RchiOBHm_Chr6g0295131

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013435
Physical Location & Seq
Reverse (-)
57263051 .. 57266109
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26485

Sequence Viewer

Length: 441 bp
ATGAAAATTGAGATGATGTGTACAATTGGTCGACGGCAAAATCTGGAAGTATATATACAACATATTCTGCTCGACTCTTTCTATAAAAGTTTTGGAACGAAGACTTCCGAGCTTAGACTCCGATCTCAATCTCCGATGGCGTACGTCGAGCGAGGCGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACGGATTTCTTCTGGGCCATCGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATCTGGTGCTAGCAAAAAATGGGATGGCGGGGGCCCCGGAGGGCCTGGAGGGGGACCGTATGGTGGTGGTCCACGTGGCCCACCTCGTGGACTTGACAATGTTCGTGGCATCGACCATAGTTCCTTACCTGCCTGCGGTTCCTGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

146

Amino Acids

15.97

Weight (kDa)

9.77

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 47 - 125 3e-22 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 31
AciI CCGC 2 cut(s) 315, 423
AclWI GGATC 2 cut(s) 168, 295
AcvI CACGTG 1 cut(s) 362
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 2 cut(s) 22, 143
AfiI CCNNNNNNNGG 4 cut(s) 338, 350, 374, 422
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 2 cut(s) 168, 295
AoxI GGCC 4 cut(s) 213, 319, 329, 364
ApaI GGGCCC 1 cut(s) 323
AspS9I GGNCC 7 cut(s) 213, 319, 320, 329, 341, 356, 365
AsuC2I CCSGG 1 cut(s) 324
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 2 cut(s) 341, 356
BaeGI GKGCMC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BauI CACGAG 1 cut(s) 372
BbrPI CACGTG 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 107
BccI CCATC 4 cut(s) 130, 224, 253, 305
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 324, 333
Bme18I GGWCC 2 cut(s) 341, 356
BmgT120I GGNCC 7 cut(s) 213, 319, 320, 329, 341, 356, 365
BmiI GGNNCC 5 cut(s) 320, 321, 322, 342, 427
BmrFI CCNGG 2 cut(s) 324, 333
BmsI GCATC 2 cut(s) 262, 405
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 350, 374, 422
Bse8I GATNNNNATC 1 cut(s) 127
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 2 cut(s) 277, 316
BseJI GATNNNNATC 1 cut(s) 127
BseLI CCNNNNNNNGG 4 cut(s) 338, 350, 374, 422
BseSI GKGCMC 1 cut(s) 323
BshFI GGCC 4 cut(s) 215, 321, 331, 366
BsiSI CCGG 1 cut(s) 324
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 4 cut(s) 338, 350, 374, 422
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 4 cut(s) 215, 321, 331, 366
Bsp120I GGGCCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 3 cut(s) 122, 173, 287
BspACI CCGC 2 cut(s) 315, 423
BspANI GGCC 4 cut(s) 215, 321, 331, 366
BspLI GGNNCC 5 cut(s) 320, 321, 322, 342, 427
BspMI ACCTGC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 2 cut(s) 168, 295
BsrGI TGTACA 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 122, 173, 287
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 345
BstAUI TGTACA 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 298, 421
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 277, 316
BstKTI GATC 3 cut(s) 125, 176, 290
BstMBI GATC 3 cut(s) 122, 173, 287
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 322, 331
BstSLI GKGCMC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 4 cut(s) 215, 321, 331, 366
BtsCI GGATG 2 cut(s) 277, 316
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 298, 421
Cfr13I GGNCC 7 cut(s) 213, 319, 320, 329, 341, 356, 365
Csp6I GTAC 2 cut(s) 21, 142
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviJI RGCY 5 cut(s) 112, 215, 321, 331, 366
CviKI_1 RGCY 5 cut(s) 112, 215, 321, 331, 366
CviQI GTAC 2 cut(s) 21, 142
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 124, 175, 289
DpnII GATC 3 cut(s) 122, 173, 287
DraIII CACNNNGTG 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 341, 356
Eco72I CACGTG 1 cut(s) 362
EcoO109I RGGNCCY 3 cut(s) 319, 320, 329
EcoRII CCWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 323
FaiI YATR 7 cut(s) 52, 54, 56, 63, 84, 348, 405
FaqI GGGAC 1 cut(s) 354
FauI CCCGC 1 cut(s) 308
FblI GTMKAC 1 cut(s) 31
FokI GGATG 2 cut(s) 284, 323
FriOI GRGCYC 1 cut(s) 323
FspBI CTAG 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 4 cut(s) 215, 321, 331, 366
HapII CCGG 1 cut(s) 324
HincII GTYRAC 2 cut(s) 32, 223
HindII GTYRAC 2 cut(s) 32, 223
HinfI GANTC 3 cut(s) 74, 117, 186
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 5 cut(s) 21, 32, 223, 359, 377
Hpy188I TCNGA 4 cut(s) 109, 122, 135, 271
Hpy188III TCNNGA 3 cut(s) 44, 190, 256
Hpy8I GTNNAC 5 cut(s) 21, 32, 223, 359, 377
Hpy99I CGWCG 2 cut(s) 36, 149
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 144, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 144, 361
Kzo9I GATC 3 cut(s) 122, 173, 287
LpnPI CCDG 8 cut(s) 29, 196, 276, 318, 337, 345, 429, 433
LweI GCATC 2 cut(s) 262, 405
MaeI CTAG 1 cut(s) 297
MaeII ACGT 2 cut(s) 144, 361
MalI GATC 3 cut(s) 124, 175, 289
MboI GATC 3 cut(s) 122, 173, 287
MboII GAAGA 2 cut(s) 112, 199
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 6, 24
MlyI GAGTC 3 cut(s) 68, 111, 180
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 146, 320, 329, 381
MseI TTAA 1 cut(s) 439
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 324, 333
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 429
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 122, 173, 287
NheI GCTAGC 1 cut(s) 296
NlaIV GGNNCC 5 cut(s) 320, 321, 322, 342, 427
PcsI WCGNNNNNNNCGW 1 cut(s) 153
Pfl23II CGTACG 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 374
PleI GAGTC 3 cut(s) 68, 111, 180
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 3 cut(s) 68, 111, 180
Ppu21I YACGTR 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 331
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 331
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 320, 321, 322, 342, 427
PspOMI GGGCCC 1 cut(s) 319
PspPI GGNCC 7 cut(s) 213, 319, 320, 329, 341, 356, 365
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 22, 143
RsaNI GTAC 2 cut(s) 21, 142
SalI GTCGAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 439
Sau3AI GATC 3 cut(s) 122, 173, 287
Sau96I GGNCC 7 cut(s) 213, 319, 320, 329, 341, 356, 365
SchI GAGTC 3 cut(s) 68, 111, 180
ScrFI CCNGG 2 cut(s) 324, 333
SduI GDGCHC 1 cut(s) 323
SetI ASST 5 cut(s) 114, 147, 364, 373, 418
SfaNI GCATC 2 cut(s) 262, 405
SinI GGWCC 2 cut(s) 341, 356
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 6, 24
SsiI CCGC 2 cut(s) 315, 423
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 322, 331
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 2 cut(s) 147, 364
TaqI TCGA 5 cut(s) 31, 72, 147, 257, 399
TasI AATT 2 cut(s) 6, 24
TatI WGTACW 1 cut(s) 20
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 341, 356
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.