AT4G08230

Selenoprotein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
5187785 .. 5189794
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08230.2

Sequence Viewer

Length: 342 bp
ATGGCGTACGTCGAAGGAGGTGTGGTTAAAGCGAAGAGGCCAATATGGAGACTAAGGACGATCAAAGATTTCTTCTTGTCCATCATTAATCTAATACAAGTCTTCTTTGTAACCATGTTTTCGATGGAGAAATCAGATGCATACAGGAAAGGCTCTAAGCCTAATAAGAAGTGGGGTGGTGGCATGGGTGGCGGTGGTGGTGGAGGCGGAGGCAGTGGCGGTGGTGGTGGTGGTAGGGGTGGTGGACCTCCTCGTGGGGGCCTCGACAATGTTCGTGGTTTGAATGATATCCGTGGAGCTGACCACAATTCCCTACCTGCATGTGGCTCGTGCTGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

11.55

Weight (kDa)

10.03

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013435)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AciI CCGC 3 cut(s) 192, 207, 219
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 254, 257, 323
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 43
AoxI GGCC 2 cut(s) 38, 259
AseI ATTAAT 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 245, 259
AvaII GGWCC 1 cut(s) 245
BauI CACGAG 2 cut(s) 252, 328
BbsI GAAGAC 1 cut(s) 94
BccI CCATC 2 cut(s) 89, 118
BcgI CGANNNNNNTGC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 245, 259
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 257, 323
BseDI CCNNGG 1 cut(s) 292
BseLI CCNNNNNNNGG 3 cut(s) 254, 257, 323
BseRI GAGGAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 40, 261
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 254, 257, 323
BsmAI GTCTC 1 cut(s) 43
BsnI GGCC 2 cut(s) 40, 261
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 3 cut(s) 192, 207, 219
BspANI GGCC 2 cut(s) 40, 261
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 1 cut(s) 60
BssSI CACGAG 2 cut(s) 252, 328
Bst2BI CACGAG 2 cut(s) 252, 328
Bst6I CTCTTC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 53, 156
BstDSI CCRYGG 1 cut(s) 292
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 40, 261
BtgI CCRYGG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 245, 259
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 3 cut(s) 115, 184, 321
CviJI RGCY 7 cut(s) 40, 153, 160, 261, 299, 327, 339
CviKI_1 RGCY 7 cut(s) 40, 153, 160, 261, 299, 327, 339
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 53, 156
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 222
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 259
EcoRV GATATC 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 3 cut(s) 118, 187, 324
FaiI YATR 5 cut(s) 46, 116, 142, 185, 322
FatI CATG 3 cut(s) 114, 183, 320
HaeIII GGCC 2 cut(s) 40, 261
Hin1II CATG 3 cut(s) 118, 187, 324
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 245
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 140, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 2 cut(s) 53, 156
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 118, 187, 324
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 2 cut(s) 130, 330
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 46, 64, 94
MluCI AATT 1 cut(s) 307
MnlI CCTC 7 cut(s) 11, 30, 197, 203, 258, 261, 272
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 27, 87
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 118, 187, 324
NlaIV GGNNCC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 1 cut(s) 324
Pfl23II CGTACG 1 cut(s) 6
PshBI ATTAAT 1 cut(s) 87
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 2 cut(s) 245, 259
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 27, 87
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 245, 259
SetI ASST 5 cut(s) 12, 22, 250, 301, 319
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 245
Sse9I AATT 1 cut(s) 307
SsiI CCGC 3 cut(s) 192, 207, 219
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 12, 122, 264
TasI AATT 1 cut(s) 307
Tru1I TTAA 2 cut(s) 27, 87
Tru9I TTAA 2 cut(s) 27, 87
TscAI CASTG 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 87
XceI RCATGY 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.