Rh6CG376800

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013435
Physical Location & Seq
Reverse (-)
56354379 .. 56358521
4143 bp
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UTR
Exon/CDS
Intron
Rh6CG376800.1

Sequence Viewer

Length: 411 bp
ATGAGTATTCTGGTGTCTTTTGAATCAGGCGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACGGATTTCTTCTGGGCCATCGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATCTGGTGCTAGCAAAAAATGGGATGGCGGGGGCCCCGGAGGGCCTGGAGGGGGACCGTATGGTGGTGGTCCACGTGGCCCACCTCGTGGACTTGACAATGTTCGTGGCATCGACCATAGTAAGTTGACTCTTCTGCTTCCTATGTTTGGTTTTCTAATTATTTTGGTTTCTAACATTCCTTATTACAAATGTTGCTCTACTTCTCAACACTCAGGTTCCTTACCTGCCTGCGGTTCCTGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

136

Amino Acids

14.46

Weight (kDa)

9.51

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 9 - 83 1.3e-20 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 2 cut(s) 189, 393
AclWI GGATC 2 cut(s) 42, 169
AcvI CACGTG 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 248
AfiI CCNNNNNNNGG 5 cut(s) 212, 224, 248, 308, 392
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 205
AlwI GGATC 2 cut(s) 42, 169
AoxI GGCC 4 cut(s) 87, 193, 203, 238
ApaI GGGCCC 1 cut(s) 197
AspS9I GGNCC 7 cut(s) 87, 193, 194, 203, 215, 230, 239
AsuC2I CCSGG 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 170
AvaII GGWCC 2 cut(s) 215, 230
BaeGI GKGCMC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 197
BauI CACGAG 1 cut(s) 246
BbrPI CACGTG 1 cut(s) 236
BccI CCATC 3 cut(s) 98, 127, 179
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 198, 207
Bme18I GGWCC 2 cut(s) 215, 230
BmgT120I GGNCC 7 cut(s) 87, 193, 194, 203, 215, 230, 239
BmiI GGNNCC 6 cut(s) 194, 195, 196, 216, 379, 397
BmrFI CCNGG 2 cut(s) 198, 207
BmsI GCATC 2 cut(s) 136, 279
BmtI GCTAGC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 224, 248, 308, 392
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 151, 190
BseLI CCNNNNNNNGG 5 cut(s) 212, 224, 248, 308, 392
BseMII CTCAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 4 cut(s) 89, 195, 205, 240
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 5 cut(s) 212, 224, 248, 308, 392
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 4 cut(s) 89, 195, 205, 240
Bsp120I GGGCCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 47, 161
BspACI CCGC 2 cut(s) 189, 393
BspANI GGCC 4 cut(s) 89, 195, 205, 240
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 6 cut(s) 194, 195, 196, 216, 379, 397
BspMI ACCTGC 1 cut(s) 394
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 42, 169
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 47, 161
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 172, 391
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 151, 190
BstKTI GATC 2 cut(s) 50, 164
BstMBI GATC 2 cut(s) 47, 161
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 196, 205
BstSLI GKGCMC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 4 cut(s) 89, 195, 205, 240
BtsCI GGATG 2 cut(s) 151, 190
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 172, 391
Cfr13I GGNCC 7 cut(s) 87, 193, 194, 203, 215, 230, 239
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviJI RGCY 4 cut(s) 89, 195, 205, 240
CviKI_1 RGCY 4 cut(s) 89, 195, 205, 240
DdeI CTNAG 1 cut(s) 373
DpnI GATC 2 cut(s) 49, 163
DpnII GATC 2 cut(s) 47, 161
DraIII CACNNNGTG 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 215, 230
Eco72I CACGTG 1 cut(s) 236
EcoO109I RGGNCCY 3 cut(s) 193, 194, 203
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 197
FaiI YATR 3 cut(s) 222, 279, 305
FaqI GGGAC 1 cut(s) 228
FauI CCCGC 1 cut(s) 182
FokI GGATG 2 cut(s) 158, 197
FriOI GRGCYC 1 cut(s) 197
FspBI CTAG 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 4 cut(s) 89, 195, 205, 240
HapII CCGG 1 cut(s) 198
HincII GTYRAC 2 cut(s) 97, 288
HindII GTYRAC 2 cut(s) 97, 288
HinfI GANTC 3 cut(s) 23, 60, 289
HpaII CCGG 1 cut(s) 198
Hpy166II GTNNAC 4 cut(s) 97, 233, 251, 288
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 64, 130
Hpy8I GTNNAC 4 cut(s) 97, 233, 251, 288
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 235
Kzo9I GATC 2 cut(s) 47, 161
LpnPI CCDG 9 cut(s) 12, 70, 150, 192, 211, 219, 360, 399, 403
LweI GCATC 2 cut(s) 136, 279
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 235
MalI GATC 2 cut(s) 49, 163
MboI GATC 2 cut(s) 47, 161
MboII GAAGA 2 cut(s) 73, 284
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 318
MlyI GAGTC 2 cut(s) 54, 283
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 194, 203, 255
MseI TTAA 1 cut(s) 409
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 198, 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 399
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 47, 161
NheI GCTAGC 1 cut(s) 170
NlaIV GGNNCC 6 cut(s) 194, 195, 196, 216, 379, 397
PfeI GAWTC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 248
PleI GAGTC 2 cut(s) 54, 283
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
PpsI GAGTC 2 cut(s) 54, 283
Ppu21I YACGTR 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 205
PspCI CACGTG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 6 cut(s) 194, 195, 196, 216, 379, 397
PspOMI GGGCCC 1 cut(s) 193
PspPI GGNCC 7 cut(s) 87, 193, 194, 203, 215, 230, 239
PsuI RGATCY 1 cut(s) 161
SaqAI TTAA 1 cut(s) 409
Sau3AI GATC 2 cut(s) 47, 161
Sau96I GGNCC 7 cut(s) 87, 193, 194, 203, 215, 230, 239
SchI GAGTC 2 cut(s) 54, 283
ScrFI CCNGG 2 cut(s) 198, 207
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 238, 247, 379, 388
SfaNI GCATC 2 cut(s) 136, 279
SinI GGWCC 2 cut(s) 215, 230
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 189, 393
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 196, 205
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 131, 273
TasI AATT 1 cut(s) 318
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TspGWI ACGGA 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 215, 230
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.