Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009243

Physical Location & Seq

Genomic Coordinates Forward (+)

4315813 .. 4319449

Gene Structure 3637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1062700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAGACTACAACAATCAAATGGATCATGAGAGTTCGGGTGGTAGGGGAAACTTCCTCTACGCCTCACCAAACCTTGGAGGAAATTATGGGAGAGCTGCAAGTGATCATCAGATGGGGATCAACACCTTTCATCTTCAGTCAAGCGGCGGTGGAGGCGGCGGCGGCAGTGGTGATCAGTGTAATTTTCAGTCTCCAGGAACACACCCAATTAATGTGAAGACCGAAGCCACCACATCACAACATGGCCACCAAAAATTTCAGTACAACAACAACAATAATAGTCATCTTGTTTCTTCATCAAGAGGGCACCAACCAGTTGTTCATCAGCTACAGAATAATTTTGATCTTCTAAACGACGATCACAGCCTGAGCTCCAACGAAGTTGAAGCCATCAAAGCCAAGATCATCGCCCACCCTCAGTACTCTAACCTCTTGGAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCGTCTGATGTTGTGGCTCGGCTCTCAGTTGCTAGGCAAGAGTTTGAGGCACGACAGCGGTCTTCAGGGACTTCAAGAGAGACTTCAAAAGACCCAGAACTGGATCAGTTCATGGAAGCTTACTACGATATGCTGGTGAAATATCGTGAAGAACTAACAAGGCCAATACAAGAAGCCATGGATTTCATGAGGAGGATTGAAACTCAGCTTAACATGCTTGGAAATAATAATAATGCTCCTCCTCTTCGAATCTTCTCACCCTCTGGTAAAGGACAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

251

Amino Acids

27.74

Weight (kDa)

