Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Reverse (-)

42321315 .. 42326995

Gene Structure 5681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1353300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGAGAGGTGCGGGAGGTCCTCTTCTATGCATAGGCGATCTGCTGAGCGACGTGGGGGAATCAGATGCTTCGCCGCCACCGCAACAGCCTGAGACCTCTTCGTCTTCTTTTGTTTCCAGCTCCGATCAGAGCTTGGACCTCACCAAGTTGTTCCAGGAGAACTATGAGCAGCTGAATGAGGCGCTTGACGGTACAGATCATTCATGGGCAGCTCTTACTTTGAAGTTATGCAGTGCTTTGGAAACTGCAAACAAGTTAGTTCAGTCAACAAACTCAAATGTCATGTCAATGTCGGAGAAGGTTGGAGAGCTTGAGGGAGTTATCAAGAGGGCAGATTCTGCCATATCAGCAGCAAGGGTCGTTCATGGTTCACTAAACAAAAAGGAAGGACCACTTATTGGCAATCAAAATGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.76

Weight (kDa)

4.7

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	401
AciI	CCGC	3 cut(s)	14, 77, 83
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	123, 135, 175, 215, 313
AluI	AGCT	5 cut(s)	123, 135, 175, 215, 313
Alw26I	GTCTC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	172, 212, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	20, 139, 392
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	3 cut(s)	20, 139, 392
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	184, 224, 365
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	4 cut(s)	77, 173, 213, 354
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	4 cut(s)	78, 174, 214, 355
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	3 cut(s)	20, 139, 392
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	20, 139, 392
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	38, 84
BseXI	GCAGC	3 cut(s)	184, 224, 365
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	40, 127, 199
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	3 cut(s)	14, 77, 83
BspCNI	CTCAG	2 cut(s)	39, 85
BspTNI	GGTCTC	1 cut(s)	89
BssMI	GATC	3 cut(s)	40, 127, 199
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	30, 106
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	47, 93
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	43, 130, 202
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	40, 127, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 341, 350
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	184, 224, 365
BstV2I	GAAGAC	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	20, 139, 392
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	207, 286, 368
CviJI	RGCY	6 cut(s)	91, 123, 135, 175, 215, 313
CviKI_1	RGCY	6 cut(s)	91, 123, 135, 175, 215, 313
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	47, 93
DpnI	GATC	3 cut(s)	42, 129, 201
DpnII	GATC	3 cut(s)	40, 127, 199
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	30, 106
EarI	CTCTTC	2 cut(s)	30, 106
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	20, 139, 392
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	35
FaeI	CATG	3 cut(s)	210, 289, 371
FaiI	YATR	8 cut(s)	31, 35, 168, 208, 232, 287, 347, 369
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	3 cut(s)	206, 285, 367
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	77, 173, 213, 354
Fsp4HI	GCNGC	4 cut(s)	77, 173, 213, 354
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	77, 173, 213, 354
HaeII	RGCGCY	1 cut(s)	188
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	210, 289, 371
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	62, 338
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	270, 374
Hpy188I	TCNGA	4 cut(s)	67, 127, 132, 298
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	2 cut(s)	270, 374
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	295, 383
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	33, 234, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 341, 350
HpyF3I	CTNAG	2 cut(s)	47, 93
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	210, 289, 371
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	40, 127, 199
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	105, 133, 143, 170
Lsp1109I	GCAGC	3 cut(s)	184, 224, 365
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	54
MalI	GATC	3 cut(s)	42, 129, 201
MboI	GATC	3 cut(s)	40, 127, 199
MboII	GAAGA	3 cut(s)	17, 93, 99
MmeI	TCCRAC	2 cut(s)	276, 286
MnlI	CCTC	7 cut(s)	11, 33, 109, 152, 175, 310, 324
Mph1103I	ATGCAT	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	82, 341, 350
NdeII	GATC	3 cut(s)	40, 127, 199
NlaIII	CATG	3 cut(s)	210, 289, 371
NsiI	ATGCAT	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	62, 338
PflMI	CCANNNNNTGG	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	78, 174, 214, 355
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	20, 139, 392
PspPPI	RGGWCCY	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	290
SatI	GCNGC	4 cut(s)	77, 173, 213, 354
Sau3AI	GATC	3 cut(s)	40, 127, 199
Sau96I	GGNCC	3 cut(s)	20, 139, 392
ScrFI	CCNGG	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	3 cut(s)	20, 139, 392
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	3 cut(s)	14, 77, 83
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	62, 338
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	172, 212, 353
TspDTI	ATGAA	2 cut(s)	195, 356
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	3 cut(s)	20, 139, 392
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.