pycom08g06220

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
4808090 .. 4812617
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06220.1

Sequence Viewer

Length: 1248 bp
ATGTCTCTTGGTAAAGTTGGTGCGGTTTATCCTCATATAACTGGTAGTTTCGTTGGTGGTTTTATACGCAGAAGAGAAATAAAATGGAAGACTACAACAATCAAATGGATCGATGATAGTTCAGGTGGTAGGGGAAACTTCCTCTACGCCTCACCAAACCTTGGAGGAAATTATGGGAGAGCTGCAAGTGATCATCAGATGGGAATCAACACCTTTCATCTTCAATCAAGCGGCGGTGGAGGCGGCGGCGGCAGTGGCGATCAGTGTAATTTTCAGTCTCCAGGAGCACACCCAATTAATGTGAAGACCGAAGCCACCACATCACAACATGGCCACCCAAAATTTCATTACAACAATAACAATAATAATCATCATCATCATCTTGTTTCTTCATCAAGAGGGCACCAACCAGTTGTTCATCACCTGAGCTCCAACGAAGTTGAAGCCATCAAAGCGATCATCGCCCACCCTCAGTACTCTAACCTCGTGGAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCATCTGATGTTGTGCCTCGACTCTCAGTTGCCAGACAGGAGTTTGAGGCACGACAGCGATCTTCAGGAACTTCAAGAGAAACTTCAAAAGACCCAGAACTCGATCAGTTCATGGAAGCATACTACGATATGCTGGTGAAATATCGTGAAGAACTAACAAGGCCAATACAAGAAGCCATGGATTTCATGAGAAGGATTGAAACTCAGCTTAACATGCTTGGAAATAATAATAATGCTCCTCCTCTTCGATCGATCTTCTCACCCTCTGAGGACAAGTGTGAAGGAATTGGTTCATCTGAAGACGAGCAGGAGAATAGTGGTGGAGAAACTGAAGTGCCTGAGATTGATCCACGAGCTGAAGACAGAGAGCTCAAGAATCACCTGCTGAGAAAGTATAGTGGTTACTTAAGTAGCCTGAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAATTGCCCAAAGAAGCCAGGCAGAAGCTCCTGAGTTGGTGGGAGCTACATTACAAGTGGCCATATCCTTCGGAATCGGAGAAGGTGGCATTGGCGGAGTCTACCGGTTTGGATCAGAAACAAATAAACAATTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCTTCAGAGGACATGCAGTTCATGGTGATGGATGGCCTACACCCACAGAATGCAGCCCTCTATATGGATGGACACTACACAGGTGACGTTCACTACCGTCTCGGGCCATGA

Protein Analysis

416

Amino Acids

46.9

Weight (kDa)

