Rroxscaffold_7G00172700

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013435
Physical Location & Seq
Forward (+)
12853413 .. 12856059
2647 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00172700.1

Sequence Viewer

Length: 297 bp
ATGGCGTACGTCGAGCGAGGCGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACGGATTTCTTCTGGGCCATCGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATCTGGTGCTAGCAAAAAATGGGATGGCGGGGGCCCCGGAGGGCCTGGAGGGGGACCGTATGGTGGTGGCCCACCTCGTGGACTTGACAATGTTCGTGGCATCGACCATAGTTCCTTACCTGCCTGCGGTTCCTGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

98

Amino Acids

10.33

Weight (kDa)

9.55

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 2 - 75 1.5e-22 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 230
AciI CCGC 2 cut(s) 180, 279
AclWI GGATC 2 cut(s) 33, 160
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 4 cut(s) 203, 215, 230, 278
AjnI CCWGG 1 cut(s) 196
AlwI GGATC 2 cut(s) 33, 160
AoxI GGCC 4 cut(s) 78, 184, 194, 220
ApaI GGGCCC 1 cut(s) 188
AspS9I GGNCC 6 cut(s) 78, 184, 185, 194, 206, 221
AsuC2I CCSGG 1 cut(s) 189
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 1 cut(s) 228
BccI CCATC 3 cut(s) 89, 118, 170
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 189, 198
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 6 cut(s) 78, 184, 185, 194, 206, 221
BmiI GGNNCC 5 cut(s) 185, 186, 187, 207, 283
BmrFI CCNGG 2 cut(s) 189, 198
BmsI GCATC 2 cut(s) 127, 261
BmtI GCTAGC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 215, 230, 278
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 142, 181
BseLI CCNNNNNNNGG 4 cut(s) 203, 215, 230, 278
BseSI GKGCMC 1 cut(s) 188
BshFI GGCC 4 cut(s) 80, 186, 196, 222
BsiSI CCGG 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 203, 215, 230, 278
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 4 cut(s) 80, 186, 196, 222
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 38, 152
BspACI CCGC 2 cut(s) 180, 279
BspANI GGCC 4 cut(s) 80, 186, 196, 222
BspLI GGNNCC 5 cut(s) 185, 186, 187, 207, 283
BspMI ACCTGC 1 cut(s) 280
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 33, 160
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 38, 152
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 163, 277
BstF5I GGATG 2 cut(s) 142, 181
BstKTI GATC 2 cut(s) 41, 155
BstMBI GATC 2 cut(s) 38, 152
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 187, 196
BstSLI GKGCMC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 4 cut(s) 80, 186, 196, 222
BtsCI GGATG 2 cut(s) 142, 181
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 163, 277
Cfr13I GGNCC 6 cut(s) 78, 184, 185, 194, 206, 221
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviJI RGCY 4 cut(s) 80, 186, 196, 222
CviKI_1 RGCY 4 cut(s) 80, 186, 196, 222
CviQI GTAC 1 cut(s) 7
DpnI GATC 2 cut(s) 40, 154
DpnII GATC 2 cut(s) 38, 152
DraIII CACNNNGTG 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 3 cut(s) 184, 185, 194
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 188
FaiI YATR 2 cut(s) 213, 261
FaqI GGGAC 1 cut(s) 219
FauI CCCGC 1 cut(s) 173
FokI GGATG 2 cut(s) 149, 188
FriOI GRGCYC 1 cut(s) 188
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 80, 186, 196, 222
HapII CCGG 1 cut(s) 189
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 2 cut(s) 88, 233
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 55, 121
Hpy8I GTNNAC 2 cut(s) 88, 233
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 2 cut(s) 38, 152
LpnPI CCDG 7 cut(s) 61, 141, 183, 202, 210, 285, 289
LweI GCATC 2 cut(s) 127, 261
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 9
MalI GATC 2 cut(s) 40, 154
MboI GATC 2 cut(s) 38, 152
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 188
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 11, 185, 194, 237
MseI TTAA 1 cut(s) 295
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 189, 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 285
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 38, 152
NheI GCTAGC 1 cut(s) 161
NlaIV GGNNCC 5 cut(s) 185, 186, 187, 207, 283
PcsI WCGNNNNNNNCGW 1 cut(s) 18
Pfl23II CGTACG 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 230
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 185, 186, 187, 207, 283
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 6 cut(s) 78, 184, 185, 194, 206, 221
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 295
Sau3AI GATC 2 cut(s) 38, 152
Sau96I GGNCC 6 cut(s) 78, 184, 185, 194, 206, 221
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 189, 198
SduI GDGCHC 1 cut(s) 188
SetI ASST 3 cut(s) 12, 229, 274
SfaNI GCATC 2 cut(s) 127, 261
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SsiI CCGC 2 cut(s) 180, 279
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 187, 196
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 12, 122, 255
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.