Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Forward (+)

56270957 .. 56272999

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG363700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAAGGTGTGGGAGGACCGCTTCTATGCATAGGCGATCTGCTGAGCGATGTGGGAGAATCAGACGCTTCACCTCCACCGCAACACCATGAGCCCTCGGCTTCTGCTTCTATTTCCACCTCTACAAGTCAAAACCCGGACCTTACCAACGTGTTCCAGGAGAACTATGAGCAGCTGAATGAGGCGCTTGCCGGTACAGACCACTCATGGGCAGCTCTTACTCTGAAGCTATGCGGTGCTCTGGAAACTGCAAACAAGTTGGTTAAGACAACCAACTCGAATGTCACATTGTTGTCAGAGAAGGTTGGAGATCTTGAGCAAGTTATCAAGAGGGCAGATTCTGCCATAGCAGCAGCAAGGGTTGTCCATGCCTCACTTAATGAAAAAGAGGGTTCACTCATTGGCAATCAAAATATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.66

Weight (kDa)

4.79

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 80, 234
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	175, 215, 229
AluI	AGCT	3 cut(s)	175, 215, 229
Alw21I	GWGCWC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	341
ApeKI	GCWGC	4 cut(s)	172, 212, 350, 353
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	17, 139
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	17, 139
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	184, 224, 362, 365
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	4 cut(s)	173, 213, 351, 354
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	174, 214, 352, 355
Bme1390I	CCNGG	2 cut(s)	137, 158
Bme18I	GGWCC	2 cut(s)	17, 139
BmgT120I	GGNCC	2 cut(s)	17, 139
BmrFI	CCNGG	2 cut(s)	137, 158
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	184, 224, 362, 365
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	137, 192
BslI	CCNNNNNNNGG	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	96, 241
Bsp143I	GATC	2 cut(s)	37, 310
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	3 cut(s)	20, 80, 234
BspCNI	CTCAG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	37, 310
Bst2UI	CCWGG	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	40, 313
BstMBI	GATC	2 cut(s)	37, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 350
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	135, 156
BstV1I	GCAGC	4 cut(s)	184, 224, 362, 365
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	17, 139
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	89, 207, 368
CviJI	RGCY	5 cut(s)	94, 101, 175, 215, 229
CviKI_1	RGCY	5 cut(s)	94, 101, 175, 215, 229
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	39, 312
DpnII	GATC	2 cut(s)	37, 310
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	17, 139
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	3 cut(s)	92, 210, 371
FaiI	YATR	8 cut(s)	28, 32, 90, 168, 208, 232, 347, 369
FatI	CATG	3 cut(s)	88, 206, 367
Fnu4HI	GCNGC	4 cut(s)	173, 213, 351, 354
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	173, 213, 351, 354
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	173, 213, 351, 354
HaeII	RGCGCY	1 cut(s)	188
HapII	CCGG	2 cut(s)	137, 192
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	92, 210, 371
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	59, 338
HpaII	CCGG	2 cut(s)	137, 192
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	64, 225, 298
Hpy188III	TCNNGA	3 cut(s)	242, 314, 328
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	30, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 350
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	92, 210, 371
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	37, 310
LpnPI	CCDG	5 cut(s)	143, 150, 170, 205, 227
Lsp1109I	GCAGC	4 cut(s)	184, 224, 362, 365
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	39, 312
MboI	GATC	2 cut(s)	37, 310
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	96, 241
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	8 cut(s)	8, 84, 106, 130, 175, 324, 382, 382
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	2 cut(s)	264, 378
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	2 cut(s)	137, 192
MspR9I	CCNGG	2 cut(s)	137, 158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	341, 350
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	37, 310
NlaIII	CATG	3 cut(s)	92, 210, 371
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	59, 338
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	174, 214, 352, 355
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	17, 139
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	264, 378
SatI	GCNGC	4 cut(s)	173, 213, 351, 354
Sau3AI	GATC	2 cut(s)	37, 310
Sau96I	GGNCC	2 cut(s)	17, 139
ScrFI	CCNGG	2 cut(s)	137, 158
SduI	GDGCHC	2 cut(s)	96, 241
SetI	ASST	9 cut(s)	10, 76, 122, 144, 153, 177, 217, 231, 306
SinI	GGWCC	2 cut(s)	17, 139
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	3 cut(s)	20, 80, 234
StyD4I	CCNGG	2 cut(s)	135, 156
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	59, 338
Tru1I	TTAA	2 cut(s)	264, 378
Tru9I	TTAA	2 cut(s)	264, 378
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	172, 212, 350, 353
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	17, 396
VpaK11BI	GGWCC	2 cut(s)	17, 139
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.