7.37

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 151 - 190 7.5e-18 KNOX1 domain
KNOX2 PF03791 202 - 247 1.3e-24 KNOX2 domain
ELK PF03789 297 - 318 4.2e-10 ELK domain
Homeobox_KN PF05920 337 - 376 6.7e-19 Homeobox KN domain
Homeodomain PF00046 344 - 377 1.5e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 2 cut(s) 161, 514
AccI GTMKAC 1 cut(s) 1073
AciI CCGC 7 cut(s) 23, 231, 234, 243, 246, 249, 1067
AclWI GGATC 3 cut(s) 116, 863, 1092
AcoI YGGCCR 2 cut(s) 331, 1031
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 6 cut(s) 570, 840, 873, 900, 959, 1125
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 3 cut(s) 161, 514, 1201
AflII CTTAAG 1 cut(s) 928
AgeI ACCGGT 1 cut(s) 1076
AgsI TTSAA 5 cut(s) 224, 443, 597, 609, 722
AjnI CCWGG 2 cut(s) 280, 989
AjuI GAANNNNNNNTTGG 4 cut(s) 399, 431, 1046, 1078
AloI GAACNNNNNNTCC 2 cut(s) 1139, 1171
Alw21I GWGCWC 4 cut(s) 289, 431, 523, 894
Alw26I GTCTC 3 cut(s) 9, 282, 1241
AlwI GGATC 3 cut(s) 116, 863, 1092
Ama87I CYCGRG 1 cut(s) 1238
AoxI GGCC 5 cut(s) 331, 683, 1031, 1171, 1241
ApeKI GCWGC 2 cut(s) 182, 1190
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 297
AsiGI ACCGGT 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 811
AspS9I GGNCC 1 cut(s) 1241
AsuHPI GGTGA 7 cut(s) 144, 413, 670, 774, 893, 1174, 1232
AvaI CYCGRG 1 cut(s) 1238
BaeGI GKGCMC 1 cut(s) 405
BalI TGGCCA 2 cut(s) 333, 1033
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 3 cut(s) 431, 523, 894
BauI CACGAG 2 cut(s) 485, 873
BbsI GAAGAC 4 cut(s) 95, 311, 828, 888
Bbv12I GWGCWC 4 cut(s) 289, 431, 523, 894
BbvI GCAGC 2 cut(s) 169, 1202
BccI CCATC 6 cut(s) 193, 455, 532, 1159, 1163, 1199
BciT130I CCWGG 2 cut(s) 282, 991
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 3 cut(s) 9, 282, 1241
BfrI CTTAAG 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 6 cut(s) 183, 232, 244, 247, 250, 1191
BlsI GCNGC 6 cut(s) 184, 233, 245, 248, 251, 1192
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 282, 991
BmeT110I CYCGRG 1 cut(s) 1238
BmgT120I GGNCC 1 cut(s) 1241
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 282, 991
BpiI GAAGAC 4 cut(s) 95, 311, 828, 888
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 878
Bsa29I ATCGAT 2 cut(s) 111, 773
BsaBI GATNNNNATC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 160, 699
BsaWI WCCGGW 1 cut(s) 1076
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 514, 1201
Bse118I RCCGGY 1 cut(s) 1076
Bse1I ACTGG 3 cut(s) 46, 410, 1136
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 282, 991
BseCI ATCGAT 2 cut(s) 111, 773
BseDI CCNNGG 2 cut(s) 160, 699
BseGI GGATG 2 cut(s) 1174, 1210
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 3 cut(s) 161, 514, 1201
BseMII CTCAG 8 cut(s) 416, 485, 561, 740, 780, 852, 899, 995
BseNI ACTGG 3 cut(s) 46, 410, 1136
BseRI GAGGAG 2 cut(s) 750, 753
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 2 cut(s) 169, 1202
Bsh1285I CGRYCG 1 cut(s) 773
BshFI GGCC 5 cut(s) 333, 685, 1033, 1173, 1243
BshNI GGYRCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 1076
BshVI ATCGAT 2 cut(s) 111, 773
BsiEI CGRYCG 1 cut(s) 773
BsiHKAI GWGCWC 4 cut(s) 289, 431, 523, 894
BsiHKCI CYCGRG 1 cut(s) 1238
BsiSI CCGG 1 cut(s) 1077
BslI CCNNNNNNNGG 3 cut(s) 161, 514, 1201
BsmAI GTCTC 3 cut(s) 9, 282, 1241
BsmBI CGTCTC 1 cut(s) 1241
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 5 cut(s) 333, 685, 1033, 1173, 1243
BsoBI CYCGRG 1 cut(s) 1238
Bsp1286I GDGCHC 5 cut(s) 289, 405, 431, 523, 894