5.85

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	131 - 173	1.1e-21	KNOX1 domain
KNOX2	PF03791	185 - 230	6.2e-25	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08150
fragaria_vesca	FvH4_2g32400 FvH4_2g32400
malus_domestica	MD08G1075200.v1.1 MD15G1062700.v1.1
prunus_persica	Prupe.1G416700_v2.0.a1 Prupe.1G416700_v2.0.a1
pyrus_communis	pycom08g06220 pycom15g05940
rosa_chinensis	RchiOBHm_Chr6g0310301
rosa_laevigata	RLG00000010493
rosa_multiflora	Rmu_sc0002348.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158680
rosa_rugosa	Rorug06G0378500 Rorug06G0378500 Rorug06G0378600 Rorug06G0378700
rosa_samantha	Rh6AG493000 Rh6BG502600 Rh6CG507600 Rh6DG493700
rosa_wichuraiana	Rw6G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AccB7I	CCANNNNNTGG	2 cut(s)	77, 463
AciI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 529
AclWI	GGATC	3 cut(s)	33, 128, 582
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	2 cut(s)	122, 519
AfaI	GTAC	2 cut(s)	266, 425
AfiI	CCNNNNNNNGG	3 cut(s)	77, 463, 571
AgsI	TTSAA	4 cut(s)	389, 546, 558, 671
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	7 cut(s)	98, 331, 375, 443, 470, 590, 679
AluI	AGCT	7 cut(s)	98, 331, 375, 443, 470, 590, 679
Alw21I	GWGCWC	2 cut(s)	377, 472
Alw26I	GTCTC	2 cut(s)	198, 545
AlwI	GGATC	3 cut(s)	33, 128, 582
AoxI	GGCC	2 cut(s)	247, 632
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	213
AsuHPI	GGTGA	4 cut(s)	60, 185, 619, 720
AsuII	TTCGAA	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	2 cut(s)	377, 472
BbsI	GAAGAC	3 cut(s)	12, 227, 525
Bbv12I	GWGCWC	2 cut(s)	377, 472
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	109, 401
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	2 cut(s)	106, 175
BcoDI	GTCTC	2 cut(s)	198, 545
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	5 cut(s)	99, 148, 160, 163, 166
BlsI	GCNGC	5 cut(s)	100, 149, 161, 164, 167
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	198
BoxI	GACNNNNGTC	1 cut(s)	529
BpiI	GAAGAC	3 cut(s)	12, 227, 525
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	76, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 463, 571
Bse1I	ACTGG	2 cut(s)	317, 576
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	76, 648
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	77, 463, 571
BseMII	CTCAG	4 cut(s)	362, 434, 510, 689
BseNI	ACTGG	2 cut(s)	317, 576
BseRI	GAGGAG	3 cut(s)	676, 699, 702
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	249, 634
BshNI	GGYRCC	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	377, 472
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	3 cut(s)	77, 463, 571
BsmAI	GTCTC	2 cut(s)	198, 545
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	249, 634
Bsp119I	TTCGAA	1 cut(s)	718
Bsp1286I	GDGCHC	3 cut(s)	312, 377, 472
Bsp143I	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 529
BspANI	GGCC	2 cut(s)	249, 634
BspCNI	CTCAG	4 cut(s)	363, 433, 509, 688
BspHI	TCATGA	2 cut(s)	28, 657
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	33, 128, 582
BspT104I	TTCGAA	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	317, 576
BssECI	CCNNGG	2 cut(s)	76, 648
BssMI	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
BssT1I	CCWWGG	2 cut(s)	76, 648
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	718
BstDEI	CTNAG	4 cut(s)	371, 420, 496, 675
BstDSI	CCRYGG	1 cut(s)	648
BstKTI	GATC	8 cut(s)	28, 109, 123, 178, 349, 364, 408, 577
BstMAI	GTCTC	2 cut(s)	198, 545
BstMBI	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 165, 398, 685
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	332
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	3 cut(s)	12, 227, 525
BsuRI	GGCC	2 cut(s)	249, 634
BtgI	CCRYGG	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	175, 185
CciI	TCATGA	2 cut(s)	28, 657
Csp6I	GTAC	2 cut(s)	265, 424
CviAII	CATG	7 cut(s)	29, 245, 448, 583, 649, 658, 685
CviQI	GTAC	2 cut(s)	265, 424
DdeI	CTNAG	4 cut(s)	371, 420, 496, 675
DpnI	GATC	8 cut(s)	27, 108, 122, 177, 348, 363, 407, 576
DpnII	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Ecl136II	GAGCTC	2 cut(s)	375, 470
Eco130I	CCWWGG	2 cut(s)	76, 648
Eco24I	GRGCYC	2 cut(s)	377, 472
Eco53kI	GAGCTC	2 cut(s)	375, 470
Eco57I	CTGAAG	2 cut(s)	122, 519
EcoICRI	GAGCTC	2 cut(s)	375, 470
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	76, 648
EcoT38I	GRGCYC	2 cut(s)	377, 472
ErhI	CCWWGG	2 cut(s)	76, 648
FaeI	CATG	7 cut(s)	32, 248, 451, 586, 652, 661, 688
FaiI	YATR	9 cut(s)	30, 90, 246, 449, 584, 602, 650, 659, 686
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	7 cut(s)	28, 244, 447, 582, 648, 657, 684
FbaI	TGATCA	2 cut(s)	106, 175
Fnu4HI	GCNGC	5 cut(s)	99, 148, 160, 163, 166
FriOI	GRGCYC	2 cut(s)	377, 472
Fsp4HI	GCNGC	5 cut(s)	99, 148, 160, 163, 166
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	5 cut(s)	99, 148, 160, 163, 166
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	249, 634
Hin1II	CATG	7 cut(s)	32, 248, 451, 586, 652, 661, 688
HindIII	AAGCTT	2 cut(s)	441, 588
HinfI	GANTC	1 cut(s)	720
HphI	GGTGA	4 cut(s)	60, 185, 619, 720
Hpy188I	TCNGA	2 cut(s)	114, 478
Hpy188III	TCNNGA	5 cut(s)	29, 303, 546, 617, 658
Hpy99I	CGWCG	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 165, 398, 685
HpyF3I	CTNAG	4 cut(s)	371, 420, 496, 675
Hsp92II	CATG	7 cut(s)	32, 248, 451, 586, 652, 661, 688
Ksp22I	TGATCA	2 cut(s)	106, 175
Kzo9I	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
LmnI	GCTCC	4 cut(s)	380, 467, 475, 712
LpnPI	CCDG	9 cut(s)	183, 210, 330, 383, 522, 557, 579, 590, 720
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	504
MalI	GATC	8 cut(s)	27, 108, 122, 177, 348, 363, 407, 576
MboI	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
MboII	GAAGA	9 cut(s)	17, 128, 232, 288, 341, 525, 632, 707, 715
MhlI	GDGCHC	3 cut(s)	312, 377, 472
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	85, 184, 210, 257, 340
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	213, 681
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	156, 165, 398, 685
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
NlaIII	CATG	7 cut(s)	32, 248, 451, 586, 652, 661, 688
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	469
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	718
PagI	TCATGA	2 cut(s)	28, 657
PfeI	GAWTC	1 cut(s)	720
PflMI	CCANNNNNTGG	2 cut(s)	77, 463
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	100, 149, 161, 164, 167
PshAI	GACNNNNGTC	1 cut(s)	529
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	377, 472
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	266, 425
RsaNI	GTAC	2 cut(s)	265, 424
SacI	GAGCTC	2 cut(s)	377, 472
SaqAI	TTAA	2 cut(s)	213, 681
SatI	GCNGC	5 cut(s)	99, 148, 160, 163, 166
Sau3AI	GATC	8 cut(s)	25, 106, 120, 175, 346, 361, 405, 574
ScaI	AGTACT	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	3 cut(s)	312, 377, 472
SfcI	CTRYAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	718
Sse9I	AATT	5 cut(s)	85, 184, 210, 257, 340
SsiI	CCGC	6 cut(s)	147, 150, 159, 162, 165, 529
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	2 cut(s)	377, 472
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	76, 648
TaqI	TCGA	1 cut(s)	718
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	85, 184, 210, 257, 340
TatI	WGTACW	2 cut(s)	264, 423
TauI	GCSGC	4 cut(s)	150, 162, 165, 168
TfiI	GAWTC	1 cut(s)	720
Tru1I	TTAA	2 cut(s)	213, 681
Tru9I	TTAA	2 cut(s)	213, 681
TscAI	CASTG	2 cut(s)	175, 185
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	5 cut(s)	122, 288, 314, 571, 646
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	175, 185
Van91I	CCANNNNNTGG	2 cut(s)	77, 463
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.