Prupe.1G502600_v2.0.a1

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013435
Physical Location & Seq
Forward (+)
41570824 .. 41573876
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G502600.1

Sequence Viewer

Length: 306 bp
ATGGCGTACGTTGAGCGAGGTGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACCGACTTCTTTTGGGCCATTGTCAACCTCATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATTAGCTTCTGGAAAGAAATGGGATGGTGGTGGCCCCGGAGGCCCTGGAGGGGGACCATATGGTGGTCGTCCACGTGGGCCACCTCGTGGACTAGACAATGTTCGCGGAATTGACCATAGTTCTCTACCTGCCTGTGGTTCCTGCTGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

102

Amino Acids

10.77

Weight (kDa)

9.88

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccB7I CCANNNNNTGG 2 cut(s) 215, 239
AccII CGCG 1 cut(s) 258
AciI CCGC 2 cut(s) 258, 300
AclWI GGATC 1 cut(s) 33
AcvI CACGTG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 5 cut(s) 202, 203, 215, 239, 287
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 78, 184, 193, 230
ApeKI GCWGC 1 cut(s) 297
AspS9I GGNCC 5 cut(s) 78, 185, 194, 206, 230
AsuC2I CCSGG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 206
BauI CACGAG 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 227
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 118, 170
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 192
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
Bme1390I CCNGG 2 cut(s) 189, 198
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 5 cut(s) 78, 185, 194, 206, 230
BmiI GGNNCC 3 cut(s) 187, 207, 292
BmrFI CCNGG 2 cut(s) 189, 198
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 187, 196
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 203, 215, 239, 287
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 187, 196
BseGI GGATG 2 cut(s) 142, 181
BseLI CCNNNNNNNGG 5 cut(s) 202, 203, 215, 239, 287
BseXI GCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 4 cut(s) 80, 186, 195, 232
BsiSI CCGG 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 5 cut(s) 202, 203, 215, 239, 287
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 4 cut(s) 80, 186, 195, 232
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 2 cut(s) 258, 300
BspANI GGCC 4 cut(s) 80, 186, 195, 232
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 187, 207, 292
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 187, 196
BssMI GATC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 227
BstF5I GGATG 2 cut(s) 142, 181
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 187, 196
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 284
BsuRI GGCC 4 cut(s) 80, 186, 195, 232
BtsCI GGATG 2 cut(s) 142, 181
BveI ACCTGC 1 cut(s) 289
Cfr13I GGNCC 5 cut(s) 78, 185, 194, 206, 230
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 5 cut(s) 80, 158, 186, 195, 232
CviKI_1 RGCY 5 cut(s) 80, 158, 186, 195, 232
CviQI GTAC 1 cut(s) 7
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
DraIII CACNNNGTG 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 196
FaiI YATR 4 cut(s) 95, 211, 213, 270
FaqI GGGAC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 2 cut(s) 149, 188
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 80, 186, 195, 232
HapII CCGG 1 cut(s) 189
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 3 cut(s) 88, 224, 242
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 55, 121, 162
Hpy8I GTNNAC 3 cut(s) 88, 224, 242
HpyCH4IV ACGT 2 cut(s) 9, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 9, 226
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 147, 183, 202, 210, 294, 298
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 9, 226
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 11, 101, 185, 194, 246
MseI TTAA 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 189, 198
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 38
NlaIV GGNNCC 3 cut(s) 187, 207, 292
Pfl23II CGTACG 1 cut(s) 6
PflMI CCANNNNNTGG 2 cut(s) 215, 239
PkrI GCNGC 1 cut(s) 299
PleI GAGTC 1 cut(s) 45
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 1 cut(s) 45
Ppu21I YACGTR 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 196
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 196
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 3 cut(s) 187, 207, 292
PspPI GGNCC 5 cut(s) 78, 185, 194, 206, 230
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 304
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 5 cut(s) 78, 185, 194, 206, 230
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 189, 198
SetI ASST 7 cut(s) 12, 22, 93, 160, 229, 238, 283
SfaNI GCATC 1 cut(s) 127
SfiI GGCCNNNNNGGCC 1 cut(s) 192
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 261
SsiI CCGC 2 cut(s) 258, 300
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 187, 196
TaiI ACGT 2 cut(s) 12, 229
TaqI TCGA 1 cut(s) 122
TasI AATT 1 cut(s) 261
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TseI GCWGC 1 cut(s) 297
Van91I CCANNNNNTGG 2 cut(s) 215, 239
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.