Rorug06G0249400

Selenoprotein SelK_SelG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013435
Physical Location & Seq
Reverse (-)
39570024 .. 39570350
327 bp
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UTR
Exon/CDS
Intron
Rorug06G0249400.1

Sequence Viewer

Length: 327 bp
ATGGTGAGGCTGACCGCTGAAGCTTGCAGAGTTGGATTACTTTTTGCCATTCACCAAGGCTGGAAAGTGGTGGTGGTGGAGGTGGAGAGTGATTCGTCTTTGTTAGTTGCTGCTCTAAACCATTCGGTGGAAAATATTTCTGAGGTTAATCGAATTCTTGATAACTGTAAAGATTATATGCAAGCTTTCGATTATTTTGAAATTCGACACAATTATCGTGAAGCAAATAGTGTGGCTAATAGATTGGCACACTTTACTAGTTTAGGCCATTCTATTGATCTTTGTTTAGAGGGAGCCTCCTGCATTCTTGCAGGATGTGCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelK_SelG

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

5.39

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 85 9.1e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08230 AT4G08230
fragaria_vesca FvH4_2g26460
malus_domestica MD08G1168400.v1.1
prunus_persica Prupe.1G502600_v2.0.a1
pyrus_communis pycom08g14390
rosa_chinensis RchiOBHm_Chr6g0295131
rosa_laevigata RLG00000011818
rosa_multiflora Rmu_co8078444.1_g000001 Rmu_sc0002096.1_g000018
rosa_roxburghii Rroxscaffold_171G00441380 Rroxscaffold_7G00172700
rosa_rugosa Rorug06G0249400
rosa_samantha Rh6AG362400 Rh6BG370200 Rh6CG376800 Rh6DG363200
rosa_wichuraiana Rw6G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AciI CCGC 1 cut(s) 15
AcsI RAATTY 2 cut(s) 153, 201
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 200
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 2 cut(s) 23, 185
AluI AGCT 2 cut(s) 23, 185
Alw21I GWGCWC 1 cut(s) 322
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 153, 201
AsuHPI GGTGA 2 cut(s) 16, 44
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 97
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 127
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 25, 183
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 25, 183
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviJI RGCY 7 cut(s) 10, 23, 60, 185, 236, 267, 296
CviKI_1 RGCY 7 cut(s) 10, 23, 60, 185, 236, 267, 296
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaiI YATR 3 cut(s) 177, 179, 325
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 267
HindIII AAGCTT 2 cut(s) 21, 183
HinfI GANTC 1 cut(s) 92
HphI GGTGA 2 cut(s) 16, 44
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 158, 218
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 27, 181, 303, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 3 cut(s) 46, 297, 313
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 258
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 153, 201, 211
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 4 cut(s) 73, 136, 283, 307
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 295
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 25, 84, 147, 187
SgeI CNNG 9 cut(s) 36, 68, 73, 170, 194, 230, 270, 312, 320
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 3 cut(s) 153, 201, 211
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 151, 189, 205
TasI AATT 3 cut(s) 153, 201, 211
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 127
XapI RAATTY 2 cut(s) 153, 201
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.