Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Reverse (-)

19964249 .. 19967509

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1167900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGAGAGGTGTAGGAGGTCCTCTTCTATGCATTGGCGATCTGCTGAGCGACGTGGGGGGGGGGGGGGGGGGGGAGAGGCAGTTGCTTCGCCACCACCGCAACAACATGAGCCCTCGCCGTCGTCTTCGTCTGTTTCCAGCTCCGCTCAGAGCTTGGACCTCATCAAGTTGTATCAGGTTGGTGGAGAACTATGAGCAGTTGAATGAGGCGCTTGGCGGTACCGACCACTCATGGGCAGCTCTTACTTTGAAGTTATGCAGTGCTCTGCAAACCGCAAACAAGTTAGTTCAATCAACAAACTCTAATGTCATGTTGTTGTCGGAGAAGGTTGGAGAGCTTGCGGGAGTTGTCAAGAGGGCAGATTCTGCCATGGCTGCAGCAAGGGTCGTCCATGGTTCACTAAACAGAAAGGAAGTACCACTTGATAGCAATCAAAACGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.06

Weight (kDa)

9.93

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	148
AciI	CCGC	5 cut(s)	100, 146, 219, 276, 344
AfaI	GTAC	2 cut(s)	223, 420
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	205, 253, 293
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	143, 155, 242, 340
AluI	AGCT	4 cut(s)	143, 155, 242, 340
Alw21I	GWGCWC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	239, 377, 380
Asp718I	GGTACC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	20, 159
AvaII	GGWCC	2 cut(s)	20, 159
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	251, 364, 392
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	3 cut(s)	240, 378, 381
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	241, 379, 382
Bme18I	GGWCC	2 cut(s)	20, 159
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	20, 159
BmiI	GGNNCC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	372, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	372, 394
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	38, 163
BseXI	GCAGC	3 cut(s)	251, 364, 392
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	116, 268
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	2 cut(s)	372, 394
BspACI	CCGC	5 cut(s)	100, 146, 219, 276, 344
BspCNI	CTCAG	2 cut(s)	39, 162
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	372, 394
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	372, 394
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	47, 149
BstDSI	CCRYGG	2 cut(s)	372, 394
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 368, 377
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	251, 364, 392
BstV2I	GAAGAC	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	372, 394
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	20, 159
Csp6I	GTAC	2 cut(s)	222, 419
CviAII	CATG	5 cut(s)	109, 234, 313, 373, 395
CviJI	RGCY	6 cut(s)	114, 143, 155, 242, 340, 377
CviKI_1	RGCY	6 cut(s)	114, 143, 155, 242, 340, 377
CviQI	GTAC	2 cut(s)	222, 419
DdeI	CTNAG	2 cut(s)	47, 149
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	372, 394
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	20, 159
EcoO109I	RGGNCCY	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	372, 394
EcoT22I	ATGCAT	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	372, 394
FaeI	CATG	5 cut(s)	112, 237, 316, 376, 398
FaiI	YATR	8 cut(s)	31, 110, 195, 235, 259, 314, 374, 396
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	5 cut(s)	108, 233, 312, 372, 394
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	240, 378, 381
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	240, 378, 381
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	240, 378, 381
HaeII	RGCGCY	1 cut(s)	215
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	112, 237, 316, 376, 398
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	152, 325
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	56, 126
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	33, 261, 271, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 368, 377
HpyF3I	CTNAG	2 cut(s)	47, 149
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	112, 237, 316, 376, 398
HspAI	GCGC	1 cut(s)	212
KpnI	GGTACC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	2 cut(s)	153, 163
Lsp1109I	GCAGC	3 cut(s)	251, 364, 392
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	17, 119
MhlI	GDGCHC	2 cut(s)	116, 268
MmeI	TCCRAC	2 cut(s)	303, 313
MnlI	CCTC	7 cut(s)	11, 33, 72, 126, 172, 202, 351
Mph1103I	ATGCAT	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	99, 368, 377
NcoI	CCATGG	2 cut(s)	372, 394
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	112, 237, 316, 376, 398
NlaIV	GGNNCC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	241, 379, 382
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	20, 159
PspPPI	RGGWCCY	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	223, 420
RsaNI	GTAC	2 cut(s)	222, 419
SatI	GCNGC	3 cut(s)	240, 378, 381
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	20, 159
SduI	GDGCHC	2 cut(s)	116, 268
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	2 cut(s)	20, 159
SsiI	CCGC	5 cut(s)	100, 146, 219, 276, 344
StyI	CCWWGG	2 cut(s)	372, 394
TaiI	ACGT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	239, 377, 380
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	20, 159
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.