Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8078444.1

Orthogroup ID

OG0013435

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8078444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

cacacagacagactcgcagtttcatcatcaagtagtggtggctcagccggctgtgacgactatggggtcctcggaacagtaccagccgctactcctcggactcgactcacattcccggattcctgacttgtcatccgtcgcgattgaagaatttttggagcaaaggcctatagcattgaggtggtggcctaggctagtggcatgggagtcgagactgctatggattttatccggtgcgtctattctagtttcggttttcaattacatgctcagctttgtcacgcttatgttctgtggccatctgggttcattggagcttgctggagcctctattgcaagtgtgggaatccaaggtcttgcttatgggattatggtatgtaatccaactgtatctaacatactcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

135

Amino Acids

14.83

Weight (kDa)

5.36

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08230 AT4G08230
fragaria_vesca	FvH4_2g26460
malus_domestica	MD08G1168400.v1.1
prunus_persica	Prupe.1G502600_v2.0.a1
pyrus_communis	pycom08g14390
rosa_chinensis	RchiOBHm_Chr6g0295131
rosa_laevigata	RLG00000011818
rosa_multiflora	Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii	Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa	Rorug06G0249400
rosa_samantha	Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana	Rw6G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	147, 260
AluBI	AGCT	2 cut(s)	274, 317
AluI	AGCT	2 cut(s)	274, 317
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	3 cut(s)	165, 186, 296
ApoI	RAATTY	1 cut(s)	150
AspA2I	CCTAGG	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	298
BccI	CCATC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	190, 195, 246
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	87
BlnI	CCTAGG	1 cut(s)	189
BlpI	GCTNAGC	2 cut(s)	43, 270
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	68, 326
BmrFI	CCNGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	343
Bpu1102I	GCTNAGC	2 cut(s)	43, 270
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	70, 95, 189, 350
BsaWI	WCCGGW	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	70, 95, 189, 350
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	57, 284
BseRI	GAGGAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	167, 188, 298
BsiSI	CCGG	3 cut(s)	48, 116, 232
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	167, 188, 298
Bsp1720I	GCTNAGC	2 cut(s)	43, 270
Bsp68I	TCGCGA	1 cut(s)	141
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	167, 188, 298
BspCNI	CTCAG	2 cut(s)	56, 283
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	68, 326
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	4 cut(s)	70, 95, 189, 350
BssT1I	CCWWGG	2 cut(s)	189, 350
Bst4CI	ACNGT	2 cut(s)	79, 389
BstC8I	GCNNGC	2 cut(s)	49, 319
BstDEI	CTNAG	2 cut(s)	43, 270
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 333
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	167, 188, 298
BtsCI	GGATG	1 cut(s)	132
BtuMI	TCGCGA	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	49, 319
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	202, 266, 404
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	43, 270
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	189, 350
Eco147I	AGGCCT	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	189, 350
ErhI	CCWWGG	2 cut(s)	189, 350
FaeI	CATG	3 cut(s)	205, 269, 407
FatI	CATG	3 cut(s)	201, 265, 403
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	3 cut(s)	190, 195, 246
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	167, 188, 298
HapII	CCGG	3 cut(s)	48, 116, 232
HgaI	GACGC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	205, 269, 407
HinfI	GANTC	6 cut(s)	12, 100, 105, 119, 207, 346
HpaII	CCGG	3 cut(s)	48, 116, 232
Hpy188I	TCNGA	2 cut(s)	74, 99
Hpy188III	TCNNGA	3 cut(s)	123, 140, 211
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	79, 389
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 333
HpyF3I	CTNAG	2 cut(s)	43, 270
Hsp92II	CATG	3 cut(s)	205, 269, 407
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	158, 314, 324
LpnPI	CCDG	7 cut(s)	61, 96, 129, 136, 245, 288, 307
MaeI	CTAG	3 cut(s)	190, 195, 246
MaeIII	GTNAC	2 cut(s)	53, 278
MboII	GAAGA	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	2 cut(s)	150, 260
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	4 cut(s)	6, 94, 99, 216
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	80, 105, 172, 338
Mox20I	TGGCCA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	298
MslI	CAYNNNNRTG	3 cut(s)	179, 285, 402
Msp20I	TGGCCA	1 cut(s)	298
MspI	CCGG	3 cut(s)	48, 116, 232
MspR9I	CCNGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	48, 333
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	116
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	3 cut(s)	205, 269, 407
NlaIV	GGNNCC	2 cut(s)	68, 326
NmuCI	GTSAC	2 cut(s)	53, 278
NruI	TCGCGA	1 cut(s)	141
NspI	RCATGY	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	119, 346
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	4 cut(s)	6, 94, 99, 215
PpsI	GAGTC	4 cut(s)	6, 94, 99, 215
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	68, 326
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	141
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	3 cut(s)	179, 285, 402
SatI	GCNGC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	4 cut(s)	6, 94, 99, 216
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	4 cut(s)	183, 276, 319, 356
SfcI	CTRYAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	3 cut(s)	179, 285, 402
Sse9I	AATT	2 cut(s)	150, 260
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	3 cut(s)	190, 195, 246
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	189, 350
TaaI	ACNGT	2 cut(s)	79, 389
TaqI	TCGA	2 cut(s)	103, 210
TasI	AATT	2 cut(s)	150, 260
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	119, 346
TseFI	GTSAC	2 cut(s)	53, 278
Tsp45I	GTSAC	2 cut(s)	53, 278
TspDTI	ATGAA	2 cut(s)	12, 298
TspGWI	ACGGA	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	189
XspI	CTAG	3 cut(s)	190, 195, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.