MD08G1168400.v1.1

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013435
Physical Location & Seq
Forward (+)
20027615 .. 20030935
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1168400.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGCGTACGTCGAGCGAGGTGTTGTGAAATCCAAGCGATCCATTTGGCGACTCAAGACGATAACTGATTTCTTCTGGGCCATTGTCAACTTGATAGGCGTGTTTTTTGCTACAATGTTCTCGATGGAAAAGTCTGATGCTTACAAAAAAGGATCTGCTTCTGGAAAGAAATGGGATGGTGGTGGCCCCGGAGGCCCTGGAGGGCCATATGGTGGCCGTCCACGCGGGCCACCTCGCGGACTAGACAATGTCCGTGGAATTGACCATAGTAAGTGCTGTGCCCGCCTGTGGTTCCTGCTGTGGTTAAGTAGGGGAAGAGCATATCAGCATGATGTCTTGTGCATCTTTTTCATTGTGCCTCGAAACTTTTTAGGAATGATAATTGGTATGTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

10.2

Isoelectric Point (pI)

20.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelK_SelG PF10961 2 - 78 1.6e-22 Selenoprotein SelK_SelG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 2 cut(s) 225, 237
AciI CCGC 3 cut(s) 225, 237, 283
AclWI GGATC 2 cut(s) 33, 160
AcoI YGGCCR 1 cut(s) 214
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 212, 236, 288
AjnI CCWGG 1 cut(s) 196
AlwI GGATC 2 cut(s) 33, 160
AoxI GGCC 6 cut(s) 78, 184, 193, 203, 214, 227
AspS9I GGNCC 5 cut(s) 78, 185, 194, 203, 227
AsuC2I CCSGG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 283
BccI CCATC 2 cut(s) 118, 170
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 189, 198
BmgT120I GGNCC 5 cut(s) 78, 185, 194, 203, 227
BmiI GGNNCC 2 cut(s) 187, 293
BmrFI CCNGG 2 cut(s) 189, 198
BmsI GCATC 2 cut(s) 127, 351
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 187, 196, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 236, 288
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 187, 196, 253
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 3 cut(s) 212, 236, 288
BseSI GKGCMC 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 225, 237
BshFI GGCC 6 cut(s) 80, 186, 195, 205, 216, 229
BsiSI CCGG 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 212, 236, 288
BsnI GGCC 6 cut(s) 80, 186, 195, 205, 216, 229
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 38, 152
BspACI CCGC 3 cut(s) 225, 237, 283
BspANI GGCC 6 cut(s) 80, 186, 195, 205, 216, 229
BspFNI CGCG 2 cut(s) 225, 237
BspLI GGNNCC 2 cut(s) 187, 293
BspPI GGATC 2 cut(s) 33, 160
BspQI GCTCTTC 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 187, 196, 253
BssMI GATC 2 cut(s) 38, 152
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 227, 283
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 2 cut(s) 225, 237
BstKTI GATC 2 cut(s) 41, 155
BstMBI GATC 2 cut(s) 38, 152
BstMWI GCNNNNNNNGC 3 cut(s) 192, 222, 282
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 187, 196
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 225, 237
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 6 cut(s) 80, 186, 195, 205, 216, 229
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 227, 283
Cfr13I GGNCC 5 cut(s) 78, 185, 194, 203, 227
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 1 cut(s) 329
CviJI RGCY 6 cut(s) 80, 186, 195, 205, 216, 229
CviKI_1 RGCY 6 cut(s) 80, 186, 195, 205, 216, 229
CviQI GTAC 1 cut(s) 7
DpnI GATC 2 cut(s) 40, 154
DpnII GATC 2 cut(s) 38, 152
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 332
FaiI YATR 6 cut(s) 208, 210, 267, 322, 330, 389
FatI CATG 1 cut(s) 328
FauI CCCGC 2 cut(s) 218, 290
FauNDI CATATG 1 cut(s) 208
FokI GGATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 6 cut(s) 80, 186, 195, 205, 216, 229
HapII CCGG 1 cut(s) 189
Hin1II CATG 1 cut(s) 332
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 2 cut(s) 88, 221
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 55, 121, 162
Hpy8I GTNNAC 2 cut(s) 88, 221
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 222, 282
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 332
Kzo9I GATC 2 cut(s) 38, 152
LguI GCTCTTC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 61, 147, 183, 202, 210, 299, 308
LweI GCATC 2 cut(s) 127, 351
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 390
MalI GATC 2 cut(s) 40, 154
MboI GATC 2 cut(s) 38, 152
MboII GAAGA 2 cut(s) 64, 327
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 2 cut(s) 258, 381
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 5 cut(s) 11, 185, 194, 243, 369
MseI TTAA 1 cut(s) 305
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 189, 198
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 2 cut(s) 225, 237
MwoI GCNNNNNNNGC 3 cut(s) 192, 222, 282
NciI CCSGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 208
NdeII GATC 2 cut(s) 38, 152
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 2 cut(s) 187, 293
PciSI GCTCTTC 1 cut(s) 310
Pfl23II CGTACG 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 212
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 187, 293
PspPI GGNCC 5 cut(s) 78, 185, 194, 203, 227
PsuI RGATCY 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 2 cut(s) 38, 152
Sau96I GGNCC 5 cut(s) 78, 185, 194, 203, 227
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 189, 198
SduI GDGCHC 1 cut(s) 283
SetI ASST 3 cut(s) 12, 22, 235
SfaNI GCATC 2 cut(s) 127, 351
SfcI CTRYAG 1 cut(s) 395
SfiI GGCCNNNNNGGCC 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 258, 381
SsiI CCGC 3 cut(s) 225, 237, 283
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 187, 196
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 12
TaqI TCGA 3 cut(s) 12, 122, 361
TasI AATT 2 cut(s) 258, 381
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 212
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.