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 7 cut(s) 23, 231, 234, 243, 246, 249, 1067
BspANI GGCC 5 cut(s) 333, 685, 1033, 1173, 1243
BspCNI CTCAG 8 cut(s) 417, 484, 560, 739, 781, 853, 900, 996
BspDI ATCGAT 2 cut(s) 111, 773
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 404
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 3 cut(s) 116, 863, 1092
BspT107I GGYRCC 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 928
BsrFI RCCGGY 1 cut(s) 1076
BsrI ACTGG 3 cut(s) 46, 410, 1136
BssAI RCCGGY 1 cut(s) 1076
BssECI CCNNGG 2 cut(s) 160, 699
BssSI CACGAG 2 cut(s) 485, 873
BssT1I CCWWGG 2 cut(s) 160, 699
Bst2BI CACGAG 2 cut(s) 485, 873
Bst2UI CCWGG 2 cut(s) 282, 991
Bst4CI ACNGT 1 cut(s) 1235
Bst6I CTCTTC 3 cut(s) 67, 771, 1118
BstAFI CTTAAG 1 cut(s) 928
BstDEI CTNAG 8 cut(s) 425, 471, 547, 726, 789, 861, 908, 1004
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 2 cut(s) 1174, 1210
BstMAI GTCTC 3 cut(s) 9, 282, 1241
BstMCI CGRYCG 1 cut(s) 773
BstMWI GCNNNNNNNGC 7 cut(s) 240, 249, 255, 452, 461, 736, 1135
BstNI CCWGG 2 cut(s) 282, 991
BstNSI RCATGY 2 cut(s) 739, 1153
BstSCI CCNGG 2 cut(s) 280, 989
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 169, 1202
BstV2I GAAGAC 4 cut(s) 95, 311, 828, 888
Bsu15I ATCGAT 2 cut(s) 111, 773
BsuRI GGCC 5 cut(s) 333, 685, 1033, 1173, 1243
BsuTUI ATCGAT 2 cut(s) 111, 773
BtgI CCRYGG 1 cut(s) 699
BtgZI GCGATG 1 cut(s) 445
BtsCI GGATG 2 cut(s) 1174, 1210
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 259, 269, 1129
BveI ACCTGC 1 cut(s) 912
CciI TCATGA 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 1076
Cfr13I GGNCC 1 cut(s) 1241
ClaI ATCGAT 2 cut(s) 111, 773
Csp6I GTAC 1 cut(s) 475
CspAI ACCGGT 1 cut(s) 1076
CviAII CATG 9 cut(s) 329, 499, 634, 700, 709, 736, 1150, 1159, 1245
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 8 cut(s) 425, 471, 547, 726, 789, 861, 908, 1004
EaeI YGGCCR 2 cut(s) 331, 1031
Eam1104I CTCTTC 3 cut(s) 67, 771, 1118
EarI CTCTTC 3 cut(s) 67, 771, 1118
EciI GGCGGA 1 cut(s) 1082
Ecl136II GAGCTC 3 cut(s) 429, 521, 892
Eco130I CCWWGG 2 cut(s) 160, 699
Eco24I GRGCYC 3 cut(s) 431, 523, 894
Eco53kI GAGCTC 3 cut(s) 429, 521, 892
Eco57I CTGAAG 6 cut(s) 570, 840, 873, 900, 959, 1125
Eco88I CYCGRG 1 cut(s) 1238
EcoICRI GAGCTC 3 cut(s) 429, 521, 892
EcoRII CCWGG 2 cut(s) 280, 989
EcoT14I CCWWGG 2 cut(s) 160, 699
EcoT38I GRGCYC 3 cut(s) 431, 523, 894
ErhI CCWWGG 2 cut(s) 160, 699
Esp3I CGTCTC 1 cut(s) 1241
FaeI CATG 9 cut(s) 332, 502, 637, 703, 712, 739, 1153, 1162, 1248
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 9 cut(s) 328, 498, 633, 699, 708, 735, 1149, 1158, 1244
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 6 cut(s) 183, 232, 244, 247, 250, 1191
FokI GGATG 2 cut(s) 1181, 1217
FriOI GRGCYC 3 cut(s) 431, 523, 894
Fsp4HI GCNGC 6 cut(s) 183, 232, 244, 247, 250, 1191
GluI GCNGC 6 cut(s) 183, 232, 244, 247, 250, 1191
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 5 cut(s) 333, 685, 1033, 1173, 1243
HapII CCGG 1 cut(s) 1077
Hin1II CATG 9 cut(s) 332, 502, 637, 703, 712, 739, 1153, 1162, 1248
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 5 cut(s) 204, 543, 898, 1046, 1070
HpaII CCGG 1 cut(s) 1077
HphI GGTGA 7 cut(s) 144, 413, 670, 774, 893, 1174, 1232
Hpy166II GTNNAC 2 cut(s) 1074, 1228
Hpy188I TCNGA 8 cut(s) 198, 529, 790, 820, 1045, 1051, 1089, 1144
Hpy188III TCNNGA 7 cut(s) 396, 588, 597, 668, 709, 895, 1003
Hpy8I GTNNAC 2 cut(s) 1074, 1228
HpyAV CCTTC 5 cut(s) 708, 797, 1048, 1050, 1149
