	85, 184, 210, 257, 340, 753, 920, 1048
SsiI	CCGC	8 cut(s)	147, 150, 159, 162, 165, 171, 529, 1013
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	3 cut(s)	377, 472, 840
StyD4I	CCNGG	2 cut(s)	196, 935
StyI	CCWWGG	2 cut(s)	76, 648
TaaI	ACNGT	2 cut(s)	1172, 1181
TaqI	TCGA	1 cut(s)	899
TaqII	GACCGA	2 cut(s)	239, 1175
TasI	AATT	8 cut(s)	85, 184, 210, 257, 340, 753, 920, 1048
TatI	WGTACW	2 cut(s)	264, 423
TauI	GCSGC	4 cut(s)	150, 162, 165, 168
TfiI	GAWTC	3 cut(s)	346, 844, 992
Tru1I	TTAA	4 cut(s)	213, 609, 681, 875
Tru9I	TTAA	4 cut(s)	213, 609, 681, 875
TscAI	CASTG	2 cut(s)	185, 1082
TseFI	GTSAC	2 cut(s)	1166, 1172
TseI	GCWGC	3 cut(s)	98, 168, 1136
Tsp45I	GTSAC	2 cut(s)	1166, 1172
TspDTI	ATGAA	7 cut(s)	122, 288, 314, 571, 646, 750, 1045
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	185, 1082
Van91I	CCANNNNNTGG	2 cut(s)	77, 463
Vha464I	CTTAAG	1 cut(s)	874
VpaK11BI	GGWCC	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	688, 1099
XmiI	GTMKAC	1 cut(s)	1019
XmnI	GAANNNNTTC	1 cut(s)	757
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.