Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009377

Physical Location & Seq

Genomic Coordinates Reverse (-)

12776644 .. 12778394

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAATCAGAGCAAAAGCGAGAGACACAGATGATGAAAGGTGTGGGAGGACCGCTTCTATGCATAGGCGATCTGCTGAGCGATGTGGGAGAATCAGATGCTTCACCTCCACCGCAACACAATGAGCCCTCGGCTTCTGCTTCTATTTCCACCTCTACTAGTCAAAACCCGGACCTTACCAAGCTGTTCCAGGAGAACTATGAGCAGCTGAATGAGGCGCTTGCCGGGACAGACCACTCATGGGCAGGTCTTACTCTGAAGCTATGCGGTGCTCTGGAAACTGCAAACAATTTGGTTAAGACAACCAACTCGAATGTCACATTGTTGTCGGAGAAGGTTGGAGATCTTGAGGAAGTTATCAAGAGGGCAGATTCTGCCATAGCAGCAGCGAGGGTTGTCCATGCCTCACTTAATGAAAAAGAGGGTTCACTCATTGGCAATCAAAATATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.02

Weight (kDa)

4.79

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08240 AT4G08240
fragaria_vesca	FvH4_2g26530
malus_domestica	MD03G1200300.v1.1 MD08G1167900.v1.1 MD15G1353300.v1.1
prunus_persica	Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1 Prupe.1G501600_v2.0.a1
pyrus_communis	pycom08g14330
rosa_chinensis	RchiOBHm_Chr6g0295401
rosa_laevigata	RLG00000011809
rosa_multiflora	Rmu_sc0003058.1_g000011
rosa_roxburghii	Rroxscaffold_171G00441530 Rroxscaffold_7G00172530
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363700 Rh6BG371900 Rh6CG378300 Rh6DG364500
rosa_wichuraiana	Rw6G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	3 cut(s)	53, 113, 267
AcuI	CTGAAG	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	184, 208, 262
AluI	AGCT	3 cut(s)	184, 208, 262
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	205, 383, 386
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	50, 172
AsuC2I	CCSGG	2 cut(s)	170, 226
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	50, 172
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	217, 395, 398
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	2 cut(s)	170, 226
BcoDI	GTCTC	1 cut(s)	17
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	3 cut(s)	206, 384, 387
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	3 cut(s)	207, 385, 388
Bme1390I	CCNGG	3 cut(s)	170, 191, 226
Bme18I	GGWCC	2 cut(s)	50, 172
BmgT120I	GGNCC	2 cut(s)	50, 172
BmrFI	CCNGG	3 cut(s)	170, 191, 226
BmsI	GCATC	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	170, 226
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	217, 395, 398
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	170, 225
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	129, 274
Bsp143I	GATC	2 cut(s)	70, 343
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	3 cut(s)	53, 113, 267
BspCNI	CTCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	70, 343
Bst2UI	CCWGG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	73, 346
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	70, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	168, 189, 224
BstV1I	GCAGC	3 cut(s)	217, 395, 398
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	50, 172
CviAII	CATG	2 cut(s)	240, 401
CviJI	RGCY	5 cut(s)	127, 134, 184, 208, 262
CviKI_1	RGCY	5 cut(s)	127, 134, 184, 208, 262
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	72, 345
DpnII	GATC	2 cut(s)	70, 343
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	50, 172
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	2 cut(s)	243, 404
FaiI	YATR	7 cut(s)	61, 65, 201, 241, 265, 380, 402
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	239, 400
Fnu4HI	GCNGC	3 cut(s)	206, 384, 387
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	206, 384, 387
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	206, 384, 387
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	2 cut(s)	170, 225
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	243, 404
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	2 cut(s)	92, 371
HpaII	CCGG	2 cut(s)	170, 225
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	10, 97, 258, 331
Hpy188III	TCNNGA	3 cut(s)	275, 347, 361
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	63, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	243, 404
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	70, 343
LpnPI	CCDG	6 cut(s)	176, 183, 203, 231, 238, 260
Lsp1109I	GCAGC	3 cut(s)	217, 395, 398
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	72, 345
MboI	GATC	2 cut(s)	70, 343
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	129, 274
MluCI	AATT	1 cut(s)	289
MmeI	TCCRAC	2 cut(s)	309, 319
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	2 cut(s)	297, 411
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	170, 225
MspR9I	CCNGG	3 cut(s)	170, 191, 226
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NciI	CCSGG	2 cut(s)	170, 226
NdeII	GATC	2 cut(s)	70, 343
NlaIII	CATG	2 cut(s)	243, 404
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	92, 371
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	207, 385, 388
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	50, 172
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	297, 411
SatI	GCNGC	3 cut(s)	206, 384, 387
Sau3AI	GATC	2 cut(s)	70, 343
Sau96I	GGNCC	2 cut(s)	50, 172
ScrFI	CCNGG	3 cut(s)	170, 191, 226
SduI	GDGCHC	2 cut(s)	129, 274
SetI	ASST	9 cut(s)	43, 109, 155, 177, 186, 210, 250, 264, 339
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	2 cut(s)	50, 172
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	3 cut(s)	53, 113, 267
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	168, 189, 224
TaqI	TCGA	1 cut(s)	311
TasI	AATT	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	92, 371
Tru1I	TTAA	2 cut(s)	297, 411
Tru9I	TTAA	2 cut(s)	297, 411
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	205, 383, 386
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	17, 50, 429
VpaK11BI	GGWCC	2 cut(s)	50, 172
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.