Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Forward (+)

5194657 .. 5196763

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGAGGTGTCGGAGGTCCGTTGCTGTCAATCGGAGATCTTCTCGCCGATCTCGGTGATGAAACTGGCCACTCCCCGCAAAATCATCCAAATCCTGAAGTTTCATCAAAATCATACTCTGATGATACCATCTCTGGACCCTTGGATCTAACCCGACTCTTTCAGGAGAACTATGATAAACTTAACGATGCGTTTGCTGGTTCTGATCACTCATGGACCTCCCTAACATTAGAGCTCTGCACTTCCCTAGAGACTGCTAACAAGTTGGTCCATGCCACAACCACAAATGCTAGATTGTTGTCAGAGAAGGTTGAAGAACTCGAGAAAATAGTGAAACGAGGAGACTCAGCAGTCGCAGCTGCCAGAACGGTTCACGCCACGGTTAACCAGAAAGGATTACCCTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.56

Weight (kDa)

5.08

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	2 cut(s)	235, 359
AluI	AGCT	2 cut(s)	235, 359
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	245, 336
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	356, 359
AspS9I	GGNCC	4 cut(s)	17, 137, 216, 268
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	4 cut(s)	17, 137, 216, 268
BalI	TGGCCA	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	346, 368
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	245, 336
BfaI	CTAG	2 cut(s)	248, 291
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	357, 360
BlsI	GCNGC	2 cut(s)	358, 361
Bme18I	GGWCC	4 cut(s)	17, 137, 216, 268
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	17, 137, 216, 268
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BsaAI	YACGTR	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	141, 378
Bse1I	ACTGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	141, 378
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	346, 368
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	245, 336
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	37, 49, 145, 205
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	141, 378
BssMI	GATC	4 cut(s)	37, 49, 145, 205
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	370, 382
BstBAI	YACGTR	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	40, 52, 148, 208
BstMAI	GTCTC	2 cut(s)	245, 336
BstMBI	GATC	4 cut(s)	37, 49, 145, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	346, 368
BstX2I	RGATCY	2 cut(s)	37, 145
BstYI	RGATCY	2 cut(s)	37, 145
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	85
Cfr13I	GGNCC	4 cut(s)	17, 137, 216, 268
CviAII	CATG	2 cut(s)	213, 272
CviJI	RGCY	3 cut(s)	69, 235, 359
CviKI_1	RGCY	3 cut(s)	69, 235, 359
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	4 cut(s)	39, 51, 147, 207
DpnII	GATC	4 cut(s)	37, 49, 145, 205
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	4 cut(s)	17, 137, 216, 268
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	216, 275
FaiI	YATR	4 cut(s)	115, 174, 214, 273
FatI	CATG	2 cut(s)	212, 271
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	357, 360
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	357, 360
FspBI	CTAG	2 cut(s)	248, 291
GluI	GCNGC	2 cut(s)	357, 360
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	216, 275
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	156, 344
HpaI	GTTAAC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	373, 385
Hpy188I	TCNGA	5 cut(s)	14, 35, 121, 205, 304
Hpy188III	TCNNGA	4 cut(s)	95, 135, 164, 322
Hpy8I	GTNNAC	2 cut(s)	373, 385
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	370, 382
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	216, 275
Ksp22I	TGATCA	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	37, 49, 145, 205
LpnPI	CCDG	7 cut(s)	51, 108, 120, 149, 183, 376, 401
Lsp1109I	GCAGC	2 cut(s)	346, 368
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	248, 291
MaeII	ACGT	1 cut(s)	407
MalI	GATC	4 cut(s)	39, 51, 147, 207
MboI	GATC	4 cut(s)	37, 49, 145, 205
MboII	GAAGA	2 cut(s)	32, 326
MflI	RGATCY	2 cut(s)	37, 145
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	150, 338
MnlI	CCTC	3 cut(s)	8, 229, 332
Mox20I	TGGCCA	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	183, 384
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	4 cut(s)	37, 49, 145, 205
NlaIII	CATG	2 cut(s)	216, 275
NlaIV	GGNNCC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	358, 361
PleI	GAGTC	2 cut(s)	150, 338
PpsI	GAGTC	2 cut(s)	150, 338
Ppu21I	YACGTR	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	4 cut(s)	17, 137, 216, 268
PsuI	RGATCY	2 cut(s)	37, 145
PvuII	CAGCTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	183, 384
SatI	GCNGC	2 cut(s)	357, 360
Sau3AI	GATC	4 cut(s)	37, 49, 145, 205
Sau96I	GGNCC	4 cut(s)	17, 137, 216, 268
SchI	GAGTC	2 cut(s)	150, 338
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	10, 19, 221, 237, 312, 361, 410
SfaNI	GCATC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	4 cut(s)	17, 137, 216, 268
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	248, 291
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	370, 382
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	183, 384
Tru9I	TTAA	2 cut(s)	183, 384
TseI	GCWGC	2 cut(s)	356, 359
TspDTI	ATGAA	2 cut(s)	75, 93
TspGWI	ACGGA	1 cut(s)	9
VpaK11BI	GGWCC	4 cut(s)	17, 137, 216, 268
XhoI	CTCGAG	1 cut(s)	320
XspI	CTAG	2 cut(s)	248, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.