Rh6BG370200

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013435
Physical Location & Seq
Reverse (-)
59998274 .. 60002886
4613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG370200.1

Sequence Viewer

Length: 339 bp
ATGCCTTGTGCTTTTGGACACTCGATGAGTATTCTGGTGTCTTTTGAATTAGGCGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACAATAACGGACTTCTTCTGGGCCATCGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCGGATGCTTACAGAAAAGGATCTGGTGCTAGCAAAAAATGGGATGGCGGGGGCCCCGGAGGGCCTGGAGGGGGACCGTATGGTGGTGGTCCACGTGGCCCACCTCGTGGACTTGACAATGTTCGTGGCATCGACCATAGTTCCTTACCTGCCTGCGGTTCCTGCTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

112

Amino Acids

11.74

Weight (kDa)

9.46

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 18 - 91 1.5e-20 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 2 cut(s) 213, 321
AclWI GGATC 2 cut(s) 66, 193
AcvI CACGTG 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 236, 248, 272, 320
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 229
AlwI GGATC 2 cut(s) 66, 193
AoxI GGCC 4 cut(s) 111, 217, 227, 262
ApaI GGGCCC 1 cut(s) 221
AspS9I GGNCC 7 cut(s) 111, 217, 218, 227, 239, 254, 263
AsuC2I CCSGG 1 cut(s) 222
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 239, 254
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 221
BauI CACGAG 1 cut(s) 270
BbrPI CACGTG 1 cut(s) 260
BccI CCATC 3 cut(s) 122, 151, 203
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 222, 231
Bme18I GGWCC 2 cut(s) 239, 254
BmgT120I GGNCC 7 cut(s) 111, 217, 218, 227, 239, 254, 263
BmiI GGNNCC 5 cut(s) 218, 219, 220, 240, 325
BmrFI CCNGG 2 cut(s) 222, 231
BmsI GCATC 2 cut(s) 160, 303
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 248, 272, 320
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 175, 214
BseLI CCNNNNNNNGG 4 cut(s) 236, 248, 272, 320
BseSI GKGCMC 1 cut(s) 221
BshFI GGCC 4 cut(s) 113, 219, 229, 264
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 4 cut(s) 236, 248, 272, 320
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 4 cut(s) 113, 219, 229, 264
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 71, 185
BspACI CCGC 2 cut(s) 213, 321
BspANI GGCC 4 cut(s) 113, 219, 229, 264
BspLI GGNNCC 5 cut(s) 218, 219, 220, 240, 325
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 66, 193
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 71, 185
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 196, 319
BstF5I GGATG 2 cut(s) 175, 214
BstKTI GATC 2 cut(s) 74, 188
BstMBI GATC 2 cut(s) 71, 185
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 220, 229
BstSLI GKGCMC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 4 cut(s) 113, 219, 229, 264
BtsCI GGATG 2 cut(s) 175, 214
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 196, 319
Cfr13I GGNCC 7 cut(s) 111, 217, 218, 227, 239, 254, 263
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviJI RGCY 4 cut(s) 113, 219, 229, 264
CviKI_1 RGCY 4 cut(s) 113, 219, 229, 264
DpnI GATC 2 cut(s) 73, 187
DpnII GATC 2 cut(s) 71, 185
DraIII CACNNNGTG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 239, 254
Eco72I CACGTG 1 cut(s) 260
EcoO109I RGGNCCY 3 cut(s) 217, 218, 227
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 221
FaiI YATR 2 cut(s) 246, 303
FaqI GGGAC 1 cut(s) 252
FauI CCCGC 1 cut(s) 206
FokI GGATG 2 cut(s) 182, 221
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 4 cut(s) 113, 219, 229, 264
HapII CCGG 1 cut(s) 222
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 84
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 3 cut(s) 121, 257, 275
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 88, 154
Hpy8I GTNNAC 3 cut(s) 121, 257, 275
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 259
Kzo9I GATC 2 cut(s) 71, 185
LpnPI CCDG 8 cut(s) 20, 94, 174, 216, 235, 243, 327, 331
LweI GCATC 2 cut(s) 160, 303
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 259
MalI GATC 2 cut(s) 73, 187
MboI GATC 2 cut(s) 71, 185
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 218, 227, 279
MseI TTAA 1 cut(s) 337
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 222, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 222
NdeII GATC 2 cut(s) 71, 185
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 5 cut(s) 218, 219, 220, 240, 325
PflMI CCANNNNNTGG 1 cut(s) 272
PleI GAGTC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 5 cut(s) 218, 219, 220, 240, 325
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 7 cut(s) 111, 217, 218, 227, 239, 254, 263
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 1 cut(s) 337
Sau3AI GATC 2 cut(s) 71, 185
Sau96I GGNCC 7 cut(s) 111, 217, 218, 227, 239, 254, 263
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 222, 231
SduI GDGCHC 1 cut(s) 221
SetI ASST 3 cut(s) 262, 271, 316
SfaNI GCATC 2 cut(s) 160, 303
SinI GGWCC 2 cut(s) 239, 254
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 213, 321
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 220, 229
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 262
TaqI TCGA 3 cut(s) 23, 155, 297
TasI AATT 1 cut(s) 47
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TspGWI ACGGA 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 239, 254
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.