HpyCH4III ACNGT 1 cut(s) 1235
HpyCH4IV ACGT 1 cut(s) 1224
HpyCH4V TGCA 3 cut(s) 185, 1153, 1190
HpyF10VI GCNNNNNNNGC 7 cut(s) 240, 249, 255, 452, 461, 736, 1135
HpyF3I CTNAG 8 cut(s) 425, 471, 547, 726, 789, 861, 908, 1004
HpySE526I ACGT 1 cut(s) 1224
Hsp92II CATG 9 cut(s) 332, 502, 637, 703, 712, 739, 1153, 1162, 1248
Ksp22I TGATCA 1 cut(s) 190
LmnI GCTCC 7 cut(s) 284, 434, 518, 526, 763, 1005, 1015
Lsp1109I GCAGC 2 cut(s) 169, 1202
MaeII ACGT 1 cut(s) 1224
MaeIII GTNAC 2 cut(s) 923, 1220
MfeI CAATTG 1 cut(s) 1102
MhlI GDGCHC 5 cut(s) 289, 405, 431, 523, 894
MlsI TGGCCA 2 cut(s) 333, 1033
MluCI AATT 7 cut(s) 169, 268, 294, 341, 807, 974, 1102
MluNI TGGCCA 2 cut(s) 333, 1033
MlyI GAGTC 2 cut(s) 537, 1079
MmeI TCCRAC 1 cut(s) 456
Mox20I TGGCCA 2 cut(s) 333, 1033
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 2 cut(s) 333, 1033
MseI TTAA 3 cut(s) 297, 732, 929
MslI CAYNNNNRTG 1 cut(s) 1163
Msp20I TGGCCA 2 cut(s) 333, 1033
MspCI CTTAAG 1 cut(s) 928
MspI CCGG 1 cut(s) 1077
MspR9I CCNGG 2 cut(s) 282, 991
MunI CAATTG 1 cut(s) 1102
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 2 cut(s) 282, 991
MwoI GCNNNNNNNGC 7 cut(s) 240, 249, 255, 452, 461, 736, 1135
NcoI CCATGG 1 cut(s) 699
NlaIII CATG 9 cut(s) 332, 502, 637, 703, 712, 739, 1153, 1162, 1248
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 1220
NspI RCATGY 2 cut(s) 739, 1153
PagI TCATGA 1 cut(s) 708
PaqCI CACCTGC 1 cut(s) 912
PctI GAATGC 1 cut(s) 1192
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 204, 898, 1046
PflMI CCANNNNNTGG 2 cut(s) 161, 514
PfoI TCCNGGA 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 1076
PkrI GCNGC 6 cut(s) 184, 233, 245, 248, 251, 1192
Ple19I CGATCG 1 cut(s) 773
PleI GAGTC 2 cut(s) 537, 1078
PpsI GAGTC 2 cut(s) 537, 1078
PshBI ATTAAT 1 cut(s) 297
Psp124BI GAGCTC 3 cut(s) 431, 523, 894
Psp6I CCWGG 2 cut(s) 280, 989
PspGI CCWGG 2 cut(s) 280, 989
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 1241
PvuI CGATCG 1 cut(s) 773
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 1163
SacI GAGCTC 3 cut(s) 431, 523, 894
SaqAI TTAA 3 cut(s) 297, 732, 929
SatI GCNGC 6 cut(s) 183, 232, 244, 247, 250, 1191
Sau96I GGNCC 1 cut(s) 1241
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 2 cut(s) 537, 1079
ScrFI CCNGG 2 cut(s) 282, 991
SduI GDGCHC 5 cut(s) 289, 405, 431, 523, 894
SmiMI CAYNNNNRTG 1 cut(s) 1163
SmlI CTYRAG 2 cut(s) 893, 928
SmoI CTYRAG 2 cut(s) 893, 928
Sse9I AATT 7 cut(s) 169, 268, 294, 341, 807, 974, 1102
SsiI CCGC 7 cut(s) 23, 231, 234, 243, 246, 249, 1067
SstI GAGCTC 3 cut(s) 431, 523, 894
StyD4I CCNGG 2 cut(s) 280, 989
StyI CCWWGG 2 cut(s) 160, 699
TaaI ACNGT 1 cut(s) 1235
TaiI ACGT 1 cut(s) 1227
TaqI TCGA 5 cut(s) 111, 541, 624, 769, 773
TaqII GACCGA 1 cut(s) 323
TasI AATT 7 cut(s) 169, 268, 294, 341, 807, 974, 1102
TatI WGTACW 1 cut(s) 474
TauI GCSGC 4 cut(s) 234, 246, 249, 252
TfiI GAWTC 3 cut(s) 204, 898, 1046
Tru1I TTAA 3 cut(s) 297, 732, 929
Tru9I TTAA 3 cut(s) 297, 732, 929
TscAI CASTG 3 cut(s) 259, 269, 1136
TseFI GTSAC 1 cut(s) 1220
TseI GCWGC 2 cut(s) 182, 1190
Tsp45I GTSAC 1 cut(s) 1220
TspDTI ATGAA 9 cut(s) 206, 335, 381, 407, 622, 697, 804, 1099, 1147
TspRI CASTG 3 cut(s) 259, 269, 1136
Van91I CCANNNNNTGG 2 cut(s) 161, 514
Vha464I CTTAAG 1 cut(s) 928
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 341
XceI RCATGY 2 cut(s) 739, 1153
XmiI GTMKAC 1 cut(s) 1073
XmnI GAANNNNTTC 1 cut(s) 811